Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HLA-DRA	Gene	0	48172.19	28033.94	29455.76	5591.15	31070.00	34876.53	98583.94	109295.78	57951.98	35226.23	33445.57	20889.48	15705.76	28691.01	8654.41	38686.32	46639.78	31744.52	18205.63	85116.40	24109.01	59735.15	37411.40	32354.92	78283.22	7780.36	36937.55	21630.44	61421.75
2	395388	Transcript	0	34.37	16.08	9.17	8.57	217.99	78.07	77.02	109.32	25.18	21.96	44.03	7.17	21.55	9.20	4.44	13.26	7.91	14.49	21.69	10.95	8.41	46.56	35.42	14.39	24.15	5.15	21.79	27.77	7.87
3	416844	Transcript	0	2.24	0.00	1.89	0.00	0.00	2.76	20.94	23.04	10.29	0.00	14.96	28.07	7.74	2.42	0.00	3.29	15.67	0.00	16.18	19.02	7.50	19.64	11.43	29.25	12.65	8.58	39.66	12.94	22.48
4	462200	Transcript	0	2.18	3.49	0.00	0.00	0.00	0.00	2.12	6.22	2.68	0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.10	0.00	0.00	7.19	1.48	0.00	6.16	2.75	9.47	1.59	1.84	1.66	0.00
5	374982	Transcript	1	51.91	248.77	0.00	0.00	480.87	0.00	0.00	0.00	144.41	0.00	0.00	0.00	0.00	44.20	0.00	0.00	50.13	0.00	0.00	144.56	0.00	370.51	198.53	0.00	0.00	0.00	127.77	18.38	0.00
6	ER1a	ExonRegion	0	34.37	16.08	9.17	8.57	217.99	78.07	77.02	109.32	25.18	21.96	44.03	7.17	21.55	9.20	4.44	13.26	7.91	14.49	21.69	10.95	8.41	46.56	35.42	14.39	24.15	5.15	21.79	27.77	7.87
7	ER1b	ExonRegion	0	112.53	41.06	20.76	29.25	523.06	173.21	177.39	278.92	66.29	56.31	107.70	21.03	52.61	19.50	11.20	22.78	18.53	28.66	61.10	28.11	19.26	126.19	95.84	34.42	61.46	15.72	48.54	58.68	23.49
8	ER1c	ExonRegion	0	27738.50	9935.96	13729.44	5720.47	41473.30	27515.19	63134.10	42731.48	15303.29	22184.92	19486.51	7807.62	5026.66	10225.90	2621.84	32042.29	18501.11	19460.97	11258.00	40542.06	20440.57	32467.65	26919.29	11979.28	41005.68	3613.21	24295.15	6773.47	23998.02
9	E1_Ad	KnownBoundary	0	94535.15	28994.97	32704.18	18552.33	138644.38	92448.87	219660.39	142181.13	50599.45	74430.70	56292.65	21616.59	13646.55	29213.26	9044.53	111394.96	51646.51	41911.41	3508.31	132385.64	69729.84	104840.66	90657.30	37502.51	126790.25	10706.74	72670.47	20665.87	67914.31
10	ER1d	ExonRegion	0	38328.04	20175.63	52763.50	13047.94	83428.56	43635.41	98328.38	72831.13	31841.96	37434.80	43698.08	20798.73	13678.65	26335.45	4971.53	46525.34	45732.15	26402.76	15283.01	71207.44	29593.10	45494.70	40891.06	26331.51	81638.53	8006.41	54110.72	23571.69	69879.55
11	E1_Da	NovelBoundary	0	34.68	4.85	0.00	0.00	25.94	8.90	2.92	6.72	5.82	7.51	14.17	4.46	0.00	8.73	0.00	0.00	5.09	4.62	8.09	18.19	0.00	7.10	5.02	7.84	12.46	0.00	0.00	0.00	0.00
12	E1a_E2a	KnownJunction	0	19980.26	4768.02	4247.29	3598.39	15234.96	6335.75	26450.17	39364.86	12927.06	6943.90	4936.64	4603.62	3636.05	9742.75	2198.30	5154.10	7298.32	9982.50	3220.13	27260.95	3498.59	37136.33	6693.72	13105.81	13832.26	1503.41	5881.05	3760.09	12662.62
13	E1a_E2b	KnownJunction	0	2.18	3.49	0.00	0.00	0.00	0.00	2.12	6.22	2.68	0.00	0.00	1.87	0.00	0.00	0.00	0.00	1.10	0.00	0.00	7.19	1.48	0.00	6.16	2.75	9.47	1.59	1.84	1.66	0.00
14	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	8.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	I1	Intron	0	61.41	37.86	14.46	1.54	17.31	44.34	25.67	30.31	29.93	47.34	27.84	18.72	2.87	64.07	4.42	113.95	126.68	109.02	67.78	64.77	40.67	11.52	10.34	29.78	63.55	2.24	9.25	25.00	15.00
16	I1_SR1	SilentIntronRegion	0	21.49	26.96	12.30	0.00	18.30	24.15	17.58	15.64	17.22	22.31	12.85	6.85	2.55	21.97	0.73	71.69	67.99	70.00	56.48	31.76	21.46	3.69	7.43	10.80	33.60	3.71	7.59	19.45	10.41
17	I1_AR1	ActiveIntronRegion	0	5.22	4.31	7.60	0.00	11.42	13.75	5.59	1.96	6.37	10.50	3.07	5.49	0.65	17.06	0.00	50.09	39.13	41.62	9.15	28.17	20.36	0.00	1.70	7.13	10.12	0.00	1.34	2.07	9.87
18	I1_AR2	ActiveIntronRegion	0	56.96	38.18	11.11	4.11	14.02	58.16	35.94	18.43	33.97	53.56	37.60	20.34	1.47	62.12	2.90	126.93	138.08	110.63	69.85	74.41	49.22	8.77	8.93	25.13	63.13	1.44	9.49	20.26	11.79
19	I1_SR2	SilentIntronRegion	1	64.32	35.78	11.58	0.81	12.12	44.48	22.47	30.09	29.75	48.30	27.96	19.79	2.74	66.33	4.87	112.93	104.96	110.19	59.44	65.66	40.06	11.07	10.11	29.14	55.89	1.54	8.37	21.96	12.15
20	I1_AR3	ActiveIntronRegion	0	101.95	55.70	26.56	1.94	31.22	51.61	31.43	59.26	40.36	65.68	33.95	26.94	5.11	104.13	8.82	148.19	221.70	147.95	100.30	86.71	52.62	23.53	15.94	55.24	112.56	3.51	13.28	43.84	28.76
21	E2_Aa	NovelBoundary	0	91.13	31.22	29.50	10.78	7.07	43.74	18.48	59.57	45.92	76.30	21.95	19.73	6.94	84.04	0.00	109.47	147.53	104.03	56.65	63.60	44.96	23.09	10.79	43.96	78.35	3.91	0.00	34.87	21.43
22	ER2a	ExonRegion	0	63196.42	29944.82	6351.55	1830.25	6248.59	63605.14	159088.02	131065.34	53199.50	56857.96	52731.88	24031.35	17877.23	36819.06	8095.60	66853.52	49190.76	45946.56	26446.23	123167.42	40596.91	68774.98	54703.30	41394.35	118744.92	10507.05	35674.49	21600.00	81072.02
23	E2_Ab	KnownBoundary	0	52168.79	18818.47	10427.24	1812.68	6413.90	44281.71	144226.98	121868.79	59038.05	46588.32	54187.30	32623.01	20474.99	35418.08	8334.35	43612.70	70821.10	44769.49	16122.67	86642.00	24005.22	46933.74	77180.67	25780.71	59941.80	13336.99	95710.03	37863.08	105251.55
24	ER2b	ExonRegion	0	57828.92	20455.47	53596.24	5048.82	48486.22	29205.04	93670.45	140358.14	46850.32	31893.67	29114.55	23540.55	14267.58	34095.72	6666.61	33237.17	53660.81	32260.35	13959.73	102881.00	18910.32	62760.20	39552.70	33196.46	77260.59	7820.12	49216.68	24927.82	59350.37
25	E2_Da	NovelBoundary	0	67.54	12.99	12.01	0.00	20.78	32.19	20.94	19.96	15.56	15.30	1.61	9.61	3.47	48.06	0.00	77.49	112.16	47.52	40.46	44.99	19.61	11.47	4.88	13.88	43.26	5.66	23.76	7.73	15.85
26	E2a_E3a	KnownJunction	0	55532.20	26046.12	73445.71	8548.31	41537.23	35072.61	113836.14	118733.19	62217.14	38367.72	26760.41	22973.92	14008.97	33856.93	8382.78	40304.28	48138.40	36822.87	16519.20	94973.94	24419.36	62777.06	34584.07	32265.55	88270.07	7139.41	20407.23	17497.13	55867.15
27	E2a_E3b	KnownJunction	1	51.91	248.77	0.00	0.00	480.87	0.00	0.00	0.00	144.41	0.00	0.00	0.00	0.00	44.20	0.00	0.00	50.13	0.00	0.00	144.56	0.00	370.51	198.53	0.00	0.00	0.00	127.77	18.38	0.00
28	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	3.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	I2	Intron	0	68.06	22.90	8.36	0.00	14.65	26.46	26.20	24.85	26.62	32.85	17.85	12.95	1.29	44.68	2.31	65.87	98.15	64.70	27.15	31.03	29.24	9.46	6.78	31.19	55.39	3.54	14.19	15.49	22.91
30	I2_AR1	ActiveIntronRegion	0	68.72	23.12	8.44	0.00	14.80	26.72	26.46	25.09	26.89	33.16	18.03	13.07	1.31	45.12	2.33	66.51	99.08	65.32	27.42	31.33	29.53	9.56	6.85	31.50	55.92	3.57	14.33	15.64	23.14
31	Ix	Intron	0	46.48	10.92	1.34	0.00	7.84	14.35	21.05	16.27	15.54	20.29	11.47	11.89	0.52	28.15	1.85	61.81	73.13	50.29	23.09	29.26	16.04	5.07	5.08	28.51	50.51	1.26	11.03	15.06	17.73
32	Ix_AR1	ActiveIntronRegion	0	47.23	11.09	1.36	0.00	7.97	14.58	21.38	16.53	15.77	20.58	11.65	12.08	0.53	28.58	1.88	62.78	74.30	51.00	23.46	29.73	16.27	5.15	5.16	28.93	51.30	1.28	11.21	15.28	18.01
33	I2	Intron	0	27.35	9.33	0.00	0.00	2.83	10.36	10.51	7.47	6.83	10.04	2.07	8.57	1.12	16.53	0.00	44.00	32.87	30.52	7.41	24.21	12.40	4.18	4.19	14.96	17.40	1.82	0.00	5.67	3.49
34	I2_AR1	ActiveIntronRegion	0	27.94	9.47	0.00	0.00	2.90	10.60	10.76	7.64	6.95	10.27	2.12	8.74	1.15	16.90	0.00	44.96	33.59	31.23	7.58	24.74	12.67	4.26	4.29	15.31	17.80	1.85	0.00	5.80	3.57
35	E3_Aa	NovelBoundary	0	42.76	35.39	19.23	0.00	0.00	29.16	37.25	45.04	43.73	44.50	16.42	15.60	0.00	58.29	0.00	100.14	189.96	42.51	8.09	30.68	28.72	13.56	8.91	53.95	54.63	3.95	2.24	5.98	26.31
36	ER3a	ExonRegion	0	68044.43	26310.60	68845.77	14047.61	64157.35	38461.34	117753.90	152677.68	63610.07	41759.22	29885.81	25057.00	15979.46	39100.87	8237.21	42071.03	50975.43	37463.50	16910.59	107332.22	26426.86	76290.69	39408.11	35576.66	99104.63	8472.41	23866.15	19114.59	63203.29
37	ER3b	ExonRegion	0	74238.65	27618.83	44104.04	16946.32	79503.45	47035.78	138538.90	183928.84	70854.04	43934.37	28740.94	27453.88	18415.56	42105.49	9375.16	46001.42	57254.91	41485.87	17226.38	114946.55	29107.39	87823.69	48244.03	36756.58	93795.74	10583.26	26679.83	23701.21	70623.91
38	E3_Ab	KnownBoundary	0	67566.41	28255.04	23602.86	16090.85	85612.19	47655.99	159343.07	162071.01	67159.68	44813.30	28045.16	25263.63	16270.14	37924.21	10989.29	47723.44	53139.89	5525.07	24.28	110666.19	27903.31	82795.62	51964.82	36458.79	90850.88	11290.11	31955.94	27133.76	62176.59
39	ER3c	ExonRegion	0	64346.80	25976.21	33018.46	7762.17	30319.69	30204.76	111589.56	146470.83	56282.31	36013.19	30885.24	27615.29	16842.90	36585.83	9567.23	43637.66	57993.51	41157.53	17689.44	100855.95	20878.98	80465.81	43575.09	33516.24	89023.26	8801.39	32616.20	23939.73	61048.83
40	E3_Db	KnownBoundary	0	76458.59	30828.30	50876.34	5508.99	25894.63	41505.51	148805.25	176106.09	83263.81	51230.00	34664.12	33453.27	20688.77	39574.24	13534.80	53143.99	72792.87	50860.94	22000.49	106367.41	29930.48	95866.44	50922.75	39368.10	107251.23	11464.13	29631.59	28914.44	81117.39
41	E3b_E5b	KnownJunction	0	2.24	0.00	1.89	0.00	0.00	2.76	20.94	23.04	10.29	0.00	14.96	28.07	7.74	2.42	0.00	3.29	15.67	0.00	16.18	19.02	7.50	19.64	11.43	29.25	12.65	8.58	39.66	12.94	22.48
42	ER3d	ExonRegion	0	62998.18	27189.19	36265.70	4197.34	23839.67	28997.39	108834.36	143429.06	51821.57	37050.86	32647.72	28807.45	16859.29	34698.84	10004.17	43431.87	60219.18	40947.50	19516.69	100176.03	20288.92	78963.49	43837.02	35913.91	89640.65	9606.09	33039.16	26024.14	65708.90
43	E3_Dc	NovelBoundary	0	86.30	21.43	26.73	0.00	7.07	30.73	19.05	30.26	59.75	46.22	19.71	21.11	1.59	79.32	9.17	124.46	234.50	55.35	56.65	91.63	33.85	17.60	13.00	82.90	65.24	0.00	65.60	29.88	35.89
44	E3c_E4a	KnownJunction	0	53061.66	25185.98	28774.75	3867.79	22098.35	23720.37	101296.49	125760.28	46839.09	33648.23	32471.94	25965.61	15046.46	29200.85	10709.04	42572.47	58876.13	40088.72	22213.15	82146.39	17350.35	65720.88	40736.63	30688.03	73463.59	8481.04	44974.45	29325.16	62635.45
45	I3	Intron	0	62.03	81.22	10.92	2.53	18.96	51.92	53.71	29.57	103.31	54.77	17.01	18.06	2.51	59.90	3.41	156.98	207.85	81.54	72.73	99.04	51.10	8.27	4.79	103.26	85.00	9.98	21.31	23.59	42.33
46	I3_AR1	ActiveIntronRegion	0	62.46	81.79	10.99	2.55	19.09	52.28	54.08	29.77	104.03	55.16	17.13	18.18	2.53	60.31	3.43	158.08	209.28	82.08	73.22	99.73	51.45	8.33	4.82	103.97	85.59	10.05	21.46	23.75	42.62
47	E4_Aa	NovelBoundary	0	68.07	56.91	20.78	0.00	39.94	20.14	22.71	16.67	29.08	31.60	18.38	17.26	5.38	65.92	0.00	172.66	191.96	27.87	0.00	40.03	11.11	20.57	13.59	105.28	55.69	12.62	32.35	24.89	34.04
48	ER4a	ExonRegion	0	59482.29	32649.00	35109.74	4533.85	22068.59	28884.19	105894.21	145302.85	75564.29	36591.43	33384.61	26376.05	21989.55	31221.37	12544.43	42006.88	59673.80	39853.59	19941.73	98459.27	21508.93	83607.04	45522.08	37559.10	91172.98	10233.03	45936.88	31441.73	78604.24
49	E4_Da	NovelBoundary	0	48.37	39.85	3.34	0.00	0.00	20.45	23.23	32.55	34.56	26.64	14.62	9.85	7.16	65.43	19.73	120.18	190.74	61.52	24.28	44.57	11.55	12.69	1.87	49.41	44.82	1.76	4.32	3.95	22.48
50	E4a_E5a	KnownJunction	0	48519.31	30737.46	36247.73	4151.86	16003.21	27071.01	78722.68	137555.24	58915.06	31730.61	36080.37	24563.37	17429.15	29195.78	14730.71	38884.62	50754.02	37518.84	24364.39	75393.84	17889.31	62943.62	35608.61	30918.20	61870.57	7587.78	46952.95	20618.74	67037.20
51	I4	Intron	0	55.16	34.37	10.72	2.22	14.34	34.95	44.86	16.36	31.88	34.48	8.46	11.96	3.85	57.35	8.16	103.23	162.87	45.80	26.17	54.54	39.24	10.45	8.94	69.48	43.73	2.91	11.89	8.82	25.20
52	I4_SR1	SilentIntronRegion	0	49.51	14.72	7.94	0.00	0.00	13.99	33.38	25.22	26.43	27.06	9.52	2.30	0.00	34.40	3.25	84.32	99.87	51.36	22.63	45.03	20.28	4.62	4.74	43.84	59.72	9.46	12.16	5.84	19.46
53	I4_AR1	ActiveIntronRegion	0	83.60	42.16	14.77	0.00	0.00	37.80	50.73	42.96	48.69	39.70	15.07	10.10	0.00	67.58	5.60	137.50	180.48	66.41	27.15	73.08	38.75	16.22	7.23	93.57	89.33	11.00	25.64	15.49	36.24
54	I4_SR2	SilentIntronRegion	0	55.88	36.28	11.02	2.45	15.83	37.02	46.20	15.51	32.47	35.37	8.39	12.91	4.25	59.73	8.68	105.44	169.55	45.58	26.72	55.67	41.21	10.98	9.40	72.07	42.36	2.32	11.85	9.09	25.81
55	E5_Aa	NovelBoundary	0	42.06	41.11	1.47	0.00	34.48	56.90	60.65	17.22	48.78	53.57	17.75	13.55	3.15	97.71	27.90	151.70	238.08	79.50	40.46	80.22	39.03	15.27	15.81	88.83	49.02	2.19	11.18	8.85	45.69
56	ER5a	ExonRegion	0	47936.59	44689.21	29722.08	4503.49	24606.10	37845.11	103777.35	119704.55	99267.48	39225.82	38568.34	22394.96	22356.60	31885.24	12335.06	38634.95	57057.63	30594.43	22442.41	85497.94	27777.07	65611.64	38491.16	39269.52	83149.90	8188.00	44730.09	26039.87	78252.57
57	E5_Ab	KnownBoundary	0	33612.74	44243.43	21803.78	1896.37	8110.73	37861.55	98221.60	81552.90	115577.54	37141.51	39870.38	18419.45	17630.34	30639.30	14409.01	37317.93	52187.99	31319.25	34111.99	72271.04	26875.08	34045.73	23427.39	36659.89	57528.81	6235.86	29508.59	13665.19	70157.94
58	ER5b	ExonRegion	0	18110.86	28073.34	9614.06	3023.28	12581.75	27642.98	54530.96	31881.11	50847.90	22875.50	27017.01	8777.56	8468.70	14962.49	7372.43	18378.88	20208.28	15766.14	16829.56	47861.07	20118.97	22509.52	15091.33	26007.37	42767.91	3539.78	25433.24	10211.45	31303.63
59	ER5c	ExonRegion	0	1137.61	4256.80	2482.40	1503.97	6730.74	2815.15	4457.76	837.81	5654.60	2660.87	2848.80	964.94	700.34	1310.56	1354.23	1660.33	2152.70	3083.96	3712.39	7689.25	2404.22	657.64	1721.10	5230.59	6835.16	630.12	4590.43	1616.56	2127.97
60	IG34_AR1	ActiveIntergenicRegion	0	1.02	7.11	3.02	0.00	5.30	4.54	10.34	12.12	4.16	7.30	10.66	3.32	0.00	5.24	1.99	16.89	11.10	3.48	3.47	21.33	8.25	4.28	4.90	13.52	9.34	0.57	15.07	11.38	22.23