Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HCG25	Gene	0	19.90	5.07	5.40	14.90	9.43	9.08	9.88	5.95	8.34	6.54	3.05	6.21	2.43	14.17	18.96	20.90	32.98	6.15	9.25	4.52	4.71	4.02	2.42	5.59	7.96	4.50	4.01	9.02	5.49
2	450514	Transcript	0	4.41	0.00	1.17	12.19	4.30	2.96	4.66	0.97	1.01	0.88	1.31	0.36	0.00	7.26	1.65	8.09	4.79	7.44	0.00	0.77	2.85	0.53	0.07	2.15	2.19	0.77	0.00	6.49	0.16
3	422366	Transcript	0	25.35	3.84	8.39	12.41	13.67	11.41	10.62	3.75	12.80	9.61	2.39	8.27	0.80	22.52	11.12	26.22	52.52	4.51	7.64	4.49	5.05	3.54	1.40	7.78	9.86	2.47	5.30	6.42	5.77
4	427196	Transcript	0	3.43	0.95	0.40	0.00	3.71	3.86	0.00	2.33	2.47	4.14	0.20	1.33	0.14	3.17	6.72	0.22	4.36	1.58	3.82	1.00	0.57	1.82	0.00	0.26	2.29	0.37	0.00	3.93	4.47
5	442228	Transcript	0	15.16	6.16	6.95	10.14	6.96	8.92	6.74	7.58	6.45	3.57	1.31	3.82	2.70	21.55	10.28	21.98	33.74	4.87	8.10	0.01	6.02	1.17	2.44	4.57	7.20	2.99	3.56	17.17	3.27
6	IG11_AR1	ActiveIntergenicRegion	0	1.84	1.39	0.00	0.00	0.00	1.61	2.20	2.96	1.88	2.00	0.00	1.91	0.14	12.50	6.52	7.87	7.02	4.78	9.32	1.10	2.07	1.74	0.77	1.81	4.49	1.31	0.39	5.94	2.34
7	IG11_SR2	SilentIntergenicRegion	0	0.87	0.00	0.00	0.00	0.00	2.27	1.47	0.75	1.99	0.00	0.00	0.27	0.00	0.91	0.00	4.28	0.66	0.91	2.30	0.00	0.22	0.00	0.00	0.15	0.40	0.12	0.00	0.00	1.19
8	IG11_SR3	SilentIntergenicRegion	0	0.87	0.88	0.91	0.00	0.00	2.80	0.88	0.40	1.98	1.70	0.00	0.76	0.00	4.62	4.00	5.82	4.49	5.02	7.72	0.27	0.68	0.74	1.23	1.18	2.38	0.48	0.25	3.77	1.18
9	IG11_AR3	ActiveIntergenicRegion	0	1.23	1.52	0.72	0.00	0.58	1.44	2.09	0.74	1.13	2.37	0.00	0.58	0.46	8.03	4.41	6.30	7.87	11.55	5.47	0.33	2.38	2.13	1.28	2.50	6.73	0.76	1.73	3.48	1.25
10	IG11_SR4	SilentIntergenicRegion	0	3.27	0.65	0.62	0.36	0.74	1.46	1.63	1.58	0.99	2.39	0.72	1.58	0.85	7.77	3.31	7.02	8.40	6.27	5.11	1.11	2.01	2.90	1.27	1.05	2.98	1.40	1.38	3.71	2.42
11	IG11_AR4	ActiveIntergenicRegion	0	2.48	0.00	1.50	4.30	0.00	0.43	0.60	0.00	0.19	1.16	0.00	0.92	0.00	8.75	3.29	4.79	7.89	4.01	0.00	0.83	1.90	1.62	0.54	0.92	2.84	0.94	0.55	1.37	0.51
12	ER1a	ExonRegion	0	4.41	0.00	1.17	12.19	4.30	2.96	4.66	0.97	1.01	0.88	1.31	0.36	0.00	7.26	1.65	8.09	4.79	7.44	0.00	0.77	2.85	0.53	0.07	2.15	2.19	0.77	0.00	6.49	0.16
13	E1_Ab	KnownBoundary	0	2.65	0.00	6.13	20.71	13.71	4.99	11.67	0.00	1.28	2.04	3.23	2.92	0.00	14.22	0.00	10.71	17.13	13.87	0.00	3.47	1.93	0.00	2.36	0.00	3.18	0.00	0.00	6.02	4.75
14	E1_Ac	KnownBoundary	0	11.27	0.00	3.79	64.49	13.56	1.65	2.92	5.08	2.71	0.00	0.00	4.67	0.00	6.40	0.00	24.86	4.68	0.00	0.00	14.97	4.09	4.67	4.24	0.00	1.93	4.29	0.00	0.00	1.58
15	ER1b	ExonRegion	0	12.68	0.00	3.65	48.75	17.44	6.64	11.25	3.99	3.18	1.44	2.38	1.34	0.00	12.62	5.60	27.21	8.18	15.47	0.00	11.01	5.23	1.80	3.62	0.00	2.98	4.32	3.36	5.84	1.34
16	ER1c	ExonRegion	0	36.66	5.29	10.57	71.89	67.55	11.53	13.77	12.64	7.08	2.59	2.26	8.47	0.99	19.66	21.07	49.80	16.32	15.68	19.33	19.25	1.45	9.29	7.02	0.00	8.33	11.91	11.98	21.05	4.39
17	E1_Da	NovelBoundary	0	2.30	0.00	12.61	30.63	13.26	2.95	2.69	0.00	2.65	0.00	2.88	4.46	0.00	19.28	0.00	10.63	58.68	9.25	0.00	3.72	1.72	0.00	0.00	5.98	5.64	10.90	0.00	6.34	8.45
18	E1a_E2a	KnownJunction	0	5.54	0.00	12.36	0.00	20.78	0.00	2.92	0.00	0.00	0.00	1.17	5.06	1.97	8.24	8.37	0.00	18.77	0.00	0.00	14.22	0.00	3.89	0.00	0.00	1.40	4.38	0.00	1.75	2.51
19	I1	Intron	0	5.71	2.45	1.27	2.73	1.86	5.76	4.60	2.10	2.78	4.40	2.26	1.41	0.00	13.44	5.60	9.44	6.25	9.53	6.08	8.39	5.43	4.80	0.00	2.46	7.62	3.59	0.70	5.58	3.57
20	I1_SR1	SilentIntronRegion	0	5.80	2.49	1.29	2.77	1.89	5.84	4.67	2.13	2.82	4.46	2.30	1.43	0.00	13.64	5.69	9.59	6.34	9.68	6.17	8.52	5.51	4.88	0.00	2.49	7.72	3.64	0.71	5.67	3.62
21	E2_Aa	NovelBoundary	0	16.75	0.00	6.38	10.57	0.00	35.87	27.81	0.00	14.95	9.55	2.50	7.32	0.00	26.96	35.68	57.91	46.03	19.26	24.28	8.27	8.94	4.28	8.96	14.59	17.88	5.62	7.11	17.25	1.29
22	ER2a	ExonRegion	0	22.98	6.73	12.14	7.39	11.66	7.41	9.82	8.49	4.39	5.01	4.51	11.35	1.07	21.71	18.26	28.39	43.39	10.10	8.64	4.92	4.48	4.47	3.69	5.08	13.85	13.86	15.68	19.25	6.24
23	E2_Da	NovelBoundary	0	5.66	4.85	1.49	0.00	0.00	7.48	2.92	0.00	6.43	5.59	3.01	9.82	0.00	17.30	0.00	3.37	18.73	0.00	8.09	8.19	5.74	0.00	2.51	5.62	0.00	1.80	0.00	5.62	1.39
24	E2a_E3b	KnownJunction	0	23.71	0.00	10.04	0.00	20.93	3.57	8.64	2.54	9.62	7.19	1.33	6.96	0.00	19.68	0.00	14.46	26.83	4.62	0.00	3.39	2.01	2.09	0.00	5.86	10.42	4.08	8.60	3.77	4.85
25	E2a_E3c	KnownJunction	0	14.75	0.00	0.92	0.00	6.04	0.00	0.00	1.99	0.00	0.00	0.00	2.98	0.00	2.50	0.00	0.00	15.73	0.00	0.00	8.19	1.72	0.00	0.00	0.00	7.31	0.00	0.00	0.00	1.68
26	I2	Intron	0	5.44	2.58	1.56	0.00	1.30	4.59	2.69	1.47	3.22	4.82	0.64	4.28	0.00	11.72	6.63	12.13	15.94	9.73	5.54	1.47	4.38	1.20	3.14	4.88	4.96	2.73	0.49	6.53	2.14
27	I2_SR1	SilentIntronRegion	0	5.47	2.59	1.57	0.00	1.31	4.61	2.71	1.48	3.23	4.84	0.64	4.30	0.00	11.78	6.65	12.19	16.03	9.77	5.57	1.48	4.40	1.21	3.15	4.91	4.99	2.74	0.49	6.56	2.15
28	E3_Aa	NovelBoundary	0	4.72	11.05	3.36	20.71	0.00	7.14	9.38	0.00	12.33	13.58	2.50	4.76	0.00	20.41	8.37	14.61	36.08	5.39	8.09	7.53	7.78	6.37	6.25	8.19	1.93	2.19	2.24	11.64	3.10
29	ER3a	ExonRegion	0	0.06	0.00	0.54	0.00	0.08	0.47	0.04	0.03	0.78	0.02	0.05	0.01	1.11	0.06	2.42	0.05	1.20	0.49	0.01	0.02	0.00	0.01	0.00	1.01	0.26	0.01	0.02	0.02	0.01
30	E3_Ab	KnownBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E3_Ac	KnownBoundary	0	63.70	64.67	73.45	10.14	16.36	51.72	38.62	50.66	70.95	78.49	45.43	53.73	59.49	62.13	35.68	71.83	153.18	27.74	56.65	18.86	8.70	66.41	84.02	71.72	54.14	43.73	53.03	50.46	66.56
32	ER3b	ExonRegion	0	23.88	0.00	8.34	1.04	21.35	5.70	12.09	12.62	10.27	7.63	3.57	5.83	5.20	18.79	9.60	16.27	34.92	14.43	4.53	6.42	1.83	3.61	0.00	5.22	12.46	3.14	7.33	7.92	4.60
33	ER3c	ExonRegion	0	44.09	4.36	7.41	13.47	25.38	7.61	19.39	14.92	12.17	9.10	5.52	9.52	3.84	23.20	21.52	34.55	52.28	12.04	13.24	8.22	4.47	6.64	6.66	6.61	14.76	10.51	6.50	15.46	6.88
34	E3_Da	NovelBoundary	1	413.96	237.24	293.40	325.48	208.09	185.39	112.94	266.99	427.58	292.64	166.97	206.50	313.70	470.25	278.25	273.33	558.59	271.63	339.21	217.25	149.81	490.11	271.27	622.62	291.15	272.50	101.58	262.98	352.42
35	E3a_E4a	KnownJunction	0	10.74	0.00	0.92	0.00	0.00	0.00	2.92	0.00	0.00	3.44	0.00	3.01	1.40	1.99	0.00	0.00	5.40	0.00	0.00	0.00	0.00	2.19	0.00	2.69	0.00	1.76	0.00	0.00	0.00
36	E3a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
37	E3a_E4c	KnownJunction	1	30.26	12.31	13.35	20.28	13.85	17.38	13.45	15.13	12.12	7.11	2.56	7.62	4.30	43.05	18.14	43.91	66.29	9.25	16.18	0.00	12.03	2.33	4.88	8.13	14.13	5.97	7.11	34.33	6.54
38	Ix	Intron	0	9.15	5.35	1.19	0.00	5.79	11.41	1.91	6.11	7.45	6.51	2.54	4.10	3.38	10.41	10.26	10.43	19.48	4.11	9.09	2.90	5.08	5.13	1.29	5.10	4.75	5.22	2.17	6.57	1.43
39	Ix_SR1	SilentIntronRegion	0	9.32	6.42	1.37	0.00	6.55	12.46	2.20	6.43	8.10	7.61	2.95	4.71	3.44	11.30	11.52	10.76	21.32	4.43	9.81	3.51	5.42	4.59	1.31	6.01	4.95	4.26	2.62	6.68	1.70
40	Ix_AR1	ActiveIntronRegion	0	9.29	0.20	0.37	0.00	2.42	7.08	0.61	5.13	4.77	1.36	0.65	1.24	3.46	6.79	4.58	9.66	11.87	2.89	6.31	0.00	3.85	8.63	1.32	0.85	4.20	11.00	0.00	6.77	0.16
41	E4_Aa	NovelBoundary	0	19.82	0.00	5.36	0.00	0.00	7.25	2.92	0.00	4.90	0.00	1.55	1.60	0.00	9.22	9.97	14.53	26.99	9.25	8.09	0.00	3.53	1.85	0.00	2.21	8.98	11.11	0.00	8.85	1.72
42	ER4a	ExonRegion	0	10.72	1.64	0.10	0.22	0.00	6.79	2.11	0.00	5.63	6.34	4.72	6.75	0.75	6.62	4.84	8.82	17.97	1.78	4.53	2.43	2.53	3.20	2.71	6.91	5.78	1.14	0.00	10.50	2.64
43	E4_Ab	KnownBoundary	1	266.38	131.37	171.74	262.71	22.11	154.05	85.48	134.62	192.49	229.21	116.26	157.53	150.34	211.75	131.35	249.00	416.26	184.94	299.20	137.53	109.86	220.24	295.30	244.76	205.38	165.09	115.60	194.24	201.22
44	E4_Ac	KnownBoundary	1	197.90	134.96	175.28	235.75	123.06	103.63	102.87	152.03	227.91	180.75	146.47	180.18	191.48	225.27	104.24	227.35	376.81	138.70	379.90	131.49	85.07	229.62	231.52	229.21	183.55	229.38	92.29	195.41	219.08
45	ER4b	ExonRegion	0	18.51	0.30	0.20	2.33	2.04	6.12	5.86	0.33	7.10	5.84	3.57	9.16	0.41	8.95	1.78	17.49	25.18	4.59	3.91	4.47	2.46	5.98	0.74	4.89	2.73	1.93	0.50	5.78	7.93
46	ER4c	ExonRegion	0	43.73	2.35	4.91	21.94	22.63	29.69	24.71	5.05	16.60	14.40	6.66	14.14	5.94	29.21	49.61	53.58	66.14	11.38	12.80	8.91	10.96	15.50	7.39	12.29	19.23	5.75	12.04	23.47	12.65
47	E4_Da	KnownBoundary	0	16.52	3.78	0.00	8.63	20.04	10.01	15.73	0.00	5.30	3.44	1.46	1.48	1.34	6.67	17.14	20.43	10.26	4.62	0.00	0.00	5.41	9.38	2.12	5.62	8.41	0.00	6.86	10.24	1.65
48	ER4d	ExonRegion	0	60.65	14.90	18.87	52.01	11.72	27.05	32.00	17.84	22.85	19.18	4.86	18.61	10.45	41.12	64.21	56.42	100.23	12.45	23.52	6.18	13.86	9.29	4.53	14.48	26.88	9.16	7.51	22.96	18.32
49	E4_Db	KnownBoundary	0	54.92	4.27	11.36	31.92	0.00	19.03	2.29	7.61	21.56	20.57	5.16	16.02	4.84	25.57	18.54	35.19	107.59	14.64	8.09	4.13	16.37	4.72	9.90	14.59	8.60	3.73	0.00	9.93	10.33
50	E4b_E5a	KnownJunction	0	18.34	4.85	6.33	18.98	13.56	1.50	9.67	8.91	1.46	5.27	3.10	8.04	1.62	9.84	8.17	0.00	8.85	9.25	16.18	0.00	0.00	0.00	2.46	2.57	6.14	2.02	6.26	4.04	6.60
51	ER4e	ExonRegion	0	26.98	7.68	6.73	24.83	6.41	19.25	12.60	4.96	15.98	12.03	3.44	9.59	1.60	25.36	22.23	37.98	78.21	4.39	15.29	5.59	8.09	5.00	2.81	9.70	9.30	0.86	2.00	9.07	6.69
52	E4_Dc	NovelBoundary	0	263.61	149.01	165.66	239.20	59.54	142.08	109.91	152.03	207.59	183.59	160.04	108.67	131.61	318.43	151.88	276.24	334.51	239.91	202.31	164.74	94.14	287.23	278.61	344.24	134.08	137.45	112.22	146.84	148.63
53	Ix	Intron	0	5.81	7.81	1.87	2.29	1.17	7.12	3.69	1.32	7.86	5.41	2.37	2.02	1.03	4.54	11.64	11.70	13.08	3.10	10.18	4.11	2.84	0.43	0.72	9.77	3.98	1.25	1.61	2.47	3.89
54	Ix_SR1	SilentIntronRegion	0	5.83	7.85	1.87	2.30	1.17	7.15	3.71	1.32	7.90	5.43	2.38	2.03	1.04	4.56	11.69	11.72	13.14	3.11	10.22	4.13	2.86	0.43	0.72	9.81	4.00	1.25	1.61	2.46	3.91
55	E5_Aa	NovelBoundary	0	2.89	12.89	3.59	0.00	0.00	1.57	0.00	0.00	7.58	3.56	1.42	5.75	1.62	3.06	16.54	0.00	12.40	4.62	0.00	0.00	5.50	0.00	0.00	14.12	7.27	2.06	4.87	6.52	3.17
56	ER5a	ExonRegion	0	18.53	9.88	5.71	10.89	5.22	6.21	12.65	8.68	9.53	7.11	4.68	4.91	4.10	10.09	30.27	12.42	17.31	7.60	12.15	4.77	7.16	3.82	1.73	7.11	7.86	7.16	4.40	6.59	7.66
57	E5_Da	KnownBoundary	0	13.09	9.40	2.77	0.00	13.26	12.32	2.80	11.25	10.48	17.86	1.33	0.00	1.31	13.36	35.08	5.74	26.97	4.62	8.09	10.75	1.85	6.71	0.00	6.70	9.70	3.78	0.00	14.06	19.35
58	ER5b	ExonRegion	0	6.86	1.90	0.80	0.00	7.42	7.73	0.00	4.66	4.94	8.28	0.40	0.00	0.29	6.35	13.44	0.45	8.73	3.15	7.64	2.00	1.14	3.65	0.00	0.53	4.57	0.73	0.00	6.16	8.95