Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HLA-DOB	Gene	0	296.27	119.79	130.95	143.85	63.14	103.39	662.77	210.36	322.85	346.22	498.73	240.04	69.70	270.96	589.17	860.56	1589.28	271.82	653.12	1459.75	263.55	330.01	298.95	261.71	509.83	208.98	188.78	330.79	613.84
2	452392	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3	438763	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	475235	Transcript	0	45.17	49.17	16.83	8.84	15.18	16.24	72.97	24.40	48.74	121.19	103.84	44.06	4.97	93.60	112.83	341.81	411.09	61.91	198.83	172.52	65.99	80.06	16.73	61.81	68.99	12.68	25.16	42.64	46.31
5	488325	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	447394	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	305.43	70.33	89.93	331.95	151.00	133.88	477.34	183.05	258.91	246.29	356.64	132.35	64.16	142.87	290.96	777.14	577.17	301.01	608.54	949.41	196.47	301.38	351.13	166.77	272.44	191.84	152.08	369.00	454.56
8	E1_Ab	KnownBoundary	0	317.52	60.50	90.47	257.97	95.20	132.71	546.52	229.47	340.40	243.07	311.06	141.62	55.73	138.28	368.74	849.90	453.27	258.02	477.23	1134.55	225.50	344.65	376.46	187.70	346.16	205.90	134.73	436.55	415.47
9	E1_Ac	KnownBoundary	0	307.43	123.13	112.52	169.10	80.61	93.00	575.24	139.29	204.03	337.66	446.43	168.19	55.70	214.48	594.57	1446.97	908.45	631.62	1933.20	1253.55	203.84	561.82	364.55	276.05	520.92	250.19	212.75	297.76	691.14
10	ER1b	ExonRegion	0	695.38	226.66	244.99	441.81	186.81	241.71	1374.41	419.46	504.74	912.46	978.67	394.05	119.83	418.00	795.75	3119.97	3040.56	676.61	1890.29	2873.21	609.54	1035.82	875.95	504.09	1244.35	558.06	536.49	633.27	1453.01
11	ER1c	ExonRegion	0	339.45	125.57	173.34	150.57	52.91	115.51	765.74	192.37	260.23	578.41	533.11	261.81	64.75	262.77	427.26	1717.98	2760.13	287.68	778.17	1523.34	341.51	539.73	408.45	259.96	714.58	290.66	286.25	283.82	1001.79
12	E1_Ad	KnownBoundary	0	117.97	24.92	28.18	0.00	0.00	48.38	296.43	73.70	106.07	140.57	126.38	84.61	34.81	87.41	164.24	419.75	362.44	41.61	56.65	701.62	109.82	159.61	56.05	88.05	189.50	94.67	48.85	119.47	409.80
13	ER1d	ExonRegion	0	267.50	21.52	33.30	30.44	4.78	85.48	416.40	150.63	169.90	115.77	133.61	117.71	49.28	161.40	136.59	271.92	481.32	104.88	113.24	900.79	149.28	265.08	76.46	160.81	178.64	108.28	46.54	97.60	425.60
14	E1a_E2a	KnownJunction	0	462.03	58.66	38.44	92.75	12.97	146.87	713.35	256.69	332.15	195.85	252.19	173.82	69.52	268.85	270.68	407.66	551.14	124.71	0.00	1557.06	227.75	403.09	130.91	298.00	296.57	158.70	77.88	157.57	526.40
15	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	Ix	Intron	0	6.93	17.98	1.67	1.02	3.95	5.75	8.81	4.03	10.52	29.17	8.48	4.78	0.34	24.72	118.81	94.70	110.33	36.90	83.06	28.18	9.08	2.31	1.89	6.75	16.98	2.47	5.57	26.11	4.64
17	Ix_AR1	ActiveIntronRegion	0	6.26	13.59	1.43	0.00	2.98	5.31	7.78	6.36	9.29	30.09	11.56	6.35	0.63	27.04	109.69	100.77	131.07	36.80	66.23	28.70	9.35	1.95	2.43	4.75	16.23	4.35	4.91	31.16	5.17
18	Ix_SR1	SilentIntronRegion	0	7.38	20.85	1.83	1.68	4.58	6.05	9.50	2.54	11.35	28.67	6.54	3.79	0.15	23.32	125.00	91.10	97.38	37.08	94.08	27.93	8.94	2.55	1.55	8.05	17.52	1.27	6.01	22.95	4.31
19	E2_Aa	NovelBoundary	1	20.88	37.42	7.72	9.49	7.37	1.84	11.96	6.27	9.38	35.71	1.27	10.66	2.67	33.50	317.32	156.13	113.94	13.87	0.00	63.68	15.24	0.00	4.68	16.99	17.65	7.72	12.13	33.47	7.00
20	ER2a	ExonRegion	0	568.46	184.86	72.12	117.13	64.54	277.99	1506.66	348.36	413.66	729.45	995.07	357.88	121.99	406.28	753.21	1905.17	2095.50	541.05	1190.61	2865.29	665.76	681.82	549.18	446.68	1123.67	454.31	318.69	533.22	1044.56
21	E2_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	ER2b	ExonRegion	0	165.48	44.88	150.79	177.97	87.64	93.87	519.14	108.57	97.21	205.05	334.34	153.09	35.13	129.87	259.80	439.23	1204.14	148.90	256.13	1019.45	201.51	178.79	183.06	125.82	227.92	135.85	152.62	180.01	390.57
23	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	E2a_E3b	KnownJunction	0	2.60	4.85	1.02	0.00	0.00	0.00	5.72	0.00	2.80	0.00	0.00	1.33	1.34	0.00	32.29	3.82	12.27	0.00	8.09	18.36	5.46	0.00	0.00	3.05	6.90	0.00	0.00	0.00	7.26
25	Ix	Intron	0	4.70	5.63	2.51	0.00	0.56	2.06	3.95	1.49	6.53	10.50	6.87	0.29	0.00	8.61	23.14	41.08	43.23	14.26	9.22	9.13	5.27	1.46	1.04	5.96	7.59	2.54	1.48	6.77	2.86
26	Ix_AR1	ActiveIntronRegion	0	0.37	3.57	0.88	0.00	0.00	0.12	0.70	0.00	1.07	4.17	7.87	0.00	0.00	3.39	17.29	13.37	13.74	5.58	11.90	5.19	1.49	2.55	2.79	0.94	5.87	2.56	5.49	9.11	0.99
27	Ix_SR1	SilentIntronRegion	0	5.23	5.90	2.71	0.00	0.63	2.30	4.35	1.67	7.20	11.29	6.78	0.32	0.00	9.26	23.94	44.51	46.89	15.34	8.95	9.64	5.74	1.34	0.84	6.57	7.83	2.55	1.00	6.53	3.09
28	E3_Ab	NovelBoundary	0	28.84	7.85	71.71	94.47	35.22	26.17	249.40	31.95	58.83	82.21	105.85	51.69	17.93	31.40	117.40	159.73	388.49	32.24	104.75	182.19	80.94	25.38	33.93	29.37	102.56	40.98	40.30	64.03	111.26
29	ER3a	ExonRegion	0	127.32	45.00	107.49	251.56	79.21	74.23	548.69	75.48	109.88	228.40	319.07	114.04	36.89	67.39	301.87	388.97	679.07	171.66	401.89	705.20	216.24	101.67	115.19	91.64	275.72	123.22	132.24	133.83	247.76
30	ER3b	ExonRegion	0	102.48	30.63	154.30	190.89	59.20	41.46	409.53	73.93	98.62	188.29	364.09	187.95	41.81	92.82	287.07	423.20	1101.91	139.06	288.23	483.57	109.27	101.37	204.11	82.13	252.28	124.36	143.44	249.17	341.76
31	E3_Da	KnownBoundary	0	117.79	31.80	48.21	104.18	13.12	30.81	231.09	83.81	106.37	111.13	202.56	97.32	19.71	81.58	226.23	270.04	575.22	29.15	24.28	491.07	79.66	144.49	121.60	118.26	237.96	60.21	58.79	142.66	187.38
32	E3_Db	KnownBoundary	0	150.53	39.17	43.95	45.30	12.53	17.80	227.83	60.07	92.30	85.00	136.03	92.47	18.57	69.99	120.99	212.82	555.24	5.39	32.37	332.29	58.40	90.82	112.73	64.66	89.03	66.77	37.57	90.99	160.48
33	ER3c	ExonRegion	0	362.25	111.69	127.92	153.57	79.70	70.11	630.93	193.31	217.96	277.20	485.56	285.72	59.75	234.02	582.46	787.06	1551.67	251.08	629.09	1354.74	212.53	315.48	309.21	232.32	504.55	183.88	126.38	329.27	465.73
34	ER3d	ExonRegion	0	350.13	109.74	142.87	141.48	64.66	65.84	603.94	208.23	230.80	245.71	419.14	289.00	57.74	254.57	540.97	825.84	1564.10	273.36	549.38	1326.69	203.10	312.57	280.94	227.54	403.86	177.69	134.04	310.81	494.80
35	E3_Dc	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E3c_E3c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER3e	ExonRegion	0	45.17	49.17	16.83	8.84	15.18	16.24	72.97	24.40	48.74	121.19	103.84	44.06	4.97	93.60	112.83	341.81	411.09	61.91	198.83	172.52	65.99	80.06	16.73	61.81	68.99	12.68	25.16	42.64	46.31
38	E3_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER3f	ExonRegion	0	574.41	182.88	335.21	275.29	111.50	163.60	1174.91	418.56	479.22	575.66	961.65	534.18	134.90	538.89	1165.49	1451.51	3128.63	508.74	1205.39	2820.79	413.43	524.88	614.07	508.73	984.76	361.97	357.08	681.99	1022.89
40	E3_Dd	NovelBoundary	0	27.72	3.97	24.24	0.00	6.19	3.88	27.63	11.69	18.91	62.08	57.73	17.47	9.08	42.41	25.11	113.83	129.25	28.90	40.46	87.83	38.06	75.79	10.79	26.74	21.52	23.35	28.53	6.52	48.10
41	E3d_E4a	KnownJunction	0	684.29	222.31	361.91	412.83	133.52	190.42	1252.37	439.33	535.23	620.51	1007.75	521.92	125.79	535.77	1289.60	1430.53	3032.11	536.45	1424.27	3077.40	434.23	545.63	636.36	577.28	923.00	443.78	442.56	968.41	1142.89
42	I3	Intron	0	18.29	12.90	10.19	1.46	6.95	6.42	13.93	12.72	11.96	46.94	51.75	12.78	3.18	28.96	17.58	98.81	58.84	24.20	48.04	63.16	26.37	62.28	8.82	24.48	22.94	14.69	18.98	10.60	28.68
43	I3_SR1	SilentIntronRegion	0	18.58	13.11	10.35	1.48	7.06	6.52	14.15	12.92	12.15	47.63	52.58	12.98	3.23	29.41	17.82	100.35	59.76	24.54	48.81	64.16	26.74	63.19	8.96	24.83	23.30	14.89	19.29	10.69	29.12
44	E4_Aa	NovelBoundary	0	22.95	8.34	17.24	0.00	6.48	4.95	16.13	19.56	24.79	48.49	47.17	16.05	3.85	37.25	41.66	100.06	75.23	28.25	48.55	85.43	42.08	80.32	15.76	34.45	27.54	14.55	18.44	6.43	40.01
45	ER4a	ExonRegion	0	677.67	233.74	397.18	352.84	130.14	183.60	1566.36	525.69	587.11	697.97	1243.22	648.75	147.24	620.28	1349.22	1637.46	3737.02	597.26	1412.20	3254.06	469.90	592.93	730.42	558.96	1017.73	490.20	512.77	999.52	1456.55
46	E4_Da	NovelBoundary	0	57.75	13.67	15.27	0.00	7.37	16.38	55.78	53.15	37.91	115.36	88.70	35.39	8.88	84.28	95.27	249.54	287.83	56.77	145.66	147.78	60.17	71.22	21.18	70.28	71.38	29.27	80.81	25.97	51.53
47	E4a_E5a	KnownJunction	0	518.07	199.43	232.61	295.50	96.97	145.64	1592.80	489.95	580.46	641.89	1103.54	552.07	115.66	517.58	1602.13	1665.38	3103.06	596.94	1189.37	2872.64	430.67	497.55	677.87	514.83	867.27	443.78	530.87	865.56	1301.19
48	I4	Intron	0	38.96	10.48	14.97	5.83	5.30	9.70	31.17	23.97	19.63	44.65	43.91	23.40	3.69	53.39	36.46	143.32	253.09	29.88	50.27	118.29	25.54	60.64	15.70	32.68	32.57	13.22	11.43	20.78	33.59
49	I4_SR1	SilentIntronRegion	0	29.16	3.67	7.70	0.00	1.85	6.46	26.53	23.76	12.52	27.13	39.97	13.29	2.66	33.37	15.89	111.29	127.80	32.81	38.63	82.56	15.09	41.80	11.02	26.71	22.70	11.22	3.11	11.14	25.81
50	I4_AR1	ActiveIntronRegion	0	42.45	12.68	17.36	7.67	6.41	10.81	32.98	24.31	22.04	50.52	45.70	26.74	4.05	60.14	43.16	154.82	294.24	29.39	54.47	130.63	29.04	67.13	17.31	34.93	35.97	14.00	14.09	23.95	36.40
51	E5_Aa	NovelBoundary	0	71.73	9.60	23.62	0.00	13.26	22.25	65.11	31.90	36.45	101.70	71.30	52.41	4.81	79.76	92.48	238.29	568.67	42.64	113.07	103.70	47.05	75.45	20.09	36.61	60.24	54.46	57.85	27.77	59.79
52	ER5a	ExonRegion	0	759.67	288.16	215.46	198.48	96.08	217.74	1510.48	619.20	935.95	719.64	1097.31	565.32	183.38	700.43	1625.30	1683.80	3623.06	653.14	1508.65	3833.11	557.33	827.62	718.86	667.67	1309.83	505.77	404.61	776.50	1567.44
53	E5_Da	KnownBoundary	0	553.46	173.83	239.01	97.49	97.27	100.18	1095.72	411.17	868.57	593.95	828.13	462.67	142.22	534.35	1339.23	1237.21	3789.80	483.03	1123.50	2398.61	303.31	684.73	407.15	453.16	751.15	372.54	264.39	642.16	1427.54
54	ER5b	ExonRegion	0	329.63	193.40	160.50	178.08	71.78	117.67	746.25	242.65	594.64	388.11	564.63	251.75	91.74	337.61	891.68	846.22	1807.47	297.75	854.22	1853.26	317.44	366.53	334.67	364.17	616.14	245.20	222.35	398.96	785.05