Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C6orf129	Gene	0	1287.54	188.71	356.37	1406.02	1380.97	348.52	1217.08	1007.03	448.00	258.73	216.88	407.66	665.00	301.09	1671.49	774.50	485.36	177.20	582.45	593.13	383.29	1361.97	1062.88	258.28	373.53	1245.05	1118.36	1802.44	717.26
2	373405	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00	0.00	0.00	0.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
3	411755	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	373408	Transcript	1	2052.16	313.35	23.35	227.74	78.05	558.16	1205.96	1587.02	671.06	257.05	123.62	205.56	518.62	370.22	1824.67	1214.36	197.19	231.34	798.60	951.27	639.53	2199.07	549.50	410.84	532.46	472.97	87.92	257.02	312.83
5	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.00	0.00	0.00	0.00	0.00	0.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
6	ER1b	ExonRegion	0	1370.99	249.88	594.62	3082.36	3455.30	514.05	1748.18	1021.36	480.57	417.09	383.76	546.60	673.21	288.48	2209.55	729.76	534.02	288.75	977.31	601.40	597.83	1415.15	1735.53	236.80	497.01	1495.25	2341.40	2614.89	808.87
7	E1_Da	NovelBoundary	0	0.00	4.85	0.00	0.00	0.00	1.88	0.00	0.00	3.26	0.00	0.00	0.00	0.00	0.00	9.17	0.00	1.40	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00
8	E1a_E2a	KnownJunction	1	2503.58	405.25	1600.68	5410.85	4275.54	1057.03	3082.50	1912.35	1534.71	710.27	621.65	1296.06	2010.88	723.68	5034.02	1141.82	1879.23	419.84	1618.04	1092.37	1449.23	2773.23	4766.58	520.87	1033.24	5826.11	4934.56	8259.21	2979.01
9	E1a_E3a	NovelJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	2.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	I1_AR1	ActiveIntronRegion	0	0.68	0.67	0.35	0.00	1.01	0.54	0.00	0.00	2.63	0.56	0.60	0.00	0.27	1.54	2.67	0.00	1.43	0.00	1.99	0.29	1.33	0.56	0.19	0.22	0.20	1.47	1.49	0.51	0.00
11	E2_Aa	NovelBoundary	0	0.00	0.00	2.74	0.00	0.00	1.65	0.00	0.00	3.41	1.60	0.00	0.00	0.00	5.89	25.51	14.61	2.72	0.00	0.00	0.00	1.56	4.72	0.00	0.00	0.00	2.19	0.00	0.00	3.50
12	ER2a	ExonRegion	0	987.10	135.41	498.42	1101.44	835.64	298.87	1215.18	842.25	516.59	191.84	179.31	543.63	1035.86	294.28	1292.97	782.55	783.00	81.47	359.40	366.90	352.06	1062.10	1141.24	179.56	305.61	1994.89	1001.62	2663.55	1260.68
13	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E2a_E3a	KnownJunction	0	1850.31	157.54	12.18	265.95	62.34	195.64	269.48	1394.89	266.28	48.01	54.79	104.55	406.84	234.33	791.30	757.34	88.21	47.78	129.25	535.56	177.65	2176.94	166.27	324.32	226.40	220.32	33.45	125.45	180.29
15	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	18.13	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	3.28	8.37	0.00	2.63	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	4.58	0.00
17	ER3a	ExonRegion	1	3064.64	387.93	29.91	265.19	87.88	626.10	1440.08	2201.48	764.93	284.50	154.38	250.15	658.80	513.44	1859.51	1444.62	246.05	284.25	783.31	1352.57	708.00	3499.32	656.88	573.02	633.46	521.22	104.19	309.46	377.05
18	E3_Da	NovelBoundary	0	8.61	4.17	0.00	0.00	0.00	1.92	0.00	0.00	0.00	3.67	0.00	1.14	0.00	2.26	0.00	36.80	5.20	9.25	0.00	2.98	12.67	4.42	0.00	0.00	5.23	2.02	0.00	1.71	0.00
19	E3a_E4a	KnownJunction	1	3293.69	707.93	51.30	379.83	161.96	1410.89	3114.26	2748.02	1653.05	695.69	285.31	466.29	1008.83	732.52	4644.15	2655.50	454.51	593.35	2281.85	1916.97	1672.48	3120.02	1374.85	746.02	1269.04	1150.36	214.05	592.65	693.98
20	I3	Intron	0	6.08	2.90	0.75	6.69	1.01	3.18	2.72	1.08	3.43	2.85	1.15	2.13	1.39	6.87	9.60	15.98	11.61	2.29	3.20	2.11	3.35	0.93	1.13	3.79	2.22	1.74	0.38	2.82	1.90
21	I3_AR1	ActiveIntronRegion	0	2.08	0.00	0.54	1.16	1.58	2.44	0.33	1.19	2.92	0.29	1.16	0.53	0.65	3.64	4.62	12.64	4.43	1.25	1.55	0.77	2.30	0.58	0.59	3.13	1.85	2.03	0.02	2.38	0.00
22	I3_SR1	SilentIntronRegion	0	0.00	0.00	0.79	2.74	0.00	0.00	0.00	0.87	1.12	2.13	2.02	1.64	1.30	3.99	1.40	8.67	5.06	1.02	0.00	0.00	1.14	0.00	0.99	2.20	0.00	0.00	1.83	0.94	0.00
23	I3_AR2	ActiveIntronRegion	0	3.35	0.00	0.30	3.45	0.00	1.23	0.00	1.46	0.90	0.56	0.56	1.06	0.94	3.35	4.73	5.22	6.16	0.32	0.91	1.78	2.39	0.51	0.45	2.49	0.40	0.00	0.19	0.25	0.00
24	I3_AR3	ActiveIntronRegion	0	7.18	1.80	1.50	2.49	0.00	5.39	4.52	3.44	2.77	4.09	1.45	1.90	1.83	9.82	3.63	17.72	13.63	0.63	1.79	5.90	6.30	0.00	1.69	5.41	3.64	0.59	0.76	1.63	0.32
25	I3_AR4	ActiveIntronRegion	0	6.29	2.31	1.41	5.20	3.93	4.57	4.77	0.89	3.35	2.91	1.99	1.97	0.44	9.25	7.18	11.83	10.04	2.92	3.44	5.23	4.47	0.46	0.19	4.79	3.93	0.19	0.00	2.94	2.23
26	I3_SR2	SilentIntronRegion	0	7.67	4.31	0.00	13.83	1.14	6.20	3.28	0.00	5.08	4.58	0.00	2.36	0.77	12.82	11.77	21.11	12.81	4.75	2.94	3.34	5.93	1.27	1.63	2.72	3.25	1.21	0.00	4.39	2.20
27	I3_AR5	ActiveIntronRegion	0	9.07	5.73	0.96	10.27	0.47	2.82	4.26	0.88	4.39	4.38	1.36	3.52	2.35	7.20	15.81	21.36	17.90	3.02	5.49	1.32	2.77	1.55	1.69	4.52	2.18	3.06	0.70	3.79	3.89
28	E4_Aa	NovelBoundary	0	3.01	13.38	1.54	0.00	0.00	3.68	2.69	0.00	3.11	0.00	0.00	7.89	1.24	6.25	24.72	21.19	17.02	4.62	0.00	0.00	0.00	0.00	0.00	11.60	0.00	6.57	0.00	0.00	1.45
29	ER4a	ExonRegion	0	1702.24	239.57	495.91	1605.32	1785.85	449.51	1742.76	1416.19	622.29	368.94	314.72	599.01	970.70	422.43	2432.96	1093.07	729.00	241.62	804.89	811.16	474.65	1714.47	1577.75	378.57	517.30	1888.98	1703.79	2785.24	1058.37
30	E4_Da	KnownBoundary	0	965.95	156.48	592.45	3247.89	2820.54	165.36	419.21	786.95	177.72	101.26	104.11	115.87	228.13	256.22	1451.05	566.70	117.50	155.79	291.10	572.53	154.18	1407.96	203.94	254.51	226.82	231.87	83.04	184.35	138.62
31	ER4b	ExonRegion	0	353.74	59.64	69.41	722.96	382.16	69.75	197.27	223.49	80.04	61.90	40.58	66.62	82.27	100.98	598.06	203.74	68.73	54.50	143.90	218.30	61.54	410.12	122.39	72.05	83.97	118.95	64.27	107.48	48.24
32	ER4c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.68	0.00	0.00	0.00	1.24	0.00	0.60	3.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.54	0.00
33	IG2	Intergenic	0	2.38	0.00	0.93	0.00	0.00	0.76	0.00	0.00	0.62	0.00	0.00	0.00	0.72	0.50	0.00	1.38	0.00	0.00	0.00	0.00	0.79	0.00	2.00	2.38	1.58	0.00	0.00	1.81	0.74
34	IG2_SR1	SilentIntergenicRegion	0	2.11	0.00	1.00	0.00	0.00	1.04	0.00	0.00	0.52	0.00	0.00	0.00	0.64	0.66	0.00	1.01	0.00	0.00	0.00	0.00	0.94	0.00	1.78	2.71	1.78	0.00	0.00	2.51	1.05
35	IG2_AR1	ActiveIntergenicRegion	0	3.26	0.00	0.81	0.00	0.00	0.11	0.00	0.00	0.94	0.00	0.00	0.00	0.99	0.15	0.00	2.43	0.00	0.00	0.00	0.00	0.46	0.00	2.75	1.72	1.20	0.00	0.00	0.13	0.00