Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NFKBIL1	Gene	0	51.00	23.42	49.85	13.15	38.22	21.28	14.97	29.98	24.61	33.94	11.60	20.42	40.16	41.27	15.68	52.93	47.03	108.48	30.22	47.10	22.98	46.51	45.36	54.64	31.27	36.05	31.03	35.61	57.93
2	376146	Transcript	1	0.61	0.00	2.24	1.76	4.56	1.68	0.00	0.05	0.00	2.25	4.52	2.80	4.79	6.57	5.99	3.65	12.70	7.19	13.73	2.70	1.32	3.21	5.04	3.43	2.88	15.22	6.49	40.91	10.53
3	376148	Transcript	0	10.72	1.19	3.26	0.00	30.04	3.04	2.32	3.46	1.91	5.03	1.12	1.35	3.11	4.21	4.41	12.65	4.13	15.30	8.50	6.47	1.69	12.29	1.32	9.91	2.38	2.57	0.56	3.21	6.95
4	376145	Transcript	1	8.38	8.63	16.22	0.00	0.00	16.15	4.69	14.48	19.34	18.14	7.81	9.52	18.44	14.73	0.00	24.10	13.35	33.01	8.09	0.00	9.87	32.96	18.12	25.78	15.99	7.55	13.02	55.63	23.51
5	496233	Transcript	0	0.00	0.00	0.00	1.40	0.00	5.28	0.00	0.01	0.22	0.28	0.00	0.25	1.20	0.21	0.09	0.01	0.08	0.52	0.00	0.00	0.00	0.00	0.00	0.43	0.04	0.95	0.01	0.35	0.01
6	473655	Transcript	0	4.36	0.00	2.87	0.00	0.00	1.32	0.93	0.00	1.40	5.91	2.88	2.87	0.05	7.21	0.41	2.74	8.95	7.24	0.00	1.25	7.22	2.06	0.81	5.46	0.39	12.40	6.58	1.35	4.42
7	ER1a	ExonRegion	1	1.22	0.00	2.09	3.52	2.92	3.36	0.00	0.11	0.00	2.94	1.64	1.24	2.14	9.46	3.02	7.30	11.27	14.38	11.27	5.41	0.88	2.67	3.53	3.99	3.83	17.82	4.47	33.70	10.09
8	E1_Da	NovelBoundary	0	2.60	0.00	1.05	0.00	0.00	0.00	2.17	0.00	12.55	1.80	0.00	9.76	0.00	11.50	41.46	9.87	11.55	23.12	24.28	6.45	3.53	2.48	2.51	3.05	3.67	12.62	0.00	4.58	11.79
9	E1a_E3a	KnownJunction	1	0.00	0.00	2.39	0.00	6.19	0.00	0.00	0.00	0.00	1.56	7.40	4.37	7.45	3.68	8.97	0.00	14.14	0.00	16.18	0.00	1.76	3.74	6.55	2.87	1.93	12.62	8.50	48.12	10.96
10	Ix	Intron	0	2.39	3.40	1.49	0.00	1.09	3.37	0.67	0.41	3.25	1.13	0.66	3.02	0.43	4.34	3.89	8.49	5.65	16.77	20.28	2.37	2.38	1.20	1.61	4.79	1.27	8.75	0.82	2.54	3.87
11	Ix_AR1	ActiveIntronRegion	0	3.22	4.06	1.67	0.00	1.22	4.12	0.00	0.92	3.08	2.53	1.19	1.70	0.00	4.87	5.98	7.44	6.34	18.54	17.57	2.56	2.14	1.35	2.71	5.38	2.50	11.00	0.00	4.48	3.00
12	Ix_AR2	ActiveIntronRegion	0	2.08	3.00	1.62	0.00	1.19	3.34	1.47	0.00	3.98	0.00	0.29	4.52	0.94	4.43	2.67	10.89	5.66	18.25	25.95	2.68	2.89	1.31	0.88	4.80	0.35	7.99	1.78	1.19	5.50
13	Ix_SR1	SilentIntronRegion	0	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.84	0.00	0.00	2.96	0.00	1.81	0.00	2.53	3.51	2.34	7.27	0.00	1.43	0.00	0.00	2.15	0.00	3.03	0.00	0.00	0.14
14	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	7.37	1.46	0.00	0.00	1.46	3.64	0.00	0.00	0.00	4.36	0.00	3.82	3.60	23.12	0.00	0.00	0.00	7.00	0.00	0.00	3.45	10.00	1.89	6.43	8.55
15	Ix_AR3	ActiveIntronRegion	0	0.00	0.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.44	0.00	0.84	0.00	0.72	0.57	0.00	3.56	0.00	0.61	0.00	0.00	2.00	0.00	0.00	0.00	0.00	0.00
16	ER2a	ExonRegion	0	10.72	1.19	3.26	0.00	30.04	3.04	2.32	3.46	1.91	5.03	1.12	1.35	3.11	4.21	4.41	12.65	4.13	15.30	8.50	6.47	1.69	12.29	1.32	9.91	2.38	2.57	0.56	3.21	6.95
17	E2_Ab	KnownBoundary	0	19.29	3.49	6.50	0.00	70.30	5.49	2.86	7.07	4.51	10.91	5.79	0.00	1.56	9.68	8.37	19.51	6.98	33.13	16.18	11.58	2.05	29.56	0.00	17.17	6.93	4.16	0.00	6.43	11.42
18	E2_Ac	KnownBoundary	0	53.56	14.35	11.83	81.75	122.02	33.07	30.67	25.98	11.79	47.62	10.15	17.29	23.47	23.26	0.00	106.95	12.34	130.36	104.98	66.90	29.84	32.38	60.77	36.25	32.20	34.55	16.60	26.51	43.18
19	ER2b	ExonRegion	0	55.89	18.25	41.10	48.48	117.53	28.00	24.19	22.98	10.53	34.97	7.36	20.34	29.59	23.08	3.32	86.51	24.45	74.40	50.79	55.59	27.15	40.53	47.28	42.23	19.69	22.53	12.69	26.44	39.32
20	E2_Ad	KnownBoundary	0	89.78	22.98	89.47	41.20	113.62	27.89	30.04	27.22	15.10	40.15	3.16	25.03	43.24	20.41	0.00	86.52	52.40	55.61	32.37	39.28	31.65	36.12	61.86	32.18	9.51	15.49	22.21	34.55	46.45
21	ER2c	ExonRegion	0	89.11	26.28	64.28	78.35	144.23	42.22	42.43	34.72	17.12	55.34	9.58	29.98	50.72	33.56	0.00	120.51	46.60	103.06	63.15	70.00	43.61	44.55	84.73	50.71	24.37	32.78	23.20	40.44	62.00
22	ER2d	ExonRegion	0	39.30	11.86	66.21	32.18	73.56	20.04	17.72	33.90	16.04	26.77	6.32	16.74	36.43	35.32	8.34	34.05	44.25	49.94	26.80	26.67	27.39	52.00	45.49	42.74	19.20	36.15	20.27	36.68	56.89
23	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.95	0.00	3.04	0.00	1.22	0.00	3.37	7.05	13.87	0.00	11.50	2.01	0.00	0.00	13.04	3.11	2.10	11.38	0.00	6.54
24	E2a_E3a	KnownJunction	0	43.41	4.85	31.42	0.00	34.19	12.62	7.27	19.01	10.51	16.58	7.53	17.86	39.04	19.70	0.00	13.54	30.21	23.12	32.37	14.22	9.35	65.73	25.81	14.65	9.24	21.97	22.81	32.80	28.79
25	Ix	Intron	0	0.81	1.63	1.06	0.00	0.00	4.00	1.79	0.00	0.71	2.19	0.15	1.56	0.82	7.10	1.17	9.33	4.72	14.99	23.45	13.10	4.33	0.68	1.83	2.72	2.35	5.57	0.93	2.06	4.40
26	Ix_SR1	SilentIntronRegion	0	0.82	1.64	1.06	0.00	0.00	4.02	1.79	0.00	0.71	2.20	0.15	1.57	0.82	7.14	1.17	9.38	4.75	15.07	23.57	13.16	4.35	0.69	1.84	2.73	2.36	5.60	0.93	2.07	4.42
27	E3_Aa	NovelBoundary	0	0.00	0.00	2.24	0.00	0.00	8.98	13.22	0.00	0.00	1.96	0.00	2.71	0.00	16.75	0.00	24.25	15.55	51.63	16.18	40.03	5.50	0.00	9.55	13.70	5.57	13.00	0.00	2.29	6.90
28	ER3a	ExonRegion	0	56.07	18.75	31.22	8.79	29.40	25.05	16.93	44.98	16.40	31.07	10.99	22.23	35.17	34.74	9.83	42.91	46.89	69.57	32.30	59.41	21.39	53.98	43.09	55.04	33.35	32.50	18.53	41.57	47.94
29	E3_Da	NovelBoundary	0	4.60	3.49	1.52	0.00	0.00	1.73	4.86	7.12	3.29	0.00	3.23	6.05	0.00	14.11	0.00	10.25	13.17	41.61	0.00	23.24	4.09	2.48	2.51	2.57	0.00	0.00	4.17	4.40	20.83
30	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E3a_E5a	KnownJunction	1	96.26	21.91	122.08	81.96	186.42	30.35	2.23	43.35	27.07	34.75	14.14	31.57	44.10	54.88	15.95	20.73	50.02	69.99	24.05	78.98	16.89	67.29	57.13	109.22	57.51	25.96	43.93	72.97	55.92
32	I3_AR1	ActiveIntronRegion	0	1.04	0.00	0.00	0.00	0.00	0.00	0.98	1.79	0.55	0.70	1.73	1.15	0.00	2.88	0.00	10.41	3.32	10.08	6.21	1.34	1.39	0.00	0.00	1.66	0.69	0.12	0.00	1.20	1.39
33	I3_AR2	ActiveIntronRegion	0	2.50	1.88	0.00	0.00	0.00	1.07	0.78	0.00	2.84	2.25	0.23	1.56	0.00	2.00	3.74	2.28	5.81	2.25	3.73	1.61	3.05	1.40	0.35	2.93	0.27	2.14	0.36	0.00	0.91
34	I3_AR3	ActiveIntronRegion	0	0.00	1.19	0.62	0.00	0.00	0.51	0.25	0.00	2.05	0.73	0.00	2.65	0.96	2.06	1.70	5.23	8.67	2.10	1.18	2.04	1.60	1.33	0.67	1.53	0.00	1.36	0.00	0.00	0.93
35	I3_SR2	SilentIntronRegion	0	0.68	0.51	0.27	0.00	0.00	1.09	0.21	0.00	2.15	2.21	0.19	1.61	0.41	3.36	2.62	2.66	7.42	1.85	1.52	2.63	1.80	0.57	0.57	2.43	0.45	2.91	0.00	0.00	2.46
36	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.61	0.00	0.00	1.31	0.00	0.00	0.00	0.00	3.99	0.00	0.00	7.27	0.00	0.00	0.00	0.00	0.00	0.00	2.81	3.60	4.38	0.00	0.00	13.21
37	ER4a	ExonRegion	0	0.00	0.00	0.00	4.20	0.00	3.59	0.00	0.02	0.66	0.85	0.00	0.74	2.12	0.62	0.26	0.03	0.23	1.57	0.00	0.00	0.00	0.00	0.00	1.29	0.12	2.84	0.02	1.05	0.03
38	E4_Da	NovelBoundary	0	0.00	0.00	1.20	0.00	0.00	0.00	0.00	2.49	1.19	3.52	0.00	1.87	0.00	2.19	16.34	15.61	2.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.47	0.00	3.83
39	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	12.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	I4	Intron	0	4.63	3.55	2.04	0.67	0.00	6.33	1.14	0.35	10.69	6.10	1.12	8.23	1.70	12.71	7.16	28.50	15.00	31.72	6.30	6.25	10.58	2.88	6.45	4.04	1.48	15.50	18.41	2.45	17.66
41	I4_SR1	SilentIntronRegion	0	4.65	3.56	2.05	0.68	0.00	6.35	1.14	0.35	10.73	6.12	1.12	8.25	1.71	12.75	7.18	28.61	15.06	31.84	6.32	6.28	10.62	2.89	6.48	4.06	1.48	15.56	18.47	2.46	17.73
42	E5_Aa	NovelBoundary	0	5.49	3.68	5.81	9.92	0.00	10.78	0.00	0.00	7.43	7.75	0.00	13.37	0.00	19.01	7.77	39.70	27.73	41.48	0.00	7.94	7.58	0.00	8.86	0.00	0.00	11.76	17.39	2.20	58.50
43	ER5a	ExonRegion	0	77.93	41.10	89.91	38.44	91.01	34.37	18.12	45.11	25.75	47.20	22.23	35.11	55.92	62.94	20.61	78.84	51.73	155.18	26.57	76.90	31.89	61.29	58.28	115.50	65.44	27.12	46.70	38.31	52.60
44	E5_Da	KnownBoundary	0	65.36	32.09	99.76	9.27	62.04	35.53	43.20	33.89	31.31	61.80	33.91	36.23	63.37	66.12	32.89	110.31	58.68	195.60	32.37	83.86	35.86	67.97	73.53	79.20	70.69	32.10	16.80	29.92	63.78
45	ER5b	ExonRegion	0	85.83	39.58	94.20	11.89	71.40	39.45	25.90	48.02	55.50	62.24	36.04	42.87	74.35	75.71	15.73	97.98	72.59	197.55	47.27	79.47	38.07	72.97	69.79	94.48	76.01	57.48	56.33	53.17	92.92
46	E5_Db	KnownBoundary	0	105.47	38.78	57.28	0.00	31.98	42.47	21.46	41.21	28.38	43.74	24.23	29.55	63.15	64.63	0.00	55.39	77.61	206.77	24.28	55.08	21.22	53.43	41.17	69.86	59.06	47.38	59.19	15.50	93.56
47	E5b_E6a	KnownJunction	1	8.38	8.63	16.22	0.00	0.00	16.15	4.69	14.48	19.34	18.14	7.81	9.52	18.44	14.73	0.00	24.10	13.35	33.01	8.09	0.00	9.87	32.96	18.12	25.78	15.99	7.55	13.02	55.63	23.51
48	ER5c	ExonRegion	0	83.83	25.26	51.89	7.31	25.13	31.40	19.08	40.75	24.99	30.64	20.05	25.95	53.46	69.76	6.72	66.81	62.08	143.01	30.47	51.78	36.61	55.24	63.25	86.86	51.74	35.69	52.30	24.34	62.69
49	E5_Dc	KnownBoundary	0	14.10	0.00	1.25	0.00	0.00	3.88	0.00	0.00	4.96	7.47	5.63	0.00	0.00	13.78	7.77	6.81	11.97	9.25	0.00	7.19	13.12	2.48	7.54	6.10	1.93	17.29	6.81	1.89	1.68
50	E5c_E6a	KnownJunction	0	68.48	8.73	47.21	0.00	19.90	30.96	15.79	28.57	15.04	24.89	15.66	25.12	51.91	66.27	7.97	59.44	53.01	126.25	32.15	52.76	71.64	42.01	69.49	105.93	44.82	17.81	78.77	34.51	68.44
51	ER5d	ExonRegion	0	4.36	0.00	2.87	0.00	0.00	1.32	0.93	0.00	1.40	5.91	2.88	2.87	0.05	7.21	0.41	2.74	8.95	7.24	0.00	1.25	7.22	2.06	0.81	5.46	0.39	12.40	6.58	1.35	4.42
52	E5_Dd	NovelBoundary	0	8.79	4.85	2.42	0.00	0.00	1.42	4.63	1.94	4.72	1.64	0.00	12.83	0.00	9.00	0.00	18.97	25.89	4.62	0.00	7.44	21.34	4.62	1.87	0.00	5.42	28.97	2.53	0.00	21.36
53	I5	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	0.00	0.75	0.00	2.04	0.00	3.17	0.00	0.00	0.00	0.00	1.49	0.00	0.00	0.00	0.00	0.00	1.10
54	I5_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	0.77	0.00	2.11	0.00	3.27	0.00	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	1.12
55	E6_Aa	NovelBoundary	0	0.00	7.47	0.00	0.00	0.00	0.00	4.86	2.44	1.55	6.71	1.33	0.00	0.00	2.81	0.00	7.04	6.64	9.25	0.00	3.64	12.76	0.00	2.51	2.27	1.78	9.48	4.47	0.00	6.44
56	ER6a	ExonRegion	0	60.62	32.25	64.74	12.23	37.66	22.98	17.06	32.47	34.97	43.13	12.25	23.25	51.89	51.70	25.18	66.85	60.31	153.50	37.29	55.51	27.23	56.54	57.93	64.58	34.81	46.55	42.87	41.79	79.70
57	IG45	Intergenic	0	9.15	3.80	4.95	0.99	2.35	4.35	3.05	1.52	4.94	10.23	1.47	13.48	0.54	14.14	5.25	5.83	36.06	15.89	10.77	10.41	10.31	3.47	1.99	4.44	2.95	37.21	11.85	3.37	11.05
58	IG45_SR1	SilentIntergenicRegion	0	9.89	3.91	3.75	1.39	0.54	4.57	3.57	2.09	4.91	9.54	1.76	14.82	0.48	13.04	6.09	5.94	36.89	16.00	8.06	11.08	9.83	3.95	1.40	4.47	2.85	34.41	11.29	3.50	9.73
59	IG45_AR1	ActiveIntergenicRegion	0	7.99	3.65	6.98	0.32	5.40	4.02	2.21	0.58	5.03	11.47	1.01	11.35	0.63	16.09	3.88	5.69	34.94	15.82	15.37	9.36	11.17	2.71	3.00	4.42	3.14	42.12	12.87	3.16	13.34