Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GTF2H4	Gene	0	28.39	12.37	20.66	29.68	12.81	24.50	20.93	16.20	15.03	26.44	23.99	23.54	26.75	19.48	12.02	18.70	42.64	20.93	20.57	7.78	23.44	17.35	24.81	16.46	9.54	14.31	14.33	13.53	19.98
2	259895	Transcript	0	23.13	9.42	4.10	29.25	15.60	8.97	8.01	3.63	2.60	29.94	19.45	9.44	7.52	3.94	2.36	15.12	12.31	11.85	6.31	0.30	18.84	5.08	19.08	6.34	2.41	6.08	21.64	4.03	7.06
3	376316	Transcript	0	8.14	13.77	3.36	0.00	0.00	27.85	2.57	8.91	5.94	6.83	4.18	6.48	6.50	6.78	9.97	7.04	3.76	4.62	0.00	0.00	37.94	13.47	2.22	8.67	3.86	3.73	2.04	1.98	1.35
4	453897	Transcript	0	1.12	0.00	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.00	0.11	0.00	0.00	0.00	0.00
5	487746	Transcript	0	29.82	5.05	13.63	20.39	2.73	11.86	10.66	17.43	13.65	10.26	5.28	12.12	1.26	19.96	25.54	13.44	33.19	25.82	8.02	13.37	7.04	6.94	1.47	27.60	5.88	6.24	0.24	8.19	6.66
6	483318	Transcript	0	12.12	4.58	4.53	0.94	1.41	4.80	2.87	7.33	5.13	4.80	2.53	6.33	1.54	6.60	10.54	6.64	15.11	11.04	16.14	3.71	4.37	5.45	5.89	9.04	2.02	2.32	2.01	1.01	2.06
7	475845	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	IG12_AR1	ActiveIntergenicRegion	0	0.46	0.00	1.07	0.00	0.00	1.17	0.86	5.09	0.59	5.52	1.52	0.79	0.00	0.87	1.17	1.05	0.00	7.98	0.68	0.00	2.42	0.38	5.38	2.29	1.52	0.67	0.00	0.00	20.03
9	ER1a	ExonRegion	0	23.13	9.42	4.10	29.25	15.60	8.97	8.01	3.63	2.60	29.94	19.45	9.44	7.52	3.94	2.36	15.12	12.31	11.85	6.31	0.30	18.84	5.08	19.08	6.34	2.41	6.08	21.64	4.03	7.06
10	E1_Ab	KnownBoundary	0	5.66	0.00	1.37	17.04	5.75	3.53	0.00	4.08	0.00	5.19	2.75	7.14	2.58	0.00	0.00	9.94	2.70	0.00	0.00	0.00	10.95	6.42	4.04	0.00	0.00	0.00	4.08	3.59	0.00
11	E1_Ac	KnownBoundary	0	27.66	15.12	13.95	92.10	30.21	22.18	31.53	2.29	2.92	43.62	51.82	16.11	25.44	9.39	15.35	25.09	30.30	4.62	8.09	0.00	28.80	13.90	37.38	16.33	2.88	6.61	32.85	14.56	17.27
12	ER1b	ExonRegion	0	77.17	54.20	35.91	190.13	119.56	81.79	78.61	22.09	18.54	149.43	174.35	67.41	92.88	39.91	19.60	105.03	60.10	73.69	97.31	12.65	114.82	36.05	123.87	39.80	37.16	62.08	125.46	61.94	71.14
13	ER1c	ExonRegion	0	110.46	49.21	48.86	148.56	79.80	137.61	82.19	50.54	27.86	135.14	133.90	63.50	99.18	48.37	18.50	87.27	84.72	51.78	84.82	15.05	138.26	63.76	114.92	52.92	43.25	68.53	85.93	56.07	85.16
14	E1_Da	NovelBoundary	1	181.32	55.26	1.40	0.00	0.00	115.10	42.28	70.32	12.70	80.25	44.07	33.76	58.94	38.64	22.52	60.89	39.05	10.79	40.46	33.33	147.49	115.66	17.53	80.57	22.47	18.45	2.39	4.22	48.63
15	E1a_E2a	KnownJunction	0	8.14	13.77	3.36	0.00	0.00	27.85	2.57	8.91	5.94	6.83	4.18	6.48	6.50	6.78	9.97	7.04	3.76	4.62	0.00	0.00	37.94	13.47	2.22	8.67	3.86	3.73	2.04	1.98	1.35
16	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER1d	ExonRegion	1	158.36	90.14	1.12	0.00	0.00	228.69	123.93	64.73	30.83	185.15	119.01	73.47	120.03	39.58	33.38	126.33	72.24	61.57	70.60	31.93	190.28	76.94	74.07	67.46	58.60	63.93	32.53	35.14	100.34
18	ER2a	ExonRegion	0	20.18	19.69	19.28	18.60	20.53	58.24	58.36	8.98	13.59	86.86	111.04	44.69	71.27	14.64	12.72	57.39	66.96	42.61	61.45	2.79	43.15	8.34	104.74	9.36	24.56	53.30	80.21	45.45	60.52
19	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER3a	ExonRegion	0	2.14	3.28	74.48	152.65	59.78	1.37	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.91	0.00	0.00	5.13	0.00	0.00	0.00	0.00	0.00	1.81	0.00	1.43	0.00	0.00	0.00	0.00
21	ER3b	ExonRegion	0	0.80	0.91	42.63	136.53	50.53	1.06	1.06	0.00	0.00	0.00	1.88	2.22	0.00	0.29	5.77	0.00	0.26	0.00	0.00	0.00	0.68	0.00	0.06	0.00	0.25	0.00	1.51	0.00	1.81
22	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER4a	ExonRegion	0	0.00	0.00	1.98	59.33	14.83	0.15	0.00	0.00	0.07	0.00	0.00	0.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.05	0.00	0.67	1.66	1.04	0.00	0.31	0.00	0.21
24	E4a_E5a	KnownJunction	0	2.24	0.00	0.00	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E4a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E5_Aa	NovelBoundary	0	2.95	0.00	13.68	0.00	0.00	6.71	0.00	2.39	4.48	9.55	5.60	5.09	7.99	12.65	15.55	22.26	26.83	4.62	7.87	8.02	43.12	6.90	0.00	10.95	6.90	5.28	10.44	1.93	3.10
29	ER5a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	0.21	0.00	0.00	0.00	0.00
30	E5_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.08	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	2.29	0.00
31	ER6a	ExonRegion	0	0.00	0.00	0.59	6.94	0.05	0.00	0.00	0.00	0.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER7a	ExonRegion	0	0.00	0.00	6.86	1.81	2.74	0.00	0.00	0.12	0.00	0.00	0.00	0.60	0.00	0.00	0.00	0.00	1.70	0.00	0.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.81	0.00
34	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	Ix_AR1	ActiveIntronRegion	0	6.43	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	1.44	0.00	1.24	0.00	1.81	0.00	0.00	3.17	0.45	0.00	0.00	4.28	0.00	0.00	0.00	0.00	4.71	0.00	0.00	0.00
36	Ix_SR2	SilentIntronRegion	0	1.37	0.00	0.00	0.00	0.00	0.73	0.00	0.00	0.00	1.44	0.00	0.73	0.00	0.59	0.00	0.00	1.15	0.00	2.25	0.00	2.24	0.00	0.00	0.76	0.00	1.04	0.00	0.00	0.00
37	ER8a	ExonRegion	0	4.36	0.76	35.82	21.42	4.45	1.25	0.95	1.64	1.10	0.10	0.98	4.45	0.52	2.32	2.50	1.69	17.59	2.83	2.38	0.00	0.43	1.48	1.81	0.65	1.03	0.00	0.00	5.09	0.77
38	E8a_E9a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER9a	ExonRegion	1	15.19	3.05	52.62	0.42	7.22	3.59	6.72	3.26	8.58	6.91	10.54	26.37	13.61	5.02	19.89	5.91	52.54	13.05	8.40	1.87	2.42	0.26	25.00	7.92	5.41	5.17	4.06	22.75	13.91
40	E9a_E10a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER10a	ExonRegion	0	44.78	22.68	11.03	16.80	0.24	37.26	57.11	25.95	39.40	38.62	38.04	61.68	66.51	42.73	14.13	24.98	104.73	30.22	38.85	19.24	28.66	33.33	38.06	34.75	19.98	12.89	8.90	20.90	25.26
42	E10_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E10a_E10c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
44	ER10b	ExonRegion	0	29.82	5.05	13.63	20.39	2.73	11.86	10.66	17.43	13.65	10.26	5.28	12.12	1.26	19.96	25.54	13.44	33.19	25.82	8.02	13.37	7.04	6.94	1.47	27.60	5.88	6.24	0.24	8.19	6.66
45	E10_Ab	KnownBoundary	0	40.58	9.11	26.58	36.24	0.00	3.41	17.91	29.96	7.83	20.69	8.86	13.28	1.97	17.24	23.92	9.03	40.99	33.65	0.00	23.98	1.68	10.60	2.07	30.57	1.63	4.25	2.53	3.95	4.23
46	ER10c	ExonRegion	0	40.45	5.89	18.33	5.69	12.65	10.58	12.48	30.19	12.54	12.97	7.41	17.06	3.32	31.10	21.51	13.10	50.63	34.74	12.57	18.69	9.17	7.50	2.70	27.76	3.38	2.77	0.78	5.69	7.07
47	E10_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
48	ER10d	ExonRegion	0	62.05	25.38	39.79	23.43	3.21	33.17	47.03	35.51	48.29	41.26	23.72	63.74	71.07	73.66	22.19	26.61	133.00	52.52	30.69	22.66	35.63	52.09	40.66	41.88	16.55	31.72	13.00	27.80	49.62
49	E10_Db	KnownBoundary	0	2.65	0.00	0.00	0.00	0.00	1.69	2.80	6.82	0.00	0.00	0.00	0.00	0.00	2.46	0.00	3.44	9.95	4.50	0.00	3.64	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	0.00
50	E10b_E10e	KnownJunction	0	238.89	124.39	172.36	185.50	26.38	173.38	208.03	139.29	209.91	171.97	165.32	224.57	285.04	217.18	87.10	139.23	381.89	196.76	161.40	98.33	185.99	206.33	196.26	158.69	80.92	133.03	54.07	146.79	148.43
51	ER10e	ExonRegion	0	1.34	0.00	2.00	0.00	0.00	1.14	2.17	1.36	0.00	0.00	0.00	0.82	0.00	1.59	0.00	4.93	6.74	3.30	8.46	0.47	0.00	0.00	0.00	2.10	0.00	0.00	0.00	0.00	0.00
52	E10_Ad	KnownBoundary	0	0.00	0.00	2.54	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	2.10	0.00	0.00	6.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00
53	ER10f	ExonRegion	0	1.96	1.16	3.20	4.46	4.22	1.40	1.82	1.56	1.74	1.60	2.02	2.73	2.61	2.96	0.85	1.33	7.63	2.03	1.59	0.78	1.87	2.06	3.48	1.19	0.69	1.00	0.56	1.10	1.62
54	E10_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	7.37	0.00	0.00	6.92	0.00	0.00	1.61	1.45	0.00	1.06	0.00	3.21	2.68	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25
55	ER10g	ExonRegion	0	104.83	46.80	110.98	43.20	20.46	64.36	72.50	80.75	81.93	61.19	53.98	105.14	127.60	109.57	37.05	41.93	201.53	68.69	57.79	28.15	72.59	105.42	70.61	62.91	34.08	36.46	25.87	39.20	64.63
56	E10_Dc	KnownBoundary	0	39.34	23.46	19.68	27.39	0.00	8.63	13.56	11.60	7.98	19.77	8.86	9.31	9.04	25.01	9.97	3.60	34.06	33.52	8.09	4.05	3.49	14.93	27.28	24.23	11.67	11.76	7.26	6.29	7.26
57	ER10h	ExonRegion	0	28.89	11.88	8.55	18.45	3.37	4.50	2.45	15.32	15.75	2.71	1.56	18.86	14.29	25.27	6.12	2.06	35.01	8.48	8.70	9.51	4.08	26.18	7.23	12.94	1.78	2.68	0.00	1.10	12.06
58	E10d_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
59	ER11a	ExonRegion	0	101.10	46.88	12.83	16.15	0.00	68.19	35.49	89.68	74.88	53.42	18.62	68.62	83.81	55.71	23.69	41.28	150.24	52.65	36.87	43.10	83.62	93.03	40.12	45.89	23.14	37.20	1.11	16.67	54.78
60	E11_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	E11a_E11b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER11b	ExonRegion	0	22.90	9.16	7.06	1.88	2.82	8.46	3.57	13.30	10.27	9.59	5.06	11.83	3.08	11.61	21.08	8.36	23.48	18.78	23.82	6.95	8.74	10.90	11.78	15.99	4.04	4.63	4.02	2.03	4.11
63	E11_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
64	ER11c	ExonRegion	0	29.84	18.74	7.64	5.72	4.09	19.67	35.04	21.79	30.05	30.26	19.97	40.01	44.72	21.23	34.03	23.98	63.69	49.51	34.47	8.65	27.50	11.16	28.31	10.92	6.45	19.69	8.97	23.61	30.70
65	E11b_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	ER12a	ExonRegion	0	1.95	0.00	14.84	8.65	3.37	0.86	0.47	1.00	1.44	1.55	0.88	2.79	0.84	0.66	1.38	1.67	5.14	2.55	2.13	0.00	0.11	0.71	2.30	1.33	0.74	0.01	3.91	1.50	0.12