Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HMGN3	Gene	0	205.69	231.10	190.28	634.43	376.85	273.01	1007.30	386.40	229.17	229.79	183.66	279.16	255.70	138.16	488.22	302.73	149.95	108.33	318.70	443.65	282.94	441.77	199.32	246.51	195.19	167.18	202.73	330.28	495.43
2	275036	Transcript	0	218.72	462.45	472.11	904.83	1055.33	331.88	900.50	392.65	204.03	311.10	254.56	373.13	170.08	217.78	946.17	323.90	190.45	142.69	436.99	744.71	287.03	301.09	220.64	442.93	274.52	170.97	469.29	545.38	467.37
3	344726	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	392966	Transcript	0	48.23	32.03	96.78	148.08	89.67	47.77	182.93	115.53	52.24	54.14	34.81	64.01	50.01	33.79	116.21	35.43	41.82	15.69	67.89	77.29	43.15	132.50	36.62	77.44	43.59	48.33	74.18	92.10	148.65
5	ER1a	ExonRegion	0	188.63	201.77	245.62	1461.06	726.65	237.37	1238.20	441.13	168.42	144.14	113.78	226.35	284.63	94.13	460.03	448.78	138.96	156.66	351.07	418.67	264.25	550.11	255.17	158.23	139.14	205.31	166.42	406.22	519.97
6	E1_Da	NovelBoundary	0	0.00	0.00	3.01	8.41	0.00	1.80	17.22	0.00	1.43	0.00	1.52	5.48	1.62	1.88	0.00	0.00	2.52	0.00	8.09	3.47	1.72	0.00	1.92	11.42	8.71	14.98	4.57	8.81	4.79
7	E1a_E3b	KnownJunction	0	149.53	79.69	407.16	686.12	360.18	172.35	794.43	404.70	205.31	181.47	133.15	247.65	195.43	128.66	531.98	142.67	150.27	74.36	266.83	302.43	159.16	351.45	135.54	274.61	113.09	189.98	296.59	361.88	573.91
8	Ix	Intron	1	0.00	0.00	0.00	0.00	0.00	1.05	7.67	0.00	1.92	0.00	0.00	0.47	0.00	1.89	2.09	0.68	0.00	3.79	2.43	2.85	0.00	0.69	0.67	0.00	0.00	0.00	0.00	1.86	1.02
9	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.06	7.79	0.00	1.95	0.00	0.00	0.48	0.00	1.92	2.12	0.69	0.00	3.82	2.47	2.90	0.00	0.70	0.68	0.00	0.00	0.00	0.00	1.89	1.04
10	I1_AR1	ActiveIntronRegion	0	3.34	0.00	0.00	0.00	0.00	0.00	1.31	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.00	2.53	0.00	0.00	2.42	1.63	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.88	0.00	1.23	0.00	0.00	0.00	0.00	1.22	0.00	0.00	0.00	1.76	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E3_Ab	NovelBoundary	0	0.00	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	3.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER3a	ExonRegion	0	96.46	64.06	193.56	296.16	179.34	95.54	365.86	231.06	104.49	108.28	69.62	128.02	100.02	67.58	232.43	70.86	83.64	31.39	135.77	154.59	86.30	265.00	73.23	154.88	87.19	96.66	148.35	184.19	297.29
15	ER3b	ExonRegion	0	366.41	214.83	249.53	421.50	248.28	249.50	864.80	760.99	271.13	287.57	190.27	295.69	336.73	188.99	458.58	225.84	162.28	107.91	302.96	485.80	251.10	958.84	134.17	388.07	221.75	178.95	294.22	347.04	608.43
16	E3a_E4a	KnownJunction	0	476.43	275.24	87.97	314.48	135.43	363.11	933.34	1069.82	334.25	316.21	254.75	253.10	291.15	208.67	605.93	323.82	139.02	198.17	323.70	774.48	395.37	1047.70	154.69	471.59	262.01	176.03	274.88	407.71	446.67
17	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	8.37	0.00	0.00	0.00	0.00	0.00	2.05	2.33	0.00	2.39	0.00	0.00	0.00	0.00	1.62
18	I3_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.75	0.00	1.84	0.00	4.33	0.00	0.00	0.00	0.00	0.00	1.27	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34
19	I3_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	3.78	0.00	1.84	1.03	5.78	0.10	0.00	0.00	0.00	0.00	2.53	1.00	0.00	0.00	0.00	0.00	0.60	0.00	0.00	0.00	0.00	0.00	0.14	1.57
20	I3_AR3	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	4.12	0.00	1.61	1.12	5.78	1.19	0.00	0.00	0.00	0.00	2.53	1.57	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	1.63	4.03
21	I3_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	2.95	0.00	0.00	0.92	1.28	1.19	0.00	0.00	0.37	6.22	1.50	3.45	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.42	0.00	0.00	1.63	4.72
22	I3_AR5	ActiveIntronRegion	0	0.75	0.38	0.00	0.84	0.57	1.69	0.71	0.64	1.44	2.53	0.01	0.79	0.00	0.56	2.92	1.08	1.36	0.45	3.36	0.32	0.50	0.64	0.42	0.25	0.80	0.00	0.00	1.92	0.22
23	I3_SR2	SilentIntronRegion	0	0.93	0.82	1.01	1.04	0.60	1.68	0.80	0.13	0.54	1.34	0.48	0.88	0.00	0.87	0.50	2.18	2.01	1.79	2.09	0.50	2.37	0.13	0.13	0.39	0.11	0.00	0.80	1.63	0.92
24	I3_AR6	ActiveIntronRegion	0	1.39	2.09	1.87	3.88	1.37	1.68	2.61	1.79	1.30	4.29	0.38	2.27	0.00	1.63	1.00	1.39	2.07	0.90	1.38	0.00	2.37	0.00	0.78	0.47	1.06	0.34	0.40	5.91	0.15
25	I3_SR3	SilentIntronRegion	0	0.49	3.82	0.19	0.82	0.28	2.83	1.62	0.32	1.19	1.40	1.23	0.71	0.00	1.42	0.53	2.19	1.45	1.03	2.19	0.32	3.35	0.52	0.00	0.49	0.49	0.00	0.10	0.56	0.42
26	E4a_E5a	KnownJunction	0	1328.71	582.19	67.57	222.81	206.61	843.78	2475.45	2124.61	979.32	735.44	354.21	530.56	1223.97	386.54	1546.72	941.78	285.17	323.64	889.50	1756.03	980.82	3562.09	457.38	724.90	642.00	613.41	264.34	749.64	1609.47
27	ER4a	ExonRegion	0	1006.43	468.10	110.45	245.71	174.85	646.78	1804.30	1901.53	754.56	556.57	352.23	511.25	969.32	365.15	1053.48	635.80	282.59	243.35	523.04	1374.23	738.87	2668.05	339.71	628.92	496.74	442.05	272.84	623.33	1340.38
28	I4	Intron	0	1.18	2.58	0.82	0.87	0.99	1.54	1.23	0.52	1.15	2.06	1.48	1.82	0.05	1.30	2.86	1.52	1.82	0.94	1.43	0.66	2.58	0.11	0.40	1.57	0.55	0.64	0.07	1.76	1.09
29	I4_SR1	SilentIntronRegion	0	1.44	3.01	0.87	1.31	1.04	1.69	0.86	0.56	0.77	2.24	1.56	2.11	0.04	1.25	1.35	1.38	1.78	0.87	1.56	0.73	3.13	0.06	0.44	1.52	0.44	0.29	0.11	1.49	1.08
30	I4_AR1	ActiveIntronRegion	0	0.84	0.91	1.60	0.00	0.00	1.94	5.33	1.27	2.06	1.77	0.47	1.27	0.00	0.83	5.82	0.97	0.82	0.86	1.25	0.00	2.60	0.00	0.65	1.64	0.00	0.62	0.00	0.00	2.74
31	I4_SR2	SilentIntronRegion	0	0.00	2.63	0.97	0.00	0.00	4.89	0.54	0.49	2.27	0.83	0.00	3.27	0.00	1.37	8.96	0.00	2.00	0.00	0.80	0.00	1.65	0.00	0.16	1.20	1.11	0.00	0.00	0.00	2.21
32	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	6.63	7.10	13.56	6.12	0.00	7.15	4.49	0.00	5.80	2.30	8.37	0.00	2.39	5.39	0.00	3.80	5.58	0.00	0.00	3.05	3.86	6.35	0.00	12.99	4.72
33	ER5a	ExonRegion	0	932.29	806.99	106.93	300.54	175.62	1321.38	5142.89	1645.46	1150.75	1061.06	667.09	955.60	1100.19	565.71	1834.26	1514.57	519.19	468.40	1254.99	1767.42	1493.45	1976.44	898.35	1019.10	957.65	838.14	508.66	1431.85	2459.14
34	E5_Da	NovelBoundary	0	7.43	8.92	2.57	0.00	7.37	10.59	13.27	0.00	5.63	19.01	1.61	6.05	1.62	11.41	24.72	63.34	10.78	13.87	8.09	15.71	16.49	4.28	1.87	6.10	8.26	8.50	2.53	14.47	16.64
35	E5a_E6a	KnownJunction	0	623.24	862.96	107.06	460.29	245.67	1429.04	6183.43	1100.77	987.76	1066.47	928.85	1086.25	829.39	557.59	2169.39	1460.06	565.03	499.47	1747.07	1455.01	1478.15	823.97	1056.80	1156.05	1051.54	945.61	826.22	1940.19	2330.59
36	E5a_E7a	NovelJunction	1	2.54	26.08	0.00	0.00	13.26	14.23	45.14	2.54	10.20	7.91	21.16	3.13	3.44	7.22	8.17	22.64	13.46	0.00	16.18	8.27	3.81	2.48	9.26	2.69	6.78	21.16	40.35	0.00	15.88
37	I5	Intron	0	5.91	9.35	4.61	17.97	5.51	13.78	14.15	6.46	4.14	10.31	4.47	9.51	0.57	9.64	11.28	27.32	17.77	12.11	9.21	14.31	12.33	3.16	1.13	10.51	5.73	2.17	3.44	8.37	4.52
38	I5_AR1	ActiveIntronRegion	0	5.92	9.36	4.62	18.01	5.52	13.81	14.18	6.48	4.15	10.33	4.48	9.53	0.57	9.66	11.31	27.38	17.81	12.14	9.22	14.34	12.36	3.17	1.14	10.54	5.75	2.17	3.45	8.40	4.53
39	E6_Aa	NovelBoundary	1	16.63	18.91	11.69	9.71	39.64	9.05	8.01	11.40	11.12	8.35	12.18	16.11	5.00	15.69	8.37	39.32	31.87	13.87	32.15	23.07	28.08	4.96	0.00	38.76	9.55	4.29	0.00	25.43	5.02
40	ER6a	ExonRegion	0	338.43	429.87	317.65	386.57	398.46	523.26	2078.35	615.40	405.64	495.10	464.32	689.23	469.62	344.18	1050.31	522.02	454.38	193.47	688.42	769.70	501.35	433.52	480.95	566.13	436.87	375.58	553.60	919.05	1137.79
41	E6_Da	KnownBoundary	0	172.00	95.59	216.88	243.73	247.88	151.01	630.45	231.26	213.62	173.56	64.47	238.25	118.91	136.57	183.17	229.19	328.66	64.99	80.92	217.09	116.56	126.21	64.32	218.98	81.00	89.43	142.38	180.62	322.84
42	E6a_E7a	KnownJunction	0	218.72	462.45	472.11	904.83	1055.33	331.88	900.50	392.65	204.03	311.10	254.56	373.13	170.08	217.78	946.17	323.90	190.45	142.69	436.99	744.71	287.03	301.09	220.64	442.93	274.52	170.97	469.29	545.38	467.37
43	ER6b	ExonRegion	0	169.86	263.83	417.44	622.11	704.10	199.19	695.09	272.12	222.51	180.51	165.86	270.00	189.81	130.11	336.99	193.94	127.29	54.72	242.08	516.14	224.67	230.66	111.45	243.97	128.61	85.02	212.64	179.98	334.59
44	E6_Db	NovelBoundary	0	125.82	84.83	38.27	149.69	81.64	99.26	121.58	99.93	107.19	59.80	25.12	61.60	6.15	64.30	86.11	190.25	137.78	97.74	89.02	53.51	41.27	30.82	7.44	189.79	56.68	19.31	2.19	70.18	35.82
45	E6b_E7a	KnownJunction	0	156.31	448.20	519.70	1099.81	1061.07	267.15	903.25	247.29	315.00	266.40	224.13	328.73	248.51	155.87	610.52	301.94	134.07	76.29	412.49	717.33	327.82	289.76	107.96	354.29	185.68	135.35	242.03	203.05	340.24
46	E7_Aa	NovelBoundary	0	45.95	86.58	9.07	53.71	34.34	78.88	100.35	2.39	69.31	32.48	25.66	40.93	7.42	53.51	95.27	150.93	127.36	83.86	137.35	60.45	39.67	0.00	4.53	135.30	21.18	0.00	2.09	13.16	14.69
47	ER7a	ExonRegion	0	57.18	141.47	149.50	531.79	302.71	129.96	364.88	91.28	94.51	113.19	107.91	155.78	86.88	60.90	266.94	104.74	65.61	42.84	160.68	208.84	117.09	88.31	78.44	112.80	85.54	47.42	120.44	105.68	148.83
48	ER7b	ExonRegion	0	7.50	9.85	2.52	14.63	0.00	7.90	39.81	6.90	5.34	5.05	1.19	14.22	0.00	7.94	43.40	4.43	1.50	8.87	7.92	21.78	19.61	2.70	4.52	15.60	10.36	1.57	5.04	8.97	3.36
49	IG7_AR1	ActiveIntergenicRegion	0	0.00	1.16	0.00	1.58	1.08	0.91	1.11	0.41	2.74	1.27	0.00	0.75	0.50	0.30	0.94	1.31	1.14	0.46	1.76	2.04	2.81	0.00	0.00	0.71	0.93	0.00	0.81	1.80	0.22