Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AL133351.2	Gene	0	8.23	6.22	5.71	0.34	0.69	4.37	1.43	0.96	3.06	11.43	3.55	0.88	0.77	18.24	5.28	7.87	8.35	24.49	23.77	2.89	8.86	0.77	1.80	1.53	1.56	2.23	0.35	0.31	4.47
2	499208	Transcript	0	5.63	3.25	3.59	0.00	0.58	3.47	0.96	1.15	1.92	7.60	2.13	0.74	0.77	13.07	3.19	6.09	6.59	16.19	11.90	2.35	5.14	0.71	1.41	0.97	1.18	1.39	0.15	0.10	2.77
3	501631	Transcript	0	0.22	0.70	0.05	0.00	0.04	0.00	0.00	0.00	0.00	0.03	0.00	0.00	0.00	0.49	0.00	0.02	0.17	0.28	1.27	0.00	0.02	0.00	0.00	0.00	0.00	0.65	0.24	0.00	0.52
4	ER1a	ExonRegion	0	1.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.03	0.00	0.00	0.00	0.00	1.99	0.00	0.06	0.78	0.07	4.13	0.00	0.02	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.10
5	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1b	ExonRegion	0	1.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER2a	ExonRegion	0	0.00	0.91	0.28	0.00	0.23	0.00	0.00	0.00	0.02	0.18	0.00	0.00	0.00	1.72	0.00	0.14	0.04	1.66	7.62	0.00	0.10	0.00	0.00	0.00	0.00	0.29	1.44	0.00	3.12
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.60	0.00	0.00	0.00
10	I2	Intron	0	0.32	10.63	0.84	14.73	2.21	22.31	7.67	1.48	20.75	4.26	3.40	0.71	13.34	23.87	5.29	17.93	4.56	19.35	33.45	1.99	69.89	5.33	2.26	9.48	4.08	0.63	5.60	0.24	6.95
11	I2_SR1	SilentIntronRegion	0	0.32	10.64	0.84	14.74	2.21	22.33	7.68	1.48	20.77	4.27	3.40	0.71	13.36	23.89	5.29	17.95	4.57	19.37	33.48	2.00	69.95	5.33	2.27	9.49	4.08	0.63	5.60	0.25	6.96
12	Ix	Intron	0	6.66	5.05	8.31	10.82	0.65	4.82	2.77	2.70	5.50	7.50	4.12	3.17	2.88	18.32	4.21	9.03	8.28	9.56	10.92	0.33	9.62	2.00	3.61	5.82	2.66	11.02	6.67	0.22	6.72
13	Ix_SR1	SilentIntronRegion	0	7.81	5.41	9.92	10.02	0.74	4.97	2.65	3.12	6.75	8.16	4.25	3.75	3.17	21.22	6.09	9.06	9.61	10.42	12.60	0.49	9.44	2.22	4.59	6.40	2.65	12.32	7.80	0.30	8.45
14	Ix_AR1	ActiveIntronRegion	0	5.06	4.56	6.08	12.00	0.52	4.64	2.96	2.12	3.76	6.58	3.95	2.37	2.48	14.31	1.58	9.03	6.44	8.40	8.60	0.12	9.91	1.70	2.25	5.03	2.69	9.23	5.10	0.11	4.30
15	Ix	Intron	0	2.36	19.89	1.84	6.77	2.69	16.61	6.35	0.29	19.86	21.65	5.99	2.38	1.27	25.13	10.84	19.42	10.93	75.52	91.27	4.40	26.72	1.35	2.99	11.09	1.18	0.93	4.18	0.13	6.12
16	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	3.55	4.06	0.00	3.05	0.00	1.53	11.30	7.70	0.00	3.23	0.00	9.73	0.00	0.28	2.73	32.30	10.56	0.00	5.55	0.00	4.12	5.62	0.00	1.22	0.00	0.00	0.00
17	Ix_SR1	SilentIntronRegion	0	1.67	15.54	4.45	5.77	3.39	12.45	3.87	0.84	25.65	28.43	8.59	3.00	1.24	31.24	6.61	19.32	12.11	70.50	89.21	6.34	19.99	1.38	4.58	11.88	1.70	1.12	2.63	0.45	5.28
18	Ix_AR2	ActiveIntronRegion	0	1.38	7.74	1.16	0.00	7.65	9.52	13.82	0.00	20.95	13.15	6.42	5.26	2.51	17.69	11.20	15.82	4.29	69.40	128.66	3.21	15.84	1.48	3.42	8.22	2.25	1.35	1.50	1.11	2.88
19	Ix_AR3	ActiveIntronRegion	0	0.00	2.30	0.00	0.00	0.00	1.10	4.03	0.00	8.09	2.17	0.00	2.84	0.65	1.72	9.52	2.53	1.10	9.55	27.15	0.00	4.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.21
20	Ix_AR4	ActiveIntronRegion	0	3.73	25.17	0.62	7.42	3.10	24.48	10.02	0.00	25.29	27.67	6.02	2.58	1.51	29.64	14.33	30.13	12.49	93.68	113.84	4.57	40.01	1.31	2.67	12.49	0.60	0.79	5.56	0.00	9.13
21	Ix_SR2	SilentIntronRegion	0	1.14	14.97	2.08	12.35	3.23	19.83	6.99	0.00	18.95	19.91	11.99	4.47	1.84	19.11	15.27	16.01	21.53	102.29	87.46	3.94	32.97	1.19	3.29	12.88	3.17	2.59	7.97	0.00	7.62
22	Ix_AR5	ActiveIntronRegion	0	1.13	18.94	1.47	6.30	0.86	7.25	1.42	0.32	4.63	6.09	2.30	0.44	0.69	14.54	8.07	2.18	5.51	45.33	55.62	2.77	10.03	1.59	1.91	8.32	1.26	0.55	2.90	0.00	1.76
23	Ix	Intron	0	10.73	28.29	14.19	9.88	3.19	18.00	7.38	1.07	17.97	44.10	16.88	4.76	5.59	56.72	11.00	24.32	39.26	107.96	98.27	2.32	26.34	6.60	8.00	17.40	4.72	3.42	6.51	0.65	14.84
24	Ix_AR1	ActiveIntronRegion	0	12.36	32.51	16.35	10.18	3.61	20.24	8.48	0.88	19.79	47.88	19.82	5.51	6.38	61.64	12.79	26.21	44.58	112.49	110.74	2.12	27.97	7.00	8.51	18.55	5.12	3.29	7.04	0.62	17.57
25	Ix_AR2	ActiveIntronRegion	0	7.66	19.95	12.82	19.14	1.47	10.86	5.57	2.60	21.03	39.66	14.25	5.49	5.33	72.75	7.82	19.95	35.97	121.85	97.97	1.61	23.54	2.94	5.88	21.16	4.52	5.15	11.34	2.45	9.67
26	Ix_AR3	ActiveIntronRegion	0	3.95	20.87	3.32	25.24	0.00	6.44	3.64	1.99	12.62	34.71	14.70	0.65	4.94	49.80	8.90	11.51	15.38	119.33	80.93	3.25	21.76	9.26	6.28	23.96	6.25	0.89	1.29	0.00	7.92
27	Ix_SR2	SilentIntronRegion	0	5.21	11.73	6.50	1.74	2.37	12.02	3.43	1.34	9.26	29.11	3.47	1.80	1.89	28.81	3.57	19.53	19.58	78.94	40.34	3.36	20.44	5.25	6.59	8.88	2.43	4.20	3.56	0.40	4.55
28	Ix	Intron	0	1.39	2.40	0.22	0.00	0.00	3.76	0.26	0.00	3.79	4.70	1.55	0.00	0.85	4.76	1.31	1.94	2.52	7.06	13.72	1.08	9.28	0.23	1.41	3.08	0.19	0.20	0.00	0.00	1.56
29	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	4.33	1.19	0.00	0.00	3.33	0.00	0.00	0.33	0.00	4.53	0.00	0.00	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
30	Ix_SR1	SilentIntronRegion	0	1.43	2.47	0.22	0.00	0.00	3.85	0.27	0.00	3.90	4.74	1.57	0.00	0.87	4.84	1.35	1.99	2.59	7.26	14.01	1.11	9.55	0.24	1.45	3.13	0.19	0.21	0.00	0.00	1.61
31	Ix	Intron	0	6.28	11.98	3.88	0.87	0.79	14.82	2.13	0.30	7.66	19.55	5.37	2.38	1.82	25.46	9.95	14.06	11.90	34.04	57.30	3.56	26.05	0.73	3.38	5.77	1.51	0.58	1.79	0.07	4.21
32	Ix_AR1	ActiveIntronRegion	0	6.96	17.93	5.66	0.97	1.32	13.95	2.45	0.25	6.29	22.66	5.15	3.59	2.45	33.03	12.81	20.23	14.94	41.31	68.28	5.06	29.52	1.46	3.91	9.02	1.93	0.85	4.46	0.00	6.05
33	Ix_SR1	SilentIntronRegion	0	5.69	10.05	2.42	0.00	0.59	16.41	1.94	0.44	10.62	21.05	5.02	1.49	2.34	19.74	14.09	12.61	11.87	31.01	58.93	3.47	27.00	0.65	4.14	4.41	1.90	0.57	1.10	0.00	4.11
34	Ix_SR2	SilentIntronRegion	0	6.36	9.19	3.90	1.67	0.57	14.60	2.12	0.21	6.27	16.07	6.11	2.30	0.83	25.45	3.87	10.35	9.75	31.36	47.99	2.48	23.03	0.21	2.32	4.52	0.83	0.37	0.21	0.19	2.88
35	E3_Aa	NovelBoundary	0	5.43	13.48	20.41	0.00	0.00	10.93	10.87	0.00	12.97	30.08	9.62	1.27	0.00	58.56	24.32	24.33	25.68	56.51	80.92	8.27	50.70	0.00	11.23	16.69	3.71	3.26	2.39	0.00	10.27
36	Ix_AR3	ActiveIntronRegion	0	4.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.89	0.00	0.00	0.00	0.00	0.00	9.45	0.00	19.10	13.88	0.00	2.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	ER3a	ExonRegion	0	3.60	10.54	14.41	0.00	2.41	2.31	0.00	0.00	3.11	22.26	6.00	0.69	0.73	17.27	5.17	14.66	3.34	46.85	51.52	1.11	19.69	0.00	3.04	4.82	1.60	1.35	0.00	0.84	4.85
38	E3_Da	NovelBoundary	0	19.88	3.68	19.78	0.00	0.00	12.39	5.84	0.00	7.22	18.02	12.31	1.63	1.34	50.92	0.00	6.73	13.87	32.36	16.18	12.07	18.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.57
39	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	4.50	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	Ix	Intron	0	12.97	13.79	5.31	1.03	1.41	9.11	2.90	0.00	6.86	15.18	7.54	1.33	1.49	33.71	7.69	13.70	13.76	43.76	48.79	3.35	20.96	2.08	3.91	4.96	1.65	1.13	1.58	0.00	1.44
41	Ix_AR1	ActiveIntronRegion	0	13.04	13.87	5.34	1.04	1.42	9.16	2.92	0.00	6.90	15.27	7.59	1.34	1.50	33.90	7.73	13.77	13.84	44.00	49.06	3.37	21.08	2.09	3.93	4.98	1.66	1.14	1.59	0.00	1.45
42	E4_Aa	NovelBoundary	0	25.01	16.48	14.63	0.00	0.00	20.83	0.00	0.00	8.83	22.17	3.23	1.75	3.47	35.18	0.00	20.65	32.08	51.63	48.55	10.75	31.29	2.48	6.94	9.03	1.48	1.67	0.00	0.00	4.82
43	ER4a	ExonRegion	0	19.78	17.82	9.53	2.59	0.00	8.01	4.37	0.00	7.90	22.83	7.78	1.42	0.70	38.91	13.47	11.86	17.80	50.91	58.32	3.55	17.84	0.24	2.62	1.14	3.20	6.28	0.44	0.64	5.16
44	E4_Da	KnownBoundary	0	16.04	15.61	8.94	0.00	0.00	16.34	0.00	0.00	10.81	27.44	0.00	1.42	6.37	49.12	9.97	14.84	22.06	38.53	32.37	6.95	19.57	2.43	0.00	3.05	3.11	8.41	2.39	0.00	7.33
45	E4a_E4b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	ER4b	ExonRegion	0	11.25	6.50	7.18	0.00	1.17	6.94	1.93	2.30	3.84	15.20	4.25	1.49	1.55	26.13	6.39	12.18	13.19	32.38	23.81	4.69	10.27	1.43	2.81	1.93	2.36	2.79	0.29	0.19	5.54
47	E4_Ab	KnownBoundary	0	70.25	210.96	119.37	245.24	48.63	347.30	180.05	28.86	172.54	870.41	447.06	95.96	301.88	645.62	77.14	333.61	244.23	802.05	954.24	19.10	624.52	238.95	1122.45	208.70	82.14	155.56	158.88	21.57	888.20
48	ER4c	ExonRegion	0	4.29	1.69	2.00	0.00	0.00	2.05	0.54	0.27	1.28	2.81	1.90	0.23	0.00	5.34	3.03	1.21	2.38	4.48	6.13	2.65	4.28	0.96	0.48	1.14	0.38	0.88	0.00	0.43	3.65
49	ER4d	ExonRegion	0	0.00	3.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00