Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HLA-DQB2	Gene	0	39.36	4.02	437.90	30.37	96.13	16.85	5.07	301.92	842.33	12.91	321.92	188.95	35.40	195.90	24.59	23.03	291.84	224.66	46.88	28.63	248.05	401.32	14.42	29.96	75.14	14.13	399.83	135.08	759.47
2	429950	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3	454742	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	437316	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	435145	Transcript	0	1.21	0.36	1.42	0.00	0.00	1.07	0.13	0.81	0.50	0.66	0.15	0.29	0.24	0.93	4.84	0.91	1.88	3.63	1.74	0.46	10.41	0.70	0.28	0.44	0.37	1.14	0.48	1.47	10.69
6	411527	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	427449	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	0	0.43	0.00	68.56	9.51	3.99	10.52	1.61	0.00	1.63	4.40	0.00	4.14	0.00	6.39	0.00	7.85	1.25	2.18	0.00	6.18	52.78	11.45	3.62	5.06	1.07	5.11	2.38	0.00	312.59
9	ER1b	ExonRegion	0	2.14	0.00	142.50	14.63	9.96	22.68	4.03	0.00	3.37	11.55	0.00	9.90	0.00	12.70	0.00	18.98	4.01	5.46	0.00	11.24	159.04	29.75	9.04	10.76	2.86	7.86	9.16	0.00	675.78
10	ER1c	ExonRegion	0	12.04	5.01	371.38	32.73	14.11	45.63	4.70	1.40	7.30	24.17	0.00	15.46	0.00	31.25	0.00	43.56	7.85	15.27	7.33	27.37	599.90	103.40	25.62	20.28	7.56	30.91	24.64	2.48	1986.16
11	E1_Ad	KnownBoundary	0	35.51	19.29	580.72	43.14	5.89	58.13	5.55	12.69	27.41	42.30	0.00	23.04	0.00	57.21	0.00	63.26	11.93	13.87	0.00	35.97	929.76	141.09	160.50	32.66	45.84	47.89	32.35	6.83	2814.66
12	E1_Ae	KnownBoundary	0	6.02	0.00	79.78	0.00	0.00	21.68	0.00	0.00	1.31	6.11	0.00	0.00	0.00	5.58	0.00	11.47	2.79	0.00	0.00	4.13	210.74	16.58	7.19	8.31	1.93	8.71	6.91	0.00	617.52
13	ER1d	ExonRegion	0	15.09	4.93	456.82	23.77	2.28	35.80	2.02	1.46	4.63	15.88	0.00	14.38	0.00	28.46	0.00	39.86	10.02	3.75	0.75	24.24	675.57	96.60	25.92	17.57	7.92	31.43	23.89	2.58	2183.65
14	ER1e	ExonRegion	0	4.03	2.21	108.15	0.32	0.00	9.29	0.24	0.18	2.37	5.13	0.66	2.54	0.00	10.84	0.00	13.07	1.72	3.20	3.84	11.40	119.07	36.86	3.81	8.21	1.66	4.00	3.50	0.00	542.63
15	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E1a_E2a	KnownJunction	0	13.33	9.31	21.38	0.00	0.00	28.51	0.00	1.99	4.45	13.74	0.00	3.64	0.00	23.24	0.00	24.02	0.00	0.00	0.00	40.69	218.24	114.79	5.02	16.39	3.18	3.86	2.53	0.00	498.17
17	ER2a	ExonRegion	0	17.86	5.12	283.75	21.36	73.10	26.63	3.55	120.77	428.68	14.33	66.62	81.31	14.27	81.18	9.98	28.39	99.22	128.22	22.21	26.86	342.76	208.77	17.80	11.80	28.66	22.07	74.52	24.74	1276.07
18	E2_Da	NovelBoundary	0	0.00	0.00	5.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	E2a_E3a	KnownJunction	0	180.61	4.85	3842.90	805.83	2742.29	13.31	2.46	3251.01	8938.88	11.66	2128.15	2662.21	420.00	1820.47	147.50	7.19	3772.62	259.69	8.09	43.58	590.87	3751.07	27.88	16.63	554.41	18.07	2043.26	778.35	1174.75
20	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	Ix	Intron	0	2.45	0.08	0.54	0.00	0.24	1.47	3.16	1.47	4.79	6.47	1.19	1.24	0.00	3.48	0.27	8.21	4.42	5.66	5.96	0.53	9.83	1.08	0.00	2.46	3.56	0.27	0.59	0.41	2.33
22	Ix_SR1	SilentIntronRegion	0	2.46	0.08	0.54	0.00	0.24	1.47	3.16	1.47	4.80	6.47	1.19	1.24	0.00	3.48	0.27	8.21	4.42	5.67	5.97	0.53	9.84	1.08	0.00	2.47	3.56	0.27	0.59	0.41	2.33
23	E3_Aa	NovelBoundary	0	3.01	0.00	11.93	0.00	22.11	0.00	0.00	10.05	22.47	0.00	12.59	2.65	1.72	0.00	0.00	3.82	118.51	23.50	0.00	0.00	2.05	29.56	0.00	0.00	3.79	0.00	6.16	11.14	5.28
24	ER3a	ExonRegion	0	131.09	9.94	1349.73	123.36	428.17	43.91	22.90	943.69	2322.03	48.38	972.67	675.73	142.22	703.08	77.46	65.49	1163.27	862.66	157.57	72.60	430.66	1333.71	30.74	112.08	287.66	26.56	1248.82	351.75	1294.91
25	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E3a_E5a	KnownJunction	0	0.00	0.00	27.38	0.00	0.00	5.22	2.12	0.00	2.86	3.83	0.00	1.33	0.00	5.05	0.00	0.00	2.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.41	0.00	0.00	1.39
27	E3a_E5b	KnownJunction	0	5.60	0.00	107.38	0.00	0.00	6.60	0.00	0.00	6.30	0.00	0.00	10.48	0.00	24.93	0.00	0.00	2.99	0.00	8.09	0.00	3.81	2.29	0.00	8.49	5.23	11.37	7.16	0.00	4.92
28	E4_Aa	NovelBoundary	0	0.00	0.00	15.82	0.00	0.00	0.00	0.00	2.14	13.40	0.00	10.88	17.02	0.00	16.33	0.00	0.00	29.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.62	0.00	0.00
29	ER4a	ExonRegion	0	270.12	10.36	2913.89	167.86	497.89	21.09	6.48	2869.18	8553.83	21.24	3300.70	1532.30	255.38	1485.03	183.16	62.01	2145.71	1588.82	381.76	88.57	715.58	2966.77	32.73	132.48	527.58	8.27	3940.37	1522.00	1128.39
30	E4_Da	NovelBoundary	0	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.77
31	E4a_E5a	KnownJunction	0	13.51	8.43	102.08	9.92	0.00	7.06	0.00	0.00	0.00	7.51	0.00	6.11	0.00	7.93	7.37	34.12	2.09	0.00	0.00	45.24	219.12	90.33	17.68	7.30	5.15	8.11	15.01	0.00	1063.07
32	E4a_E5b	NovelJunction	0	0.00	0.00	11.56	0.00	0.00	5.87	0.00	2.44	43.21	0.00	4.62	1.63	0.00	1.11	0.00	0.00	4.66	0.00	0.00	0.00	53.47	24.31	0.00	0.00	3.83	0.00	6.41	2.25	130.90
33	Ix	Intron	0	0.00	0.35	2.00	0.00	0.00	0.15	0.00	0.60	2.38	0.00	0.13	0.00	0.00	0.30	0.00	0.00	1.95	4.48	0.35	0.00	5.75	7.86	0.00	0.00	0.00	0.17	0.00	0.53	3.36
34	Ix_SR1	SilentIntronRegion	0	0.00	0.35	2.01	0.00	0.00	0.15	0.00	0.60	2.39	0.00	0.13	0.00	0.00	0.30	0.00	0.00	1.96	4.50	0.35	0.00	5.78	7.89	0.00	0.00	0.00	0.17	0.00	0.54	3.37
35	E5_Aa	NovelBoundary	0	37.10	83.38	11.46	0.00	28.59	7.40	14.19	4.78	26.22	29.28	9.24	5.30	1.62	54.77	0.00	70.15	188.11	0.00	0.00	36.55	38.43	37.44	31.62	46.42	31.07	8.71	12.52	13.21	27.83
36	ER5a	ExonRegion	0	12.95	9.72	137.03	4.57	0.00	15.98	2.02	0.61	16.62	18.89	0.20	8.14	0.00	17.50	1.63	28.79	8.06	21.49	16.41	63.12	289.50	91.56	29.08	7.71	5.78	21.87	19.15	1.63	1762.60
37	ER5b	ExonRegion	0	1.21	0.36	1.42	0.00	0.00	1.07	0.13	0.81	0.50	0.66	0.15	0.29	0.24	0.93	4.84	0.91	1.88	3.63	1.74	0.46	10.41	0.70	0.28	0.44	0.37	1.14	0.48	1.47	10.69
38	E5_Ab	KnownBoundary	0	2.24	0.00	2.69	0.00	0.00	0.00	0.00	5.03	8.07	0.00	1.55	1.60	0.00	1.17	0.00	0.00	7.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.97	4.54	11.69
39	ER5c	ExonRegion	0	24.90	5.22	221.51	0.00	0.00	42.61	12.84	3.92	16.25	25.03	4.23	14.54	0.00	60.99	8.26	50.45	11.69	6.61	3.13	65.01	738.34	151.22	56.13	35.16	31.46	70.32	27.87	2.24	2466.24
40	E5_Db	KnownBoundary	0	21.59	9.31	120.16	0.00	0.00	33.99	2.35	0.00	28.63	8.67	0.00	4.16	0.00	42.27	8.97	65.10	12.52	10.02	0.00	40.03	1056.07	116.39	25.17	44.38	30.27	28.24	20.97	3.41	1567.91
41	ER5d	ExonRegion	0	15.01	4.95	195.38	2.52	1.72	14.47	2.75	0.30	9.52	5.82	0.00	5.29	0.00	24.61	2.95	16.08	4.45	3.25	1.69	38.74	305.56	122.18	17.30	22.19	9.99	17.75	13.74	0.65	988.87