Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C6orf125	Gene	0	1143.22	106.24	107.48	1584.42	653.90	445.44	1451.20	803.22	496.97	116.19	78.29	81.24	426.45	198.40	690.86	431.20	161.27	203.02	601.91	391.22	195.14	792.65	279.76	236.30	281.96	394.29	99.49	176.60	345.35
2	374231	Transcript	0	1510.35	153.88	32.31	265.25	123.06	770.23	3428.46	1087.95	669.82	204.48	136.21	110.80	683.26	200.36	1098.01	607.61	202.66	284.27	948.30	422.83	376.80	983.39	456.66	279.05	398.66	652.20	92.33	310.20	598.71
3	374214	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	IG29_AR1	ActiveIntergenicRegion	0	1.99	0.00	0.52	5.54	3.02	0.64	1.56	1.42	1.17	0.00	0.00	0.70	0.50	1.33	2.27	7.29	4.25	0.94	5.43	2.56	0.66	5.29	1.40	0.33	0.22	11.66	0.85	1.51	1.14
5	ER1a	ExonRegion	0	694.15	62.52	126.51	2007.34	714.95	212.21	1029.25	354.97	151.01	69.45	38.15	48.65	241.40	76.52	459.28	316.79	107.63	144.98	412.33	181.41	81.70	494.37	194.24	73.67	94.16	216.64	51.61	110.79	233.62
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.64	0.00	0.00	0.00	0.00	0.00	6.96	0.00	0.00	0.00	3.97	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	1002.40	140.68	58.77	87.36	127.92	318.91	591.72	686.47	238.60	80.17	45.71	40.66	288.06	114.35	343.83	80.55	96.99	75.65	550.06	263.89	97.75	607.23	78.11	245.60	140.29	177.92	37.47	111.52	157.90
8	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	I1_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.83	0.00	0.00	0.00	0.00	0.24	0.00	0.00	1.48	0.00	0.00	0.00	1.05	0.00	0.00	0.00	0.00	1.43	0.00	1.13	0.00
10	I1_AR3	ActiveIntronRegion	0	6.57	1.56	3.51	11.57	1.58	2.00	5.53	2.67	2.62	3.50	2.11	5.18	2.83	4.16	4.15	1.60	5.78	0.93	43.31	18.50	2.99	5.24	2.04	3.82	1.85	1.01	0.59	2.63	1.40
11	I1_SR3	SilentIntronRegion	0	3.07	1.11	3.30	1.38	0.47	2.02	1.80	1.77	1.95	0.90	0.97	4.70	1.31	2.27	0.00	2.39	2.97	2.05	9.66	1.85	1.28	1.30	1.39	0.69	1.17	1.44	0.27	1.25	0.86
12	I1_AR4	ActiveIntronRegion	0	3.56	0.00	1.21	6.48	0.88	3.11	2.72	1.02	3.25	1.58	1.94	3.07	0.82	1.62	0.00	0.90	4.02	1.79	3.76	1.00	5.57	2.39	1.64	2.09	0.52	0.00	2.62	2.74	0.14
13	I1_AR5	ActiveIntronRegion	0	1.32	0.00	0.81	0.00	0.00	0.84	0.46	1.02	0.91	0.82	1.02	0.43	0.38	1.80	2.43	1.74	2.50	3.29	1.09	0.00	3.99	2.02	1.07	1.32	0.00	0.00	0.00	1.63	0.00
14	I1_AR6	ActiveIntronRegion	0	1.95	1.17	0.44	2.89	0.00	2.55	1.06	1.17	0.68	0.53	2.90	0.22	0.17	1.28	5.43	2.45	2.10	2.58	5.52	0.50	2.33	0.33	0.50	0.98	0.26	2.11	0.67	0.74	0.12
15	I1_SR5	SilentIntronRegion	0	2.14	0.00	0.23	0.00	0.00	0.77	1.79	0.00	0.90	0.00	0.00	0.00	0.41	0.51	0.00	0.00	2.37	1.71	0.00	1.11	0.00	0.18	0.00	1.21	0.00	2.54	0.00	0.00	0.00
16	I1_AR7	ActiveIntronRegion	0	2.76	0.00	1.12	0.00	0.00	0.00	5.47	0.00	2.25	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.30	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	2.02	0.00	0.00	0.00
17	I1_SR6	SilentIntronRegion	0	4.08	3.28	0.41	0.05	1.68	0.71	3.13	2.07	1.14	0.54	0.18	0.62	0.00	0.81	1.73	0.93	4.91	0.72	4.79	3.24	1.07	1.17	1.00	3.83	1.61	3.58	0.00	1.22	0.00
18	I1_AR8	ActiveIntronRegion	0	1.78	0.00	0.72	6.07	4.56	1.77	0.24	1.00	1.87	0.00	0.61	0.71	0.00	0.26	0.00	0.90	4.26	1.67	1.76	1.38	0.60	1.50	0.83	0.47	0.00	0.48	0.00	0.00	0.00
19	E2_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.45	4.30	1.20	0.00	3.82	2.21	0.00	8.09	3.31	1.72	0.00	1.92	3.05	1.74	0.00	0.00	0.00	0.00
20	ER2a	ExonRegion	0	2281.57	198.32	27.54	237.32	104.94	1028.18	2955.09	1725.98	864.81	188.11	117.14	112.28	805.75	244.78	995.49	680.09	211.22	325.86	960.02	640.98	498.97	1611.19	444.57	348.94	519.06	734.75	104.45	272.37	667.43
21	E2_Da	NovelBoundary	0	7.79	0.00	0.00	0.00	0.00	4.76	2.75	0.00	0.00	3.28	0.00	0.00	0.00	2.04	0.00	10.86	9.41	4.62	0.00	0.00	3.61	0.00	0.00	5.08	0.00	5.28	0.00	1.75	1.29
22	E2a_E3a	KnownJunction	0	1247.07	122.64	10.61	471.07	136.32	963.60	6738.59	851.39	906.05	345.17	245.77	179.45	955.97	241.95	1954.73	1062.19	299.78	451.30	1334.81	363.63	533.67	731.74	847.29	242.61	536.64	1043.93	135.08	546.73	970.79
23	E2a_E4a	NovelJunction	0	16.04	0.00	0.00	8.63	0.00	1.46	13.56	7.61	5.94	0.00	0.00	0.00	6.81	4.25	9.97	6.35	1.26	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	5.62	0.00	0.00	6.11
24	I2	Intron	0	14.64	3.21	1.96	2.97	3.71	4.65	3.06	1.14	2.05	2.09	0.49	1.32	0.72	4.75	3.49	9.69	6.49	4.79	7.06	4.08	2.85	1.12	0.62	1.48	1.09	2.49	0.63	0.90	0.55
25	I2_SR1	SilentIntronRegion	0	11.74	4.52	2.05	2.94	4.50	5.07	2.27	1.05	2.72	2.66	0.37	1.71	0.80	4.28	3.01	5.34	6.54	6.25	7.85	1.61	3.60	1.07	0.70	1.76	1.02	2.09	0.00	0.83	0.48
26	I2_AR1	ActiveIntronRegion	0	20.82	0.49	1.80	3.06	2.08	3.81	4.73	1.34	0.67	0.92	0.76	0.53	0.55	5.77	4.50	18.85	6.45	1.78	5.45	9.24	1.32	1.24	0.46	0.92	1.22	3.35	1.95	1.04	0.71
27	E3_Aa	NovelBoundary	0	26.66	0.00	0.00	72.26	0.00	3.45	66.48	2.49	0.00	10.19	0.00	2.86	0.00	50.69	49.83	162.48	12.65	4.62	0.00	22.25	1.48	0.00	2.02	2.75	5.57	19.70	12.23	10.02	0.00
28	ER3a	ExonRegion	0	1329.11	134.73	26.11	328.34	141.26	731.56	2815.57	1107.65	1072.30	250.00	221.38	178.87	784.42	359.49	1412.31	742.91	288.90	354.75	1049.80	581.13	336.63	711.49	584.97	359.03	573.69	811.41	279.26	364.08	696.87
29	E3_Da	NovelBoundary	0	14.27	0.00	2.39	0.00	0.00	8.71	0.00	4.73	0.00	6.79	0.00	4.43	0.00	8.77	16.74	21.04	15.69	9.25	0.00	0.00	8.66	1.94	0.00	0.00	1.78	0.00	0.00	4.04	2.67
30	E3a_E4a	KnownJunction	1	1797.11	215.13	99.71	603.08	360.32	552.42	556.81	1481.28	768.13	104.54	82.47	105.66	476.26	341.96	669.91	237.76	254.33	229.12	1059.66	858.25	191.49	1110.61	172.32	508.37	425.22	271.56	357.87	182.20	378.66
31	I3	Intron	0	10.10	3.71	3.23	5.31	4.91	12.88	5.55	2.83	3.92	5.01	1.67	2.76	0.77	13.49	5.11	26.78	19.71	8.58	11.67	6.19	5.25	0.57	0.86	6.38	3.86	3.54	0.73	1.86	3.01
32	I3_AR1	ActiveIntronRegion	0	9.87	6.08	2.58	3.73	7.04	14.51	4.76	2.94	3.49	6.09	1.88	2.98	0.72	12.96	4.87	31.68	16.45	9.16	16.07	8.33	6.45	0.51	0.81	7.72	3.48	3.16	1.36	2.54	2.47
33	I3_SR1	SilentIntronRegion	0	8.97	4.13	4.10	2.34	4.42	11.30	6.16	2.95	1.26	4.47	1.63	1.70	0.00	14.57	4.80	19.24	17.28	6.91	8.47	6.42	3.30	0.58	0.29	2.10	4.44	1.02	0.30	1.59	2.59
34	I3_AR2	ActiveIntronRegion	0	11.02	1.29	4.13	6.66	2.27	18.91	8.54	2.06	5.30	5.41	2.81	2.21	1.65	13.06	3.38	30.71	23.33	11.66	9.27	4.94	6.27	0.47	0.84	5.16	4.83	2.18	0.00	0.95	3.62
35	I3_SR2	SilentIntronRegion	0	0.00	3.25	0.00	0.00	2.47	1.40	1.02	0.02	1.15	2.19	0.00	0.62	0.00	0.93	0.00	13.43	0.78	1.95	4.84	2.78	1.44	0.00	0.00	2.17	0.72	2.38	0.00	0.00	1.36
36	I3_AR3	ActiveIntronRegion	0	13.06	2.01	3.54	10.45	5.18	7.46	4.27	4.14	6.01	3.83	0.47	4.41	0.68	17.44	9.14	23.31	28.47	7.19	11.00	4.54	4.53	0.96	1.68	9.97	3.79	8.12	0.96	2.38	4.08
37	E4_Aa	NovelBoundary	0	3.01	0.00	2.49	0.00	0.00	12.05	0.00	0.00	14.25	7.55	0.00	2.86	0.00	17.57	15.95	36.41	37.14	0.00	0.00	10.75	7.90	0.00	2.17	26.08	3.22	9.01	0.00	0.00	4.99
38	ER4a	ExonRegion	0	1044.82	100.36	152.76	2203.31	1015.26	325.29	725.70	747.06	464.55	81.24	46.91	63.06	315.07	236.99	516.57	321.87	144.46	151.42	469.25	421.43	127.45	779.98	179.13	302.25	256.88	268.96	75.52	130.00	188.18
39	IG28	Intergenic	0	16.83	3.89	7.73	23.16	8.43	12.63	14.26	12.41	9.73	6.03	2.98	7.18	4.00	17.99	18.80	39.32	32.25	8.74	19.74	12.07	5.72	12.95	4.53	14.37	7.48	8.58	3.47	4.08	7.74
40	IG28_AR2	ActiveIntergenicRegion	0	19.12	4.17	8.88	28.32	9.64	13.57	17.02	14.92	10.68	7.18	3.57	8.10	4.67	19.32	20.73	42.87	36.08	10.17	23.06	13.68	6.51	14.98	5.54	15.97	8.27	10.06	3.99	4.66	8.92
41	IG28_SR1	SilentIntergenicRegion	0	9.16	2.05	2.06	0.00	2.99	6.70	3.07	1.17	5.72	1.01	0.00	3.40	0.42	12.08	7.98	25.15	17.02	2.76	6.45	4.81	1.94	6.58	0.00	6.16	2.79	1.28	1.44	0.69	1.85
42	IG28_AR1	ActiveIntergenicRegion	0	4.24	3.32	3.08	0.00	3.05	10.19	0.74	1.10	5.38	0.78	0.71	2.72	1.54	12.25	12.39	22.30	13.53	2.02	3.51	4.93	2.45	1.38	0.00	8.40	5.04	2.57	0.84	2.28	3.09