Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TAF11	Gene	0	376.72	170.70	181.29	343.65	216.76	220.66	399.16	349.79	194.91	125.83	168.49	267.48	213.65	169.78	275.35	226.91	216.05	130.42	382.27	314.43	326.93	211.63	208.66	189.54	134.94	135.39	145.90	133.95	175.91
2	361288	Transcript	0	369.59	129.78	162.30	398.67	194.92	236.03	473.66	370.71	127.88	121.14	179.57	277.78	202.73	141.56	224.57	172.67	159.25	107.78	332.68	257.76	320.05	196.68	207.79	145.22	121.35	132.49	157.44	115.51	143.12
3	420584	Transcript	0	5.84	0.00	3.81	0.00	73.69	7.40	16.48	0.00	5.39	5.11	5.63	1.45	14.71	3.26	0.00	3.44	1.40	0.00	8.09	0.00	14.80	11.13	0.00	3.05	0.00	0.00	0.00	6.69	0.00
4	ER1a	ExonRegion	0	1.34	0.07	0.51	1.07	1.66	0.97	1.47	0.27	0.09	0.27	0.30	0.82	0.08	0.13	0.00	1.90	0.69	2.50	3.39	0.59	0.59	2.89	0.90	0.13	0.63	1.18	2.17	0.75	1.06
5	E1_Ab	KnownBoundary	0	0.00	0.00	0.97	0.00	6.19	3.41	4.75	0.00	0.00	1.56	0.00	2.44	0.00	0.00	0.00	8.95	0.92	14.64	8.09	0.00	3.13	9.48	1.92	0.00	2.96	5.02	10.29	1.89	4.13
6	ER1b	ExonRegion	0	302.28	63.74	97.25	240.80	154.08	100.04	195.51	206.07	62.38	53.11	61.77	140.71	122.24	70.07	141.22	153.88	121.61	109.28	145.41	194.87	173.70	169.31	150.97	71.47	69.52	124.12	47.18	114.12	153.36
7	E1_Da	NovelBoundary	0	19.29	23.27	5.41	0.00	0.00	1.69	16.08	10.80	1.28	13.74	12.84	10.09	1.34	21.54	0.00	65.10	56.34	27.74	0.00	7.44	5.29	0.00	0.00	0.00	3.22	3.52	0.00	11.82	7.10
8	E1a_E2a	KnownJunction	0	229.34	101.99	90.47	120.57	60.86	200.66	599.21	188.81	114.11	137.77	170.32	298.34	204.57	139.43	326.49	279.30	213.59	210.88	323.47	250.16	266.01	91.84	345.09	121.60	109.56	181.23	48.75	148.54	245.59
9	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	1.52	0.00	0.00	0.00	0.00	9.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.64	0.00	0.00	0.00	0.00
10	I1	Intron	0	15.53	7.39	3.51	12.16	3.81	12.14	6.08	3.22	10.91	8.51	5.06	5.66	1.95	11.91	10.37	33.60	39.43	20.35	23.91	7.08	16.62	1.26	0.97	7.30	4.97	3.17	1.38	5.62	2.88
11	I1_AR1	ActiveIntronRegion	0	17.40	5.88	8.93	8.49	2.26	11.05	4.43	6.49	7.21	9.68	6.39	6.06	1.29	15.03	7.11	28.69	51.43	18.14	22.85	2.90	16.36	0.28	0.95	4.15	3.92	5.37	1.53	5.00	5.27
12	I1_SR1	SilentIntronRegion	0	15.52	7.84	2.63	14.72	2.73	12.12	4.34	3.12	8.18	7.33	4.02	4.76	3.26	11.90	9.96	36.31	37.29	18.65	19.82	5.31	19.14	1.01	1.21	5.80	4.43	3.95	0.20	5.15	3.70
13	I1_AR2	ActiveIntronRegion	0	14.83	7.61	2.15	11.41	5.38	12.63	8.27	2.03	14.79	9.09	5.46	6.30	1.07	10.72	12.05	33.24	36.65	22.76	27.97	10.30	14.57	1.88	0.77	9.88	5.86	1.64	2.35	6.29	1.23
14	E2_Aa	NovelBoundary	0	4.60	9.31	0.00	10.14	13.41	33.46	10.53	0.00	47.02	10.99	18.82	7.65	8.06	13.76	25.11	29.68	95.06	13.87	89.02	4.13	56.68	2.29	2.22	29.85	3.75	4.25	0.00	15.91	2.05
15	ER2a	ExonRegion	0	337.07	162.08	220.23	343.15	199.76	221.08	437.46	333.68	134.85	136.93	207.93	296.94	233.90	161.49	233.16	192.56	226.58	133.91	349.13	357.33	320.26	193.04	288.91	170.79	141.17	198.14	198.42	209.47	258.97
16	E2_Da	NovelBoundary	0	12.74	13.86	2.37	0.00	0.00	17.50	2.35	3.93	9.78	7.47	3.61	5.96	5.32	5.98	0.00	17.29	50.83	18.49	64.74	7.03	31.13	0.00	0.00	13.76	19.55	4.08	0.00	9.17	3.43
17	E2a_E3a	KnownJunction	0	426.82	222.79	357.40	809.28	409.25	302.07	551.84	436.60	181.89	180.07	207.21	288.16	248.96	196.13	319.31	251.76	181.65	119.44	541.75	561.44	403.11	280.47	229.60	182.38	182.00	164.10	157.49	117.45	164.37
18	E2a_E5a	NovelJunction	0	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	0.00	5.19	1.87	1.97	3.21	0.00	2.98	0.00	0.00	0.00	3.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	Ix	Intron	0	9.87	6.52	1.23	6.16	4.20	9.87	5.57	2.26	10.45	6.47	3.65	5.19	0.40	10.62	14.80	27.31	19.06	16.77	31.96	6.67	17.50	0.44	1.11	6.20	3.77	1.06	0.79	1.80	3.65
20	Ix_AR2	ActiveIntronRegion	0	3.44	6.08	0.67	5.76	3.88	6.07	0.81	0.74	2.26	4.64	3.82	0.50	0.00	8.18	15.13	12.95	5.40	9.43	32.04	4.43	14.31	0.00	0.00	5.18	2.87	1.89	0.00	0.00	0.80
21	Ix_SR1	SilentIntronRegion	0	5.47	2.74	0.00	12.19	0.00	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	0.77	0.00	0.00	0.00	1.64	2.72	2.34	0.00	0.00	1.54	0.00	1.21	0.00	0.00	0.00	0.00
22	Ix_AR1	ActiveIntronRegion	0	11.58	6.98	1.46	5.70	4.66	11.57	7.05	2.78	13.08	7.23	3.97	6.62	0.51	12.06	16.16	32.78	23.60	19.69	34.77	7.54	19.82	0.57	1.29	7.01	4.20	1.00	1.02	2.33	4.56
23	E3_Aa	NovelBoundary	0	13.15	13.48	2.49	0.00	6.19	5.18	8.70	7.22	14.65	22.93	4.37	5.36	0.00	15.07	18.34	72.90	67.55	32.36	97.11	14.39	28.40	0.00	0.00	10.65	0.00	4.38	0.00	2.29	9.67
24	ER3a	ExonRegion	0	438.44	146.29	220.69	522.94	349.27	279.21	506.82	399.97	163.70	158.54	185.01	324.15	222.53	179.57	276.28	230.61	206.40	139.75	367.72	361.68	357.50	238.45	224.31	193.02	159.55	126.68	115.30	109.38	153.33
25	E3_Da	NovelBoundary	0	49.25	9.31	8.70	0.00	0.00	21.14	19.51	18.11	25.46	9.63	9.27	20.09	1.59	28.38	25.51	45.67	56.09	23.89	8.09	11.33	21.50	18.04	2.22	7.84	14.89	0.00	0.00	2.11	10.93
26	E3a_E4a	KnownJunction	0	438.14	154.35	161.07	671.23	301.82	220.15	566.54	444.56	145.84	136.57	231.79	347.89	227.02	178.89	333.46	213.43	175.12	136.39	364.16	255.21	290.56	262.14	243.64	179.98	120.44	143.50	116.74	116.55	171.17
27	E3a_E5a	KnownJunction	0	5.84	0.00	3.81	0.00	73.69	7.40	16.48	0.00	5.39	5.11	5.63	1.45	14.71	3.26	0.00	3.44	1.40	0.00	8.09	0.00	14.80	11.13	0.00	3.05	0.00	0.00	0.00	6.69	0.00
28	Ix	Intron	0	18.76	8.24	3.18	10.91	11.15	7.32	4.60	4.90	13.24	8.79	8.15	10.56	1.23	10.85	15.72	37.24	28.41	13.32	15.81	18.29	13.57	2.74	0.69	13.92	4.90	4.19	2.09	7.44	5.60
29	Ix_AR1	ActiveIntronRegion	0	19.05	8.36	3.23	11.08	11.32	7.44	4.67	4.98	13.44	8.93	8.28	10.72	1.25	11.01	15.95	37.81	28.83	13.52	16.05	18.57	13.78	2.79	0.70	14.13	4.97	4.25	2.12	7.56	5.68
30	E4_Aa	NovelBoundary	0	40.94	4.75	12.01	38.61	14.00	17.00	36.85	2.54	44.95	16.42	6.07	22.89	7.99	39.84	69.36	52.71	86.37	9.89	8.09	18.77	34.21	8.65	0.00	21.00	8.49	0.00	0.00	3.46	25.45
31	ER4a	ExonRegion	0	524.60	211.93	220.10	438.16	229.05	338.99	643.96	532.79	165.66	165.11	299.56	373.74	279.85	209.06	294.93	254.90	226.05	154.69	470.64	402.85	510.54	292.40	293.78	213.01	181.76	170.43	236.25	155.21	212.06
32	E4_Da	NovelBoundary	0	42.53	16.97	9.17	8.84	7.37	23.71	19.28	15.13	35.63	13.70	4.56	15.87	1.97	34.14	27.51	60.74	83.78	46.11	16.18	11.58	30.28	2.04	0.00	12.20	9.55	5.19	0.00	18.96	5.28
33	E4a_E5a	KnownJunction	0	514.29	152.79	267.51	484.23	247.14	384.02	682.69	505.22	199.95	182.59	186.64	388.67	303.99	178.14	269.88	220.47	235.13	137.55	492.52	372.39	478.52	229.28	292.84	187.76	182.57	214.83	274.58	189.52	188.18
34	Ix	Intron	1	33.46	12.39	6.72	19.02	16.65	19.90	18.48	5.73	29.99	11.71	7.75	8.55	4.46	19.81	28.14	53.62	50.68	24.43	31.96	14.60	29.62	3.96	1.64	19.89	9.86	3.22	2.78	7.78	6.78
35	Ix_AR1	ActiveIntronRegion	0	33.56	12.42	6.74	19.07	16.70	19.96	18.54	5.74	30.07	11.74	7.78	8.58	4.48	19.87	28.23	53.77	50.83	24.50	32.05	14.64	29.71	3.97	1.65	19.95	9.89	3.23	2.78	7.81	6.80
36	E5_Aa	NovelBoundary	0	87.30	12.41	17.91	58.02	19.90	50.72	35.30	20.65	89.13	18.69	18.28	26.99	1.97	33.28	34.68	127.52	168.32	23.89	24.28	11.83	81.14	1.99	0.00	63.46	24.55	3.82	0.00	20.49	17.37
37	ER5a	ExonRegion	0	401.24	207.71	199.39	362.52	233.72	246.75	433.19	385.49	256.07	143.03	184.65	294.45	238.40	201.73	330.20	260.31	250.75	138.73	463.10	342.45	364.29	225.83	211.94	231.34	151.37	132.57	165.17	134.27	176.17