Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C6orf223	Gene	0	81.21	25.64	7.51	4.72	0.00	12.22	41.73	23.84	0.17	25.12	1.55	9.57	9.22	31.80	18.39	1.81	0.38	11.58	22.35	5.06	54.85	24.16	102.44	25.82	45.07	9.58	2.09	12.45	6.52
2	448947	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	439969	Transcript	0	18.42	7.87	1.26	0.00	0.00	3.75	17.54	5.76	0.00	3.25	0.32	1.27	1.89	8.82	2.55	0.86	0.00	3.04	5.76	0.03	12.52	7.07	17.96	7.16	6.52	2.25	0.00	4.78	0.00
4	457281	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	442114	Transcript	0	18.79	7.61	0.00	0.00	0.00	2.28	11.39	4.98	0.00	8.77	0.00	1.20	1.26	3.97	0.00	0.00	0.00	0.00	0.00	1.65	19.11	5.81	18.67	7.15	10.51	4.23	0.00	3.57	0.00
6	336600	Transcript	0	1.43	1.09	0.00	0.00	0.00	0.00	3.36	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.28	0.00	1.81	0.72	4.29	0.00	0.00	0.00	0.00
7	435297	Transcript	0	2.26	2.59	0.59	0.00	0.00	1.16	0.43	1.81	0.00	2.74	0.08	0.61	0.55	1.56	0.77	0.00	0.00	0.14	1.57	0.00	4.61	0.88	3.43	2.26	6.23	1.10	0.26	0.80	0.42
8	ER1a	ExonRegion	0	22.15	7.66	0.00	0.00	0.00	0.46	7.39	5.52	0.00	7.70	0.00	4.54	3.90	3.63	0.00	0.84	0.00	0.91	4.53	2.81	5.23	1.80	21.10	2.87	4.29	1.05	0.00	4.89	0.45
9	ER1b	ExonRegion	0	44.82	10.16	3.77	0.00	0.00	12.83	55.00	19.22	0.00	25.77	0.00	15.16	5.34	16.20	7.20	1.27	0.00	2.53	7.71	9.58	29.94	11.72	93.61	8.32	18.44	13.34	2.86	13.66	5.56
10	E1_Da	NovelBoundary	0	2.71	0.00	0.00	0.00	0.00	0.00	13.39	2.19	0.00	0.00	0.00	0.00	0.00	1.88	0.00	3.44	0.00	4.62	0.00	4.13	9.67	0.00	10.59	2.51	0.00	0.00	0.00	5.66	0.00
11	E1a_E2a	KnownJunction	0	5.60	4.85	1.40	0.00	0.00	3.34	14.42	2.49	0.00	3.91	0.00	1.54	1.94	4.39	0.00	0.00	0.00	0.00	0.00	0.00	9.87	4.96	20.64	7.48	5.80	2.10	0.00	6.60	0.00
12	E1a_E2b	KnownJunction	1	18.88	4.17	0.00	0.00	0.00	3.72	24.43	0.00	0.00	2.04	0.00	0.00	0.00	8.91	0.00	0.00	0.00	5.39	8.09	3.64	9.47	2.48	38.17	5.80	5.49	0.00	0.00	0.00	1.22
13	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	Ix	Intron	1	22.03	0.64	0.33	0.00	0.97	2.72	11.95	1.46	0.00	1.71	0.24	0.36	0.00	3.93	0.91	1.33	0.00	2.35	7.58	1.33	15.23	1.07	6.79	4.25	5.37	0.62	0.00	0.32	0.27
15	Ix_AR1	ActiveIntronRegion	0	22.21	0.64	0.33	0.00	0.97	2.74	12.04	1.47	0.00	1.73	0.24	0.37	0.00	3.96	0.92	1.34	0.00	2.37	7.64	1.34	15.34	1.08	6.84	4.29	5.41	0.63	0.00	0.32	0.27
16	E2_Aa	NovelBoundary	0	26.54	9.02	1.42	0.00	0.00	1.65	7.38	2.29	0.00	3.71	1.61	0.00	0.00	3.12	0.00	0.00	0.00	0.00	0.00	0.00	10.59	0.00	13.54	7.12	0.00	1.59	0.00	2.29	0.00
17	ER2a	ExonRegion	0	31.23	10.90	1.12	0.00	0.00	4.16	20.66	9.04	0.00	2.59	0.65	1.01	1.83	13.26	5.09	1.73	0.00	6.08	11.52	0.06	15.17	9.18	15.29	6.84	7.24	2.39	0.00	2.96	0.00
18	E2_Ab	KnownBoundary	0	42.41	16.77	0.00	0.00	0.00	5.49	21.40	4.38	0.00	2.04	1.61	0.00	0.00	15.86	16.74	3.52	0.00	13.87	24.28	0.00	18.93	12.20	11.67	8.13	7.50	3.86	0.00	1.75	0.00
19	ER2b	ExonRegion	1	77.52	18.85	0.21	0.00	0.00	6.09	31.72	26.17	0.00	7.77	0.77	4.74	1.58	32.83	5.87	4.22	0.00	4.42	10.78	4.48	34.06	18.59	36.12	18.34	29.30	3.52	0.00	0.35	1.31
20	E2_Da	KnownBoundary	0	62.82	27.92	1.54	0.00	0.00	9.09	18.02	25.63	0.00	7.27	0.00	7.59	0.00	25.32	0.00	0.00	0.00	0.00	8.09	8.27	22.34	21.68	11.92	14.36	31.44	5.45	0.00	0.00	2.05
21	E2a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER2c	ExonRegion	0	99.88	18.17	0.00	0.00	0.00	15.47	40.10	33.30	0.00	20.00	0.00	10.53	4.75	39.22	8.46	0.48	0.00	7.49	5.39	9.39	45.71	24.93	43.74	21.42	34.82	9.23	0.00	9.81	7.51
23	E2_Ac	KnownBoundary	0	115.73	9.02	0.00	0.00	0.00	17.04	50.81	32.85	0.00	29.64	0.00	12.41	5.32	30.40	16.54	0.00	0.00	4.62	7.87	7.11	64.10	25.91	55.70	26.38	33.68	8.54	0.00	24.44	8.95
24	ER2d	ExonRegion	0	135.62	33.47	0.42	0.00	0.00	30.09	99.86	37.02	0.00	41.28	0.00	12.03	10.57	48.78	23.16	7.32	0.00	9.44	27.77	15.34	95.03	32.25	126.77	33.90	48.40	24.42	0.00	18.28	13.42
25	E2_Db	NovelBoundary	0	5.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	0.00	0.00	2.26	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
26	E2b_E3a	KnownJunction	0	90.25	16.29	1.02	0.00	0.00	24.79	103.16	29.96	0.00	58.32	0.00	11.36	3.22	42.76	34.68	6.81	0.00	9.25	32.37	11.50	71.48	36.17	163.51	23.63	29.51	37.89	0.00	12.09	18.06
27	E3_Aa	NovelBoundary	0	2.89	0.00	0.00	0.00	0.00	0.00	8.12	0.00	0.00	0.00	0.00	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	ER3a	ExonRegion	0	64.16	15.59	3.04	0.00	0.00	11.82	76.73	26.56	0.00	24.62	0.81	13.64	4.35	33.78	21.88	4.45	0.00	10.04	14.30	3.67	42.05	24.45	109.15	17.50	20.30	18.55	6.23	14.41	6.46
29	E3a_E4a	KnownJunction	0	61.58	17.64	3.76	0.00	0.00	0.00	37.48	14.23	0.00	11.34	0.00	14.25	0.00	31.15	9.97	0.00	0.00	4.62	0.00	7.86	39.83	17.21	66.88	24.11	23.30	7.72	0.00	4.36	1.62
30	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4_Aa	NovelBoundary	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.99	0.00	0.00	0.00	0.00	8.09	0.00	6.42	0.00	2.02	5.56	0.00	0.00	0.00	2.20	0.00
32	ER4a	ExonRegion	0	77.48	14.88	6.66	0.60	0.00	9.06	27.53	13.38	0.00	15.77	0.60	5.15	3.64	20.37	8.37	0.41	0.00	11.02	16.51	4.84	33.45	20.00	68.27	13.83	24.36	3.70	0.15	6.30	3.15
33	E4_Da	KnownBoundary	0	104.46	9.02	9.29	0.00	0.00	21.06	25.06	14.18	0.00	28.56	0.00	10.81	1.34	26.01	9.77	0.00	0.00	9.25	0.00	0.00	59.20	6.81	127.11	27.10	41.79	9.23	0.00	5.57	8.12
34	ER4b	ExonRegion	0	97.00	32.15	9.89	9.75	0.00	18.00	48.61	25.78	0.06	33.53	1.48	10.64	10.20	36.72	22.38	1.45	0.87	17.73	25.37	4.12	70.72	28.67	130.83	32.65	54.13	10.08	1.99	13.42	8.76
35	E4_Ab	KnownBoundary	0	131.71	29.96	2.54	0.00	0.00	20.45	72.55	28.02	1.74	37.03	4.05	19.55	19.65	54.08	42.85	0.00	0.00	24.14	32.37	11.08	138.58	27.27	193.65	40.67	89.03	23.43	9.34	23.59	15.65
36	ER4c	ExonRegion	0	130.47	42.81	13.86	4.80	0.00	22.61	69.58	50.16	0.62	49.41	5.36	17.38	19.37	58.04	21.74	3.97	1.35	17.34	48.67	8.67	118.78	44.37	193.06	57.32	98.89	23.68	4.87	24.99	14.00
37	E4_Db	KnownBoundary	0	146.28	42.17	10.71	0.00	0.00	9.67	64.25	42.70	0.00	58.28	9.68	19.91	19.49	41.74	7.37	14.23	0.00	5.39	72.61	15.55	144.00	46.09	166.17	69.15	124.30	29.61	5.07	31.05	7.43
38	E4b_E4c	KnownJunction	0	37.57	15.22	0.00	0.00	0.00	4.57	22.77	9.95	0.00	17.54	0.00	2.41	2.52	7.93	0.00	0.00	0.00	0.00	0.00	3.31	38.23	11.62	37.33	14.30	21.03	8.45	0.00	7.14	0.00
39	ER4d	ExonRegion	0	99.26	35.07	9.95	7.32	0.00	12.49	52.65	31.51	0.36	30.72	2.25	13.09	14.59	42.99	30.68	2.68	0.44	13.71	30.02	6.23	68.57	30.91	135.47	34.13	60.91	11.76	3.33	17.85	8.53
40	E4_Ac	KnownBoundary	0	90.90	31.80	3.06	10.78	0.00	11.32	44.11	19.06	0.00	25.80	0.00	8.46	8.50	33.46	17.74	3.82	0.00	14.26	0.00	0.00	66.66	18.28	99.63	25.36	60.73	4.33	2.24	9.17	0.00
41	ER4e	ExonRegion	0	38.47	31.12	1.93	12.06	0.00	8.19	13.87	8.48	0.00	6.52	0.82	1.65	4.13	14.71	6.43	0.96	0.00	6.05	6.61	2.09	27.24	6.16	42.52	16.89	27.10	4.76	0.42	4.80	0.00
42	E4_Dc	NovelBoundary	0	5.49	3.68	0.00	0.00	0.00	0.00	4.63	5.08	0.00	5.07	0.00	0.00	0.00	2.24	0.00	0.00	0.00	4.75	0.00	0.00	29.44	4.81	14.87	5.74	6.97	0.00	0.00	3.64	0.00
43	E4_Dd	NovelBoundary	0	17.81	4.36	4.01	0.00	0.00	0.00	18.37	7.07	0.00	6.27	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.00	13.15	11.13	6.78	0.00	0.00	0.00	0.00
44	ER4f	ExonRegion	0	1.43	1.09	0.00	0.00	0.00	0.00	3.36	1.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.28	0.00	1.81	0.72	4.29	0.00	0.00	0.00	0.00
45	Ix	Intron	0	16.56	6.94	2.01	0.00	0.14	2.67	3.00	6.53	0.06	10.12	0.54	3.00	2.02	7.69	2.15	0.92	0.13	2.45	4.02	0.79	12.65	3.09	18.42	6.65	20.03	3.28	0.47	3.45	2.55
46	Ix_AR1	ActiveIntronRegion	0	23.37	7.49	2.31	0.00	0.40	3.35	5.90	7.78	0.18	10.93	1.06	2.56	2.90	11.11	2.84	2.22	0.24	3.21	6.24	1.57	20.77	4.55	30.60	10.15	23.95	4.34	0.45	4.11	2.45
47	Ix_SR1	SilentIntronRegion	0	12.88	6.65	1.85	0.00	0.00	2.31	1.43	5.86	0.00	9.70	0.26	3.25	1.55	5.84	1.79	0.22	0.07	2.04	2.82	0.37	8.26	2.31	11.83	4.75	17.94	2.71	0.49	3.10	2.60
48	E5_Aa	NovelBoundary	0	0.00	3.49	0.00	0.00	0.00	3.41	0.00	7.91	0.00	3.56	0.00	1.87	3.50	5.94	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	11.37	0.00	0.00	2.29	0.00
49	ER5a	ExonRegion	0	4.52	5.18	1.17	0.00	0.00	2.31	0.86	3.62	0.00	5.47	0.17	1.21	1.09	3.11	1.54	0.01	0.00	0.27	3.14	0.00	9.22	1.77	6.85	4.53	12.45	2.21	0.51	1.60	0.85