Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HLA-DQA2	Gene	0	96.56	5.85	1150.09	81.67	170.94	36.95	38.04	1888.83	1693.27	5.28	470.57	966.10	46.35	553.39	38.38	38.86	215.60	828.97	127.16	26.94	1707.01	927.37	58.94	56.12	312.07	21.37	699.09	118.73	123.79
2	374940	Transcript	0	64.37	5.46	832.76	52.73	63.77	37.22	24.08	1558.25	2647.42	8.19	232.10	1027.62	28.61	435.35	20.68	42.11	115.15	257.90	48.30	30.23	1577.74	346.94	37.49	60.07	298.07	19.77	464.68	68.23	130.79
3	412842	Transcript	0	0.00	0.00	0.71	0.00	0.00	0.00	0.00	0.50	0.51	0.00	0.00	0.11	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.00	2.20	0.00	0.00	0.00	0.00	0.00	0.00	0.15	0.00
4	ER1a	ExonRegion	0	0.00	0.00	0.22	0.00	67.53	0.00	0.00	0.45	55.28	0.00	0.74	0.11	0.87	0.06	0.75	0.00	13.20	7.88	1.31	0.00	12.81	22.43	0.00	0.00	0.00	0.00	33.94	17.24	0.24
5	E1_Ab	KnownBoundary	0	5.60	0.00	0.00	0.00	302.70	0.00	0.00	0.00	114.29	0.00	76.52	0.00	4.84	0.00	0.00	0.00	37.64	4.62	0.00	0.00	29.76	239.73	0.00	0.00	0.00	0.00	344.80	113.18	1.25
6	ER1b	ExonRegion	0	1.57	4.06	5008.16	46.51	51.61	6.18	2.22	1440.96	3174.02	3.18	6.69	939.72	3.75	1582.07	1.45	0.91	32.93	2199.38	3.09	7.54	1614.19	19.77	2.30	4.95	203.89	16.72	15.84	6.23	75.64
7	E1a_E2a	KnownJunction	0	0.00	0.00	137.56	65.35	0.00	4.76	2.57	833.23	621.32	1.76	0.00	601.95	1.50	5.54	0.00	0.00	3.11	4.62	0.00	23.07	480.40	6.90	217.04	2.69	28.53	1.63	11.23	169.80	19.48
8	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1	Intron	0	0.08	0.00	0.20	0.00	0.00	0.00	0.04	0.14	0.30	0.03	0.12	0.18	0.00	0.09	0.00	0.10	0.26	0.81	0.38	0.00	57.66	0.21	0.00	0.08	0.08	0.00	0.04	0.00	0.52
10	I1_SR1	SilentIntronRegion	0	0.08	0.00	0.20	0.00	0.00	0.00	0.04	0.14	0.30	0.03	0.12	0.18	0.00	0.09	0.00	0.10	0.26	0.81	0.38	0.00	57.70	0.21	0.00	0.08	0.08	0.00	0.04	0.00	0.52
11	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	63.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
12	ER2a	ExonRegion	0	1.99	2.93	245.30	48.93	3.62	15.89	1.41	2287.74	1492.60	5.35	6.96	1054.68	0.84	605.07	0.00	1.25	5.39	922.00	4.58	6.60	2819.14	40.61	1.41	13.60	282.70	18.64	13.94	2.58	109.23
13	E2_Da	NovelBoundary	0	0.00	0.00	5.23	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	48.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.97
14	E2a_E3a	KnownJunction	0	21.00	0.00	47.76	0.00	13.56	27.36	2.86	34.44	40.11	13.62	24.36	12.32	6.31	21.03	0.00	3.82	16.79	13.87	8.09	0.00	2285.01	62.38	9.31	42.23	34.36	17.98	42.59	4.31	90.79
15	I2	Intron	0	1.14	2.14	0.45	0.00	1.30	1.28	0.00	0.00	7.85	0.96	2.54	0.00	0.00	1.74	1.84	3.30	1.79	5.43	7.66	2.00	83.76	5.28	1.69	2.58	1.52	0.84	3.66	3.47	1.87
16	I2_SR1	SilentIntronRegion	0	1.15	2.16	0.45	0.00	1.31	1.29	0.00	0.00	7.89	0.97	2.55	0.00	0.00	1.75	1.85	3.32	1.80	5.46	7.70	2.01	84.20	5.31	1.69	2.59	1.53	0.84	3.68	3.49	1.88
17	E3_Aa	NovelBoundary	0	6.02	0.00	0.00	0.00	22.11	0.00	0.00	0.00	34.62	0.00	10.72	0.00	0.00	0.00	8.37	0.00	30.23	0.00	0.00	0.00	62.13	6.22	0.00	0.00	1.74	0.00	0.00	12.27	0.00
18	ER3a	ExonRegion	0	311.18	10.41	3267.75	295.18	586.82	91.29	139.22	7027.97	5232.44	9.77	1439.78	3338.34	153.53	1506.99	114.61	100.58	813.76	2084.91	496.35	62.67	2735.36	3430.12	227.25	131.06	1009.76	45.93	1725.38	408.16	224.88
19	E3_Da	NovelBoundary	0	2.48	0.00	0.00	0.00	6.04	0.00	0.00	0.00	35.42	0.00	29.86	0.00	3.18	1.09	0.00	0.00	69.60	50.86	16.18	0.00	80.78	18.96	0.00	3.05	0.00	8.24	24.80	24.98	1.68
20	E3a_E4a	KnownJunction	0	37.34	9.02	3587.42	160.91	12.97	39.44	16.54	6887.55	11450.66	23.65	19.46	4166.10	7.83	1834.15	7.37	39.93	19.56	544.16	0.00	37.96	2309.68	48.13	43.93	49.77	919.93	33.39	28.97	10.47	127.73
21	E3a_E5a	NovelJunction	0	0.00	0.00	2.37	0.00	0.00	1.42	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	509.92	8.46	0.00	2.87	0.00	0.00	0.00	0.00	27.37
22	I3	Intron	0	0.65	0.00	0.51	0.00	1.49	0.00	0.00	0.00	0.34	0.44	0.00	0.00	0.00	0.28	0.00	0.00	0.00	2.35	0.00	0.00	65.35	0.00	0.00	0.00	0.00	0.48	0.00	0.00	1.02
23	I3_SR1	SilentIntronRegion	0	0.66	0.00	0.52	0.00	1.51	0.00	0.00	0.00	0.35	0.45	0.00	0.00	0.00	0.28	0.00	0.00	0.00	2.38	0.00	0.00	66.13	0.00	0.00	0.00	0.00	0.49	0.00	0.00	1.03
24	E4_Aa	NovelBoundary	0	2.36	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	169.47	0.00	0.00	2.33	0.00	5.92	0.00	2.07	5.55
25	ER4a	ExonRegion	0	262.77	9.69	466.54	79.14	142.30	137.89	103.21	838.49	1527.74	9.69	891.79	840.42	126.54	290.89	74.22	168.46	539.95	681.53	214.99	110.61	1964.94	1326.52	142.21	220.54	514.73	56.43	1860.09	291.66	341.05
26	E4_Da	NovelBoundary	0	2.95	0.00	39.49	0.00	0.00	0.00	0.00	17.07	13.58	0.00	3.16	39.73	1.59	12.14	0.00	0.00	102.28	0.00	0.00	0.00	59.72	2.38	0.00	0.00	0.00	0.00	0.00	8.90	0.00
27	E4a_E5a	KnownJunction	0	0.00	3.78	101.70	8.41	0.00	5.56	0.00	63.55	138.86	4.63	0.00	129.55	0.00	46.93	0.00	0.00	2.32	9.25	0.00	0.00	2689.44	6.08	0.00	19.74	47.09	4.29	0.00	0.00	138.89
28	I4	Intron	0	0.65	0.00	0.51	0.00	0.00	0.42	0.62	0.00	0.51	0.00	0.00	2.25	0.00	0.69	0.00	0.00	0.00	0.00	0.00	0.00	29.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84
29	I4_SR1	SilentIntronRegion	0	0.66	0.00	0.52	0.00	0.00	0.42	0.62	0.00	0.52	0.00	0.00	2.28	0.00	0.70	0.00	0.00	0.00	0.00	0.00	0.00	29.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86
30	E5_Aa	NovelBoundary	0	8.97	0.00	21.03	0.00	13.85	0.00	0.00	36.18	50.83	0.00	9.59	20.21	2.90	41.72	0.00	0.00	54.99	41.35	0.00	0.00	96.59	4.52	0.00	0.00	1.63	0.00	19.13	2.11	0.00
31	ER5a	ExonRegion	0	21.73	4.81	7.89	15.19	96.05	3.20	0.65	1.20	64.55	2.96	248.50	1.94	7.80	4.74	21.08	2.16	0.73	46.70	25.18	2.57	911.82	331.56	1.31	10.28	8.61	4.74	400.37	21.80	46.05
32	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	39.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	I5	Intron	0	0.39	0.67	0.43	0.17	1.61	0.27	0.22	0.58	2.58	1.02	1.55	1.07	0.19	1.78	0.12	2.00	1.29	0.73	2.34	1.32	25.61	0.86	2.53	0.52	0.59	0.11	1.76	0.76	7.34
34	I5_SR1	SilentIntronRegion	0	0.39	0.67	0.43	0.17	1.61	0.27	0.22	0.58	2.58	1.02	1.55	1.07	0.19	1.78	0.12	2.00	1.29	0.73	2.34	1.32	25.62	0.86	2.54	0.52	0.59	0.12	1.76	0.76	7.34
35	Ix	Intron	0	0.00	0.35	2.00	0.00	0.00	0.15	0.00	0.60	2.38	0.00	0.13	0.00	0.00	0.30	0.00	0.00	1.95	4.48	0.35	0.00	5.75	7.86	0.00	0.00	0.00	0.17	0.00	0.53	3.36
36	Ix_SR1	SilentIntronRegion	0	0.00	0.35	2.01	0.00	0.00	0.15	0.00	0.60	2.39	0.00	0.13	0.00	0.00	0.30	0.00	0.00	1.96	4.50	0.35	0.00	5.78	7.89	0.00	0.00	0.00	0.17	0.00	0.54	3.37
37	Ix	Intron	0	2.45	0.08	0.54	0.00	0.24	1.47	3.16	1.47	4.79	6.47	1.19	1.24	0.00	3.48	0.27	8.21	4.42	5.66	5.96	0.53	9.83	1.08	0.00	2.46	3.56	0.27	0.59	0.41	2.33
38	Ix_SR1	SilentIntronRegion	0	2.46	0.08	0.54	0.00	0.24	1.47	3.16	1.47	4.80	6.47	1.19	1.24	0.00	3.48	0.27	8.21	4.42	5.67	5.97	0.53	9.84	1.08	0.00	2.47	3.56	0.27	0.59	0.41	2.33
39	ER6a	ExonRegion	0	0.00	0.00	0.71	0.00	0.00	0.00	0.00	0.50	0.51	0.00	0.00	0.11	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.00	2.20	0.00	0.00	0.00	0.00	0.00	0.00	0.15	0.00