Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	HLA-DRB5	Gene	0	880.28	8861.05	1289.19	427.74	2597.73	477.91	5431.21	3110.60	1859.59	13233.62	1021.39	2278.13	403.19	1265.87	117.00	1253.05	1553.32	1678.92	2742.52	1065.77	1484.66	1193.58	7756.39	1750.74	2469.36	552.75	973.29	5672.80	3653.32
2	374975	Transcript	0	1239.39	9681.70	966.25	278.00	1733.06	1053.75	5955.59	2004.80	1302.71	13650.66	601.20	1617.68	548.34	1402.27	79.26	1895.19	1961.47	944.61	3000.84	1297.40	1123.54	1149.16	7667.92	2484.26	3200.13	808.03	591.38	5846.18	3240.00
3	IG36_SR1	SilentIntergenicRegion	0	0.00	10.60	0.00	0.00	0.00	0.00	2.54	0.00	0.00	12.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	15.48	0.00	0.00	0.00	7.58	0.00	0.00	0.00	0.00	19.30	0.00
4	IG36_AR1	ActiveIntergenicRegion	0	0.00	13.80	0.00	0.00	0.00	0.00	3.63	0.00	0.00	9.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	14.22	0.00	0.00	0.00	6.10	0.00	0.00	0.00	0.00	25.43	0.00
5	ER1a	ExonRegion	1	406.50	5410.35	2716.06	1501.83	10999.26	174.95	2448.12	4074.25	3925.88	7626.89	1454.05	3658.25	260.41	1454.79	308.62	192.54	169.13	2020.04	1817.75	1062.74	1240.61	4786.30	5909.83	437.04	1177.12	155.31	2273.82	4790.41	1444.42
6	E1_Da	NovelBoundary	0	13.86	0.00	0.00	0.00	14.15	3.64	0.00	4.48	21.38	8.15	0.00	3.04	0.00	38.15	0.00	6.04	20.21	5.27	0.00	49.54	1.68	12.11	0.00	5.38	1.59	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	1325.40	2468.65	1099.94	100.51	378.45	496.63	1452.51	2249.02	1181.10	2194.65	220.02	1847.23	360.89	654.84	41.06	334.15	1165.71	60.62	63.84	1463.86	638.04	3668.08	1492.22	1988.21	1135.72	234.83	245.65	974.25	2717.47
8	E1a_E3a	NovelJunction	0	3.01	0.00	2.94	0.00	0.00	0.00	0.00	0.00	3.59	0.00	0.00	0.00	0.00	0.84	0.00	0.00	1.28	0.00	0.00	3.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1	Intron	0	3.13	6.64	1.80	0.00	0.54	2.76	2.22	1.12	6.25	10.08	1.57	3.25	0.21	16.03	0.14	4.73	21.79	11.70	8.22	3.54	6.63	0.94	1.07	1.33	2.99	0.24	0.76	2.40	1.69
10	I1_AR1	ActiveIntronRegion	0	18.90	5.69	0.00	0.00	0.00	13.73	12.22	0.47	4.23	11.87	1.50	0.42	1.78	6.99	0.00	25.92	28.76	9.27	4.03	19.00	17.99	1.17	0.00	9.06	10.92	1.99	0.00	2.90	11.97
11	I1_AR2	ActiveIntronRegion	0	21.67	8.88	3.80	0.00	0.00	12.24	5.15	1.53	19.54	14.01	2.25	5.06	1.44	13.59	0.00	20.29	33.97	34.22	4.27	18.74	22.56	2.50	0.07	10.24	8.84	0.44	0.00	0.75	9.27
12	I1_AR3	ActiveIntronRegion	0	30.20	5.57	8.67	0.00	8.76	27.45	14.11	28.29	212.86	24.15	11.40	30.06	4.41	104.28	4.58	29.83	74.83	110.41	9.19	28.02	86.71	6.66	4.22	15.19	22.52	4.71	2.89	10.08	10.66
13	I1_SR1	SilentIntronRegion	0	1.63	6.67	1.80	0.00	0.50	1.72	1.47	0.88	4.11	9.77	1.47	3.12	0.06	15.75	0.11	2.98	20.67	10.53	8.53	2.14	4.92	0.85	1.12	0.60	2.24	0.09	0.79	2.32	0.88
14	E2_Aa	NovelBoundary	0	2.30	0.00	23.05	0.00	0.00	4.49	0.00	0.00	0.00	7.19	0.00	6.33	2.42	6.27	0.00	11.86	29.94	0.00	0.00	6.45	0.00	0.00	0.00	4.67	20.50	0.00	0.00	0.00	0.00
15	ER2a	ExonRegion	0	1553.13	6798.65	459.57	465.65	4490.68	410.08	3903.67	2490.31	1505.69	11728.46	2190.54	2129.77	518.99	1482.39	152.44	1996.39	2396.98	3298.14	2358.39	2224.58	1700.24	789.23	6729.08	3093.83	3891.65	907.45	1763.72	4688.28	3962.13
16	E2_Da	NovelBoundary	1	36.04	36.26	18.24	7.98	11.49	0.00	15.68	1.84	12.97	52.81	2.63	10.51	0.00	28.71	0.00	34.42	153.85	9.12	15.96	15.30	11.87	12.83	20.78	57.72	114.22	28.97	0.00	32.58	13.50
17	E2a_E3a	KnownJunction	0	6731.24	6636.06	93.46	10.78	0.00	7535.09	9552.07	27.57	58.86	11144.14	45.36	796.04	2995.12	6570.30	0.00	12319.21	10497.60	4.62	2073.24	5925.06	2587.08	4.62	5780.63	14347.22	18141.06	5077.43	21.37	4406.65	9564.44
18	E2a_E4a	NovelJunction	1	0.00	30.25	0.00	0.00	0.00	0.00	5.44	0.00	0.00	18.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	77.82	0.00
19	I2	Intron	0	1.69	37.17	0.77	0.00	0.66	0.26	8.50	2.26	7.91	47.00	2.69	1.44	0.00	3.05	0.97	2.21	11.09	34.37	19.56	4.04	2.33	3.14	3.79	0.06	0.74	0.00	3.74	6.74	0.44
20	I2_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	12.67	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	I2_SR1	SilentIntronRegion	0	1.72	37.74	0.79	0.00	0.67	0.27	8.63	2.29	8.03	47.71	2.73	1.46	0.00	3.10	0.99	2.24	11.26	34.89	19.69	4.10	2.36	3.19	3.85	0.06	0.75	0.00	3.80	6.85	0.44
22	E3_Aa	NovelBoundary	0	57.63	66.80	0.00	0.00	0.00	7.21	14.88	0.00	0.00	85.36	0.00	0.00	1.75	29.78	0.00	73.36	132.20	0.00	16.18	0.00	0.00	0.00	9.36	54.13	45.65	0.00	0.00	7.68	1.58
23	ER3a	ExonRegion	0	2125.75	9761.62	2861.36	533.90	608.28	1503.84	6644.12	8244.18	3608.50	15171.88	1353.78	5073.09	1038.97	3164.39	137.69	3272.31	4069.77	2409.61	2794.54	1855.74	3492.96	1575.83	8979.38	4464.73	6116.43	1403.01	1213.64	6248.18	9495.43
24	E3a_E4a	KnownJunction	0	33.62	14401.31	68.84	0.00	0.00	66.53	6394.21	47.68	66.45	18579.28	57.35	35.72	16.59	60.35	0.00	68.62	136.97	13.87	4829.85	34.07	35.30	74.00	9550.20	150.62	198.94	28.19	56.46	5957.64	59.89
25	I3	Intron	0	1.37	7.91	0.15	0.00	2.23	0.25	2.40	1.68	2.21	14.65	5.22	0.34	0.00	1.57	1.77	1.13	2.46	8.77	10.51	1.76	0.52	4.12	2.15	0.59	0.78	0.57	5.19	2.68	0.00
26	I3_SR1	SilentIntronRegion	0	1.38	7.98	0.15	0.00	2.25	0.25	2.42	1.70	2.23	14.78	5.27	0.34	0.00	1.59	1.78	1.14	2.48	8.85	10.61	1.78	0.53	4.16	2.17	0.60	0.79	0.57	5.24	2.71	0.00
27	E4_Aa	NovelBoundary	0	0.00	3.88	0.00	0.00	0.00	0.00	7.32	0.00	0.00	21.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.84	0.00	0.00	0.00	0.00	0.00	0.00
28	ER4a	ExonRegion	0	215.08	12584.99	1496.14	144.54	849.06	348.09	6903.85	1533.40	2129.31	17430.97	689.98	1826.85	292.42	473.38	152.18	767.59	941.91	1367.12	3774.17	406.64	1325.23	591.98	10129.86	357.77	1209.33	273.92	334.36	6295.00	4991.57
29	E4_Da	NovelBoundary	0	0.00	4.46	0.00	0.00	0.00	0.00	2.92	0.00	0.00	5.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	0.00	0.00	0.00	0.00
30	E4a_E5a	KnownJunction	0	2.65	14954.99	0.00	0.00	0.00	1.80	8200.94	2.39	3.41	19314.04	0.00	0.00	0.00	0.00	0.00	0.00	71.26	0.00	5079.37	0.00	1.56	0.00	9547.94	0.00	5.15	0.00	2.09	9387.89	3.14
31	E4a_E6a	NovelJunction	0	0.00	30.15	0.00	0.00	0.00	0.00	0.00	2.44	0.00	18.41	0.00	1.63	0.00	0.93	0.00	0.00	0.92	0.00	8.09	0.00	0.00	0.00	22.46	0.00	0.00	0.00	5.17	6.60	0.00
32	I4	Intron	0	0.00	6.78	6.07	0.00	1.04	0.00	3.87	1.38	10.52	14.94	0.25	4.14	0.00	11.01	0.49	0.00	0.64	9.08	5.79	0.72	2.44	0.00	3.09	0.00	0.77	0.00	0.20	1.22	1.36
33	I4_SR1	SilentIntronRegion	0	0.00	7.07	6.33	0.00	1.09	0.00	4.04	1.44	10.98	15.45	0.27	4.32	0.00	11.49	0.51	0.00	0.66	9.47	6.05	0.75	2.54	0.00	3.22	0.00	0.80	0.00	0.20	1.21	1.42
34	I4_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00
35	I4_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.61	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00
36	ER5a	ExonRegion	0	0.00	14146.32	701.90	19.50	0.00	0.00	7805.15	1237.51	471.41	19711.16	0.60	689.92	0.00	139.42	0.00	0.00	97.46	122.13	4257.86	0.00	27.58	0.23	11070.77	1.88	108.57	0.00	2.44	9850.26	0.11
37	I5	Intron	0	1.09	78.00	0.00	1.21	1.66	0.00	33.13	10.61	1.33	83.42	6.65	2.31	0.33	0.92	5.92	0.00	3.54	9.68	50.88	6.41	2.18	5.50	41.06	0.00	2.90	0.00	9.62	27.62	0.00
38	I5_AR1	ActiveIntronRegion	0	0.00	40.29	0.00	0.00	0.00	0.00	9.09	0.00	0.00	39.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.29	17.96	0.30	0.00	0.00	5.27	0.00	0.00	0.00	0.00	2.97	0.00
39	I5_AR2	ActiveIntronRegion	0	1.62	96.49	0.00	1.80	2.45	0.00	44.87	15.73	1.98	104.73	9.87	3.42	0.49	1.37	8.77	0.00	5.25	14.20	66.80	9.33	3.23	8.15	58.35	0.00	4.30	0.00	14.26	39.53	0.00
40	E6_Aa	NovelBoundary	0	0.00	259.15	23.67	0.00	0.00	0.00	97.04	7.32	16.63	330.83	0.00	12.62	0.00	13.12	0.00	0.00	2.27	0.00	129.48	0.00	0.00	0.00	247.73	0.00	0.00	0.00	0.00	171.73	0.00
41	ER6a	ExonRegion	0	0.53	9654.09	165.27	3.32	4.86	0.51	6251.22	141.73	76.48	13605.16	0.30	119.90	0.00	22.85	0.57	1.06	67.95	149.95	2959.36	1.33	186.85	1.35	7489.28	1.34	17.33	0.20	0.23	5863.22	161.44