Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	ZNF318	Gene	0	28.52	26.43	20.32	8.37	8.81	53.02	8.84	20.12	12.44	73.51	26.83	15.13	6.69	66.95	17.37	100.02	126.14	125.65	87.75	106.91	183.91	61.02	97.97	50.51	31.75	92.55	43.39	256.58	68.89
2	361428	Transcript	0	26.79	34.84	26.22	13.67	4.98	73.53	10.31	19.46	15.44	90.88	39.89	22.82	7.07	83.29	11.90	121.94	103.64	142.27	86.41	72.18	193.27	64.83	133.00	38.91	48.57	113.59	48.88	182.08	71.88
3	318149	Transcript	0	0.69	0.00	0.00	0.00	0.00	5.82	0.66	12.41	1.68	15.52	0.00	0.00	2.77	7.07	40.19	39.63	47.94	42.71	37.15	112.48	95.17	29.39	25.13	84.26	5.54	38.99	11.54	156.09	63.69
4	ER1a	ExonRegion	0	7.52	5.38	2.91	1.53	0.70	5.39	2.15	2.65	0.41	4.13	1.75	1.37	0.48	7.13	0.00	21.85	9.97	30.56	13.38	25.28	17.92	14.32	15.65	1.69	2.50	17.73	2.41	51.95	6.41
5	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	16.18	3.39	0.00	1.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1a_E2a	KnownJunction	0	19.35	8.43	9.59	0.00	13.85	17.92	4.41	6.87	0.00	15.02	2.85	8.07	0.00	24.68	0.00	92.26	46.73	64.73	56.42	78.23	44.24	46.24	71.90	13.04	9.81	27.21	2.04	125.76	19.08
7	E2_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
8	ER2a	ExonRegion	0	55.59	19.49	20.07	4.91	10.67	45.17	8.55	22.78	5.56	48.15	21.61	10.34	4.20	69.04	5.86	99.92	106.18	154.35	74.24	162.30	144.74	77.22	108.19	39.57	25.45	76.45	20.56	260.48	45.26
9	E2a_E3a	KnownJunction	0	75.21	21.62	25.54	0.00	14.44	54.94	12.99	40.76	12.27	47.81	24.71	16.75	0.00	94.52	8.37	101.36	121.05	185.97	80.92	189.05	180.74	123.73	142.53	45.82	33.41	72.87	44.18	332.36	80.75
10	I2_SR1	SilentIntronRegion	0	0.00	0.48	0.00	0.00	0.00	0.08	0.30	0.27	0.63	0.43	0.00	0.00	0.00	0.00	0.68	0.00	0.22	0.59	0.00	1.08	1.72	0.67	0.27	0.00	0.00	0.00	0.00	1.45	0.52
11	ER3a	ExonRegion	0	65.54	35.06	30.36	10.84	15.07	76.85	12.80	37.59	16.07	111.90	33.06	18.39	8.47	124.60	25.52	168.61	200.47	225.98	134.88	232.51	288.53	139.98	171.17	67.93	47.12	138.14	54.38	477.86	86.01
12	E3_Da	NovelBoundary	1	3.01	0.00	0.00	0.00	0.00	3.91	0.00	0.00	0.00	6.91	1.49	1.51	1.85	0.86	0.00	0.00	3.85	14.64	16.18	11.33	13.76	5.69	6.99	0.00	3.45	6.57	10.14	19.37	1.49
13	E3a_E4a	KnownJunction	1	57.39	64.47	29.05	30.20	7.22	89.20	14.88	40.21	16.78	170.33	34.26	16.26	1.75	113.91	19.53	134.94	243.39	249.54	97.11	204.35	347.40	129.08	181.68	68.43	38.00	185.69	39.31	762.22	102.70
14	I3	Intron	0	0.92	0.00	0.21	0.88	0.00	1.01	0.50	0.45	0.45	2.13	1.54	0.15	0.40	0.97	0.90	1.02	1.56	4.99	3.14	4.21	3.59	1.22	1.44	1.85	0.18	2.12	0.68	3.61	1.07
15	I3_AR1	ActiveIntronRegion	0	0.93	0.00	0.73	0.00	0.00	0.98	0.44	1.60	1.09	4.23	2.84	0.54	1.40	1.77	1.19	3.08	1.94	7.48	2.77	8.60	5.82	2.35	3.92	3.41	0.62	5.12	2.38	9.55	3.05
16	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.79	0.00	0.00	0.00	1.11	0.00	0.00	2.52	0.00	16.18	3.80	0.00	2.38	0.00	0.00	0.00	4.12	0.00	0.00	0.00
17	ER4a	ExonRegion	0	54.34	44.10	38.79	11.71	15.23	107.52	16.87	34.07	20.05	139.69	55.66	28.43	10.48	131.56	33.50	177.77	297.28	241.54	166.75	233.16	407.05	133.05	185.22	98.00	46.46	200.50	61.02	655.46	137.75
18	E4_Da	NovelBoundary	1	2.77	9.50	0.00	0.00	12.08	3.61	5.09	0.00	6.52	12.46	8.86	4.82	7.93	6.18	7.57	3.82	10.04	14.13	8.09	8.27	13.24	6.66	6.70	13.64	8.98	15.62	4.47	23.14	17.46
19	E4a_E5a	KnownJunction	1	34.51	30.44	30.97	10.78	13.26	87.71	7.84	42.70	16.72	171.05	47.14	24.37	4.71	105.66	103.85	226.05	210.80	269.06	145.44	213.53	336.37	143.71	212.96	112.15	52.55	149.77	53.03	614.48	176.75
20	I4_AR1	ActiveIntronRegion	0	2.14	1.89	0.98	0.00	1.09	5.53	0.35	0.00	0.96	2.74	4.82	0.85	1.57	2.98	5.41	2.65	3.14	20.74	16.02	4.78	11.77	1.95	7.19	10.14	4.58	3.50	3.24	6.15	10.78
21	I4_AR2	ActiveIntronRegion	0	2.45	4.34	0.32	0.00	4.98	7.51	2.02	0.00	2.33	7.22	4.59	1.46	1.95	6.03	0.00	6.42	7.94	20.08	17.62	5.72	9.73	0.71	14.08	3.76	4.39	4.27	5.95	12.40	8.53
22	I4_AR3	ActiveIntronRegion	0	3.51	19.26	1.58	0.00	0.23	4.19	0.55	0.00	2.71	9.52	6.17	3.54	4.02	5.48	0.00	2.53	8.42	20.34	13.58	12.26	9.53	2.62	11.26	2.15	8.38	3.14	12.82	11.11	12.87
23	I4_SR1	SilentIntronRegion	0	1.06	1.41	0.11	0.33	0.44	0.41	0.37	0.00	1.85	2.56	1.01	0.97	0.87	0.92	1.47	0.37	1.96	5.62	4.88	2.31	4.71	0.60	1.39	2.59	0.60	1.27	0.92	1.89	2.26
24	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00	0.00	0.00	2.54	0.00	8.09	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	3.59	0.00
25	ER5a	ExonRegion	0	43.13	37.25	41.05	15.14	9.02	67.74	9.98	35.62	12.58	135.01	39.30	26.20	4.18	92.80	43.35	191.30	179.29	190.25	169.04	207.99	313.99	116.42	162.31	112.83	53.56	135.80	60.53	499.80	123.08
26	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
27	E5a_E6a	KnownJunction	1	26.54	34.81	35.15	9.06	20.63	72.05	5.84	25.23	11.57	112.53	38.31	18.28	3.38	87.67	27.51	144.28	180.19	181.47	193.99	165.23	320.76	98.40	143.76	96.48	61.11	153.38	45.27	457.04	104.42
28	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	9.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.90	0.00	13.46	0.88	4.62	8.09	6.78	1.93	1.99	0.00	2.63	1.93	0.00	0.00	7.64	0.00
29	ER6a	ExonRegion	0	35.57	48.52	34.04	12.64	8.51	87.50	14.23	38.38	19.07	149.20	56.38	21.81	9.88	102.64	43.71	199.26	213.43	222.85	175.89	227.47	419.03	122.28	195.18	123.61	51.02	175.66	84.22	483.40	146.31
30	E6_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.37	7.65	4.28	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	6.02	3.37
31	E6a_E7a	KnownJunction	0	41.41	39.26	37.02	81.75	0.00	108.16	20.08	28.32	29.11	178.08	38.40	29.91	8.63	110.03	36.48	247.32	276.14	223.34	169.72	233.38	448.59	124.90	189.17	188.12	55.09	193.63	55.81	386.37	170.88
32	E6a_E11a	NovelJunction	1	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	2.14	0.00	0.00	4.13	13.36	7.15	6.11	2.51	0.00	0.00	0.00	12.76	0.00
33	I6	Intron	0	0.36	0.23	0.00	0.00	0.00	1.38	0.29	0.04	1.11	1.72	0.20	0.38	0.25	0.70	1.62	0.71	4.63	1.84	2.89	0.51	6.46	0.17	0.34	1.13	0.51	0.97	0.26	4.66	1.85
34	I6_SR1	SilentIntronRegion	0	0.36	0.23	0.00	0.00	0.00	1.38	0.29	0.04	1.11	1.72	0.20	0.38	0.25	0.70	1.62	0.71	4.63	1.84	2.90	0.51	6.47	0.17	0.35	1.13	0.51	0.98	0.26	4.67	1.85
35	E7_Aa	NovelBoundary	0	2.65	0.00	0.00	0.00	0.00	1.96	0.00	0.00	3.26	3.79	0.00	0.00	0.00	1.02	0.00	6.27	5.36	0.00	15.96	0.00	11.59	1.94	0.00	0.00	0.00	0.00	0.00	4.09	3.99
36	ER7a	ExonRegion	0	37.63	41.06	31.88	16.06	6.25	78.09	16.04	33.16	15.89	133.46	39.55	23.53	11.21	103.88	43.10	186.37	197.11	217.32	164.90	201.46	320.20	117.96	177.67	132.77	48.30	162.15	65.81	436.79	158.74
37	E7_Da	NovelBoundary	0	35.80	18.23	6.98	10.78	14.00	37.98	5.09	10.05	5.97	56.28	1.61	1.30	0.00	28.96	8.77	49.72	149.60	38.14	113.29	36.88	63.66	8.75	9.55	22.25	23.64	30.77	1.84	94.27	29.35
38	E7a_E8a	KnownJunction	0	18.76	34.32	24.27	0.00	5.60	57.82	5.78	16.42	17.05	87.16	26.89	24.91	4.90	71.92	0.00	123.32	59.83	126.25	32.37	23.40	157.55	74.72	135.49	15.61	50.65	96.04	34.09	115.61	91.68
39	E7a_E11a	KnownJunction	1	0.00	0.00	0.00	0.00	0.00	4.95	0.00	15.13	1.28	14.62	0.00	0.00	3.28	8.93	59.20	43.99	61.70	47.78	40.46	127.03	104.13	20.03	25.07	96.42	6.25	41.58	17.94	160.72	71.77
40	I7	Intron	0	7.56	4.88	1.47	1.81	1.85	7.62	1.27	1.86	3.18	8.00	1.50	1.55	0.00	6.84	3.13	10.90	19.74	18.76	26.55	15.03	12.93	2.50	2.50	4.06	3.24	6.14	4.15	18.06	3.62
41	I7_AR1	ActiveIntronRegion	0	7.60	4.91	1.48	1.81	1.85	7.65	1.28	1.87	3.19	8.04	1.51	1.56	0.00	6.87	3.14	10.95	19.84	18.84	26.67	15.11	13.00	2.51	2.52	4.08	3.26	6.17	4.17	18.15	3.64
42	E8_Aa	NovelBoundary	1	8.61	0.00	10.59	0.00	0.00	3.76	5.84	2.09	2.31	11.50	1.36	2.68	0.00	13.16	25.11	30.52	43.02	23.12	0.00	7.77	14.96	2.38	0.00	5.68	3.86	10.90	0.00	28.44	5.58
43	ER8a	ExonRegion	0	25.85	36.43	31.56	9.21	7.17	68.73	11.83	24.03	10.00	95.20	44.75	21.04	6.20	96.23	4.87	112.72	90.29	146.53	82.69	69.51	184.23	66.39	146.49	33.47	42.75	112.26	35.24	206.71	77.07
44	E8_Da	NovelBoundary	0	11.33	0.00	0.00	0.00	0.00	5.33	0.00	0.00	6.52	5.19	4.84	0.00	0.00	7.58	0.00	10.33	5.96	23.12	40.46	10.67	11.91	2.33	0.00	5.62	1.93	3.86	0.00	9.75	1.29
45	E8a_E9a	KnownJunction	0	30.08	16.58	24.82	18.98	0.00	50.76	11.61	14.88	9.11	92.63	38.97	20.18	4.62	90.86	25.11	111.76	119.46	148.72	105.20	84.60	183.46	78.86	143.32	24.94	35.23	140.97	54.22	180.62	62.10
46	I8	Intron	0	5.97	0.63	1.52	5.71	2.50	4.85	1.49	1.57	2.20	4.35	1.49	1.22	0.51	7.40	4.17	10.22	10.10	13.78	18.71	8.80	19.63	0.92	1.13	5.63	3.25	2.95	0.42	13.07	1.03
47	I8_SR1	SilentIntronRegion	0	5.98	0.63	1.53	5.72	2.50	4.86	1.49	1.57	2.20	4.36	1.49	1.23	0.52	7.42	4.18	10.24	10.12	13.81	18.75	8.82	19.67	0.92	1.13	5.64	3.26	2.96	0.42	13.10	1.03
48	E9_Aa	NovelBoundary	0	10.97	4.75	1.40	0.00	0.00	5.33	8.24	2.54	2.86	14.06	0.00	1.54	0.00	7.87	0.00	13.77	10.60	18.49	8.09	0.00	30.40	1.90	0.00	11.31	0.00	4.12	0.00	9.71	3.10
49	ER9a	ExonRegion	0	38.24	50.13	31.75	17.64	10.26	80.70	16.87	26.22	24.22	118.40	44.84	24.90	13.33	93.72	24.52	151.18	136.09	167.83	100.21	91.57	221.11	69.47	145.00	52.10	71.54	139.03	59.29	234.33	75.36
50	E9_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	1.33	0.00	1.37	0.00	0.00	0.00	9.25	0.00	0.00	8.94	0.00	0.00	0.00	0.00	0.00	0.00	9.66	2.05
51	E9a_E10a	KnownJunction	0	32.85	52.64	32.49	29.33	0.00	150.55	10.30	22.74	22.05	107.69	68.01	35.27	7.93	108.63	7.37	173.42	153.04	194.96	145.66	123.97	324.37	77.54	173.75	79.79	66.68	145.31	73.15	267.70	84.91
52	I9	Intron	0	1.52	0.00	0.00	0.00	0.00	1.71	0.00	0.33	1.89	2.05	0.00	0.00	0.00	0.48	0.00	2.65	1.06	1.37	1.70	6.37	8.36	0.00	0.32	0.38	1.52	0.00	0.00	3.77	2.73
53	I9_SR1	SilentIntronRegion	0	1.54	0.00	0.00	0.00	0.00	1.73	0.00	0.33	1.91	2.07	0.00	0.00	0.00	0.49	0.00	2.67	1.07	1.38	1.72	6.43	8.45	0.00	0.32	0.39	1.54	0.00	0.00	3.81	2.76
54	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	1.13	0.00	6.43	0.00	4.62	0.00	4.13	15.08	0.00	2.31	2.87	0.00	0.00	0.00	3.77	0.00
55	ER10a	ExonRegion	0	14.94	18.96	12.44	6.83	6.86	32.64	5.44	12.46	10.20	44.17	15.86	10.63	5.46	38.38	9.51	59.23	63.11	69.34	52.34	40.06	88.87	22.01	53.93	27.53	24.56	47.92	37.31	87.52	40.16
56	E10_Da	NovelBoundary	1	0.00	0.00	0.97	0.00	0.00	3.76	2.40	0.00	1.28	7.47	0.00	0.00	1.85	3.17	0.00	3.82	8.33	0.00	8.09	15.80	41.43	2.43	0.00	2.81	1.70	0.00	6.26	31.27	12.12
57	I10	Intron	0	0.69	0.73	0.25	0.48	0.39	1.85	0.60	0.60	0.92	3.32	0.91	0.27	0.14	1.32	3.47	5.99	6.55	2.14	6.93	6.52	8.95	0.80	1.07	4.17	1.44	1.84	3.08	11.83	4.08
58	I10_SR1	SilentIntronRegion	1	0.60	0.79	0.65	1.01	0.17	2.23	0.28	1.17	0.81	4.63	1.03	0.26	0.10	1.93	4.40	8.13	7.75	2.13	7.31	6.57	10.96	1.14	1.85	3.97	2.62	2.63	3.68	19.83	6.40
59	I10_AR1	ActiveIntronRegion	0	0.58	0.29	0.00	0.65	1.32	2.73	1.27	0.83	1.52	3.38	2.08	0.22	0.22	0.90	3.32	5.89	7.08	1.56	9.50	9.77	7.95	0.97	0.97	5.56	2.06	3.03	8.91	13.90	1.50
60	I10_SR2	SilentIntronRegion	0	0.65	0.49	0.00	0.00	1.47	2.29	1.82	0.28	2.45	1.74	1.80	0.56	0.20	2.23	4.44	4.93	6.92	5.91	11.88	13.19	17.14	0.00	0.27	4.21	0.43	1.42	1.38	4.43	5.15
61	I10_AR2	ActiveIntronRegion	0	1.18	1.04	0.00	0.00	0.00	1.42	0.14	0.00	0.42	2.48	0.08	0.17	0.27	0.50	3.16	4.77	4.13	1.77	5.35	2.17	4.45	0.62	0.75	2.37	0.29	0.86	1.13	4.26	2.33
62	I10_AR3	ActiveIntronRegion	0	1.05	0.00	0.00	0.00	0.00	1.35	0.00	0.00	0.00	2.83	0.00	0.90	0.00	1.11	0.00	2.77	0.56	0.92	4.70	6.76	2.92	0.00	0.00	6.27	1.15	0.54	0.00	2.77	4.25
63	I10_SR3	SilentIntronRegion	0	0.61	1.37	0.00	0.00	0.00	0.59	0.40	0.00	0.88	2.23	0.34	0.26	0.00	0.51	1.44	2.69	6.18	1.51	3.82	4.87	6.43	0.51	0.17	5.80	0.07	0.29	0.00	4.74	1.77
64	I10_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.31	1.17	0.00	0.00	1.98	0.00	0.00	0.00	1.11	2.26	4.98	8.38	0.86	1.85	4.93	8.00	0.81	0.54	4.37	0.00	0.70	0.00	6.95	3.34
65	E11_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	3.82	6.93	0.00	16.18	12.32	7.86	2.14	0.00	11.01	1.78	0.00	0.00	3.32	7.82
66	ER11a	ExonRegion	1	1.37	0.00	0.00	0.00	0.00	6.70	1.32	9.70	2.07	16.42	0.00	0.00	2.26	5.21	21.18	35.27	34.17	37.65	33.83	97.94	86.20	38.76	25.20	72.09	4.84	36.39	5.14	151.47	55.61
67	IG39	Intergenic	0	1.14	1.83	0.24	1.02	0.00	1.17	0.86	1.97	1.50	6.68	0.59	0.22	0.12	1.79	11.18	10.72	24.17	6.71	12.62	39.28	23.10	4.23	1.87	20.75	1.17	6.82	1.17	44.61	9.47
68	IG39_AR1	ActiveIntergenicRegion	0	3.07	0.58	0.30	0.00	0.00	1.48	0.72	2.31	0.80	8.83	2.14	0.00	0.58	3.75	19.26	15.50	32.73	10.98	21.12	44.08	42.64	12.58	5.50	37.26	1.28	13.50	2.62	66.59	10.38
69	IG39_SR1	SilentIntergenicRegion	0	0.67	2.15	0.22	1.28	0.00	1.10	0.90	1.88	1.67	6.15	0.21	0.28	0.00	1.30	9.19	9.54	22.08	5.65	10.53	38.15	18.28	2.17	0.97	16.68	1.14	5.18	0.82	39.22	9.26