Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HLA-DPA3	Gene	0	75.90	18.76	2.23	1.60	0.00	22.96	10.77	2.46	6.25	29.90	7.95	14.70	11.84	31.46	7.39	12.00	10.95	45.19	14.23	11.66	18.42	77.49	17.72	8.62	52.20	30.10	19.99	1.45	8.35
2	454398	Transcript	0	51.74	12.09	1.34	1.19	0.00	16.31	6.81	1.66	3.91	19.07	4.97	9.14	7.72	21.52	4.59	7.46	6.79	30.86	8.66	8.00	12.15	53.32	11.42	5.25	32.65	19.58	12.61	0.93	5.45
3	ER1a	ExonRegion	0	93.30	12.43	0.00	3.58	0.00	38.19	5.04	2.76	2.28	16.69	2.98	4.64	9.11	39.79	2.31	3.82	3.10	56.32	1.64	15.18	16.40	102.76	11.79	1.08	19.42	22.74	9.16	0.82	6.66
4	E1_Da	NovelBoundary	0	11.21	0.00	0.00	0.00	0.00	1.46	0.00	0.00	1.28	2.04	0.00	0.00	0.00	1.11	0.00	0.00	2.61	0.00	0.00	0.00	0.00	0.00	0.00	2.39	0.00	0.00	0.00	0.00	0.00
5	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	Ix	Intron	0	21.20	2.49	1.30	2.22	0.00	5.95	0.62	1.99	3.20	10.26	2.57	2.49	1.50	18.73	2.14	13.10	4.16	24.12	2.96	0.61	2.43	19.22	1.12	4.65	17.02	1.46	12.17	0.25	10.12
7	Ix_SR1	SilentIntronRegion	0	21.27	2.50	1.30	2.22	0.00	5.97	0.62	2.00	3.21	10.30	2.58	2.50	1.50	18.79	2.14	13.14	4.17	24.19	2.97	0.62	2.44	19.27	1.12	4.67	17.07	1.46	12.21	0.25	10.15
8	E2_Aa	NovelBoundary	0	39.17	0.00	0.00	9.92	0.00	13.81	7.32	2.04	11.57	11.42	16.67	14.52	6.02	29.05	0.00	26.77	8.44	50.73	0.00	0.00	3.81	54.60	0.00	8.79	35.84	3.65	10.29	0.00	12.18
9	ER2a	ExonRegion	0	61.92	23.85	4.03	0.00	0.00	10.73	15.38	2.22	9.44	40.52	11.95	22.77	14.04	24.76	11.47	18.57	17.26	36.25	24.34	8.83	20.05	57.19	22.48	14.69	78.53	36.01	28.68	1.96	9.70