Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PSMG4	Gene	0	38.32	12.95	10.65	29.98	20.57	17.60	25.81	24.79	26.06	12.78	10.76	26.74	25.55	17.30	16.56	19.05	38.39	16.55	29.90	9.09	33.95	12.21	12.62	10.85	11.04	15.29	4.89	29.02	20.87
2	380306	Transcript	0	0.01	0.00	0.00	0.03	0.00	0.01	0.00	0.01	0.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.02	0.00	0.00	0.02	0.00	0.01	0.01	0.00
3	380305	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.88	2.63	0.92	1.60	0.00	0.00	3.68	0.00	1.00	0.00	0.00	1.58	0.00	4.05	0.00	2.73	0.80	0.00	0.00	0.00	1.23	0.00	0.92	0.00
4	451246	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	454610	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	438998	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	419065	Transcript	0	0.00	12.70	0.00	48.32	5.45	21.49	28.44	35.73	37.49	7.63	26.23	23.22	56.87	18.99	26.71	10.79	19.58	18.49	32.37	19.27	11.71	36.32	15.66	29.37	36.52	40.47	11.68	54.73	20.20
8	473000	Transcript	0	26.37	6.40	4.23	12.94	3.80	9.08	3.08	7.91	5.81	8.41	3.94	10.00	2.59	15.73	5.26	12.52	35.75	10.06	13.22	2.74	21.84	0.64	1.27	6.36	5.18	2.98	1.47	9.51	3.32
9	380303	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	324987	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00	3.24	0.00	8.09	2.98	0.00	0.00	0.00	2.33	3.07	0.00	0.00	8.45	3.30
11	ER1a	ExonRegion	0	0.02	0.00	0.00	0.05	0.00	0.02	0.00	0.03	0.06	0.00	0.00	0.00	0.01	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.04	0.00	0.00	0.04	0.00	0.03	0.02	0.00
12	E1a_E3d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.10	0.00	6.56	2.05
14	E2_Ab	NovelBoundary	1	12.62	0.00	1.00	9.49	26.53	1.73	5.09	1.89	1.34	1.64	0.00	2.47	2.90	1.04	0.00	0.00	2.00	0.00	15.96	3.47	1.64	4.33	8.91	0.00	6.44	16.91	0.00	32.17	15.68
15	ER2a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.27	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.87	0.00	0.00	0.00
16	ER2b	ExonRegion	0	12.53	1.46	8.98	48.43	39.41	7.91	19.04	11.95	5.87	2.41	0.48	6.13	7.25	3.37	4.11	6.97	2.27	18.26	4.63	4.50	13.03	8.29	15.31	2.77	0.95	11.60	0.53	13.29	2.80
17	E2_Ac	KnownBoundary	0	5.78	0.00	2.89	0.00	0.00	0.00	5.72	0.00	0.00	0.00	0.00	1.14	2.74	2.30	0.00	3.60	0.00	0.00	0.00	0.00	0.00	0.00	6.40	0.00	1.44	0.00	0.00	3.59	1.58
18	E2_Ad	KnownBoundary	0	46.89	0.00	35.33	194.34	145.01	32.50	56.30	39.46	25.06	3.83	1.36	21.23	37.54	6.03	24.72	20.58	23.21	0.00	8.09	15.22	60.21	28.39	44.13	11.25	6.86	47.25	0.00	43.54	11.88
19	ER2c	ExonRegion	0	62.16	3.28	40.39	226.69	174.35	38.95	91.38	46.64	31.83	9.63	3.57	21.44	31.61	8.47	28.00	27.84	14.02	68.23	27.15	14.05	60.86	33.65	59.07	8.60	2.86	46.10	3.66	64.66	14.32
20	ER2d	ExonRegion	0	159.93	31.74	51.29	189.03	101.19	62.15	189.51	121.15	99.68	36.84	19.19	134.65	165.23	35.36	79.63	58.66	95.46	63.40	96.44	43.45	124.16	84.75	89.74	24.61	24.53	88.18	8.43	160.40	103.62
21	E2_Da	NovelBoundary	0	12.98	0.00	0.00	0.00	0.00	3.53	0.00	7.07	3.29	1.72	0.00	0.00	0.00	2.86	9.37	0.00	4.79	13.87	0.00	3.89	8.62	0.00	0.00	0.00	0.00	5.84	0.00	0.00	0.00
22	E2a_E3a	KnownJunction	0	317.40	91.13	3.51	28.90	33.16	158.04	385.51	299.34	290.09	89.64	61.69	253.67	319.02	62.92	152.48	170.67	204.99	83.22	145.66	108.42	245.64	163.65	138.39	74.41	81.26	209.03	19.63	270.13	213.86
23	E2a_E3d	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.76	5.26	0.00	3.20	0.00	0.00	7.08	0.00	1.20	0.00	0.00	3.15	0.00	8.09	0.00	5.46	0.00	0.00	0.00	0.00	1.59	0.00	1.84	0.00
24	Ix	Intron	0	19.68	2.82	2.86	3.38	1.11	6.67	1.20	2.57	3.22	5.75	1.89	4.47	1.42	10.61	2.27	4.38	13.06	5.30	9.37	1.32	17.19	0.69	1.33	1.73	1.95	2.19	0.99	4.18	1.33
25	Ix_SR1	SilentIntronRegion	0	19.26	2.77	2.73	3.80	1.15	6.83	1.15	2.35	2.96	5.65	1.95	3.95	1.28	10.14	2.34	3.85	12.46	5.37	8.95	1.30	16.98	0.67	1.31	1.53	1.79	2.10	0.72	4.26	1.45
26	Ix_AR1	ActiveIntronRegion	0	23.21	3.24	3.90	0.00	0.78	5.45	1.60	4.35	5.34	6.55	1.39	8.69	2.59	14.44	1.74	8.74	18.01	4.69	12.79	1.51	18.93	0.86	1.44	3.36	3.22	3.00	3.20	3.55	0.43
27	E3_Aa	NovelBoundary	0	15.87	0.00	2.49	7.98	0.00	10.21	8.64	0.00	8.92	1.56	5.54	6.75	3.47	18.46	16.74	28.30	22.62	13.87	16.18	3.47	13.52	0.00	0.00	7.06	3.86	0.00	7.21	12.00	0.00
28	ER3a	ExonRegion	0	295.69	93.36	9.95	84.10	39.13	127.16	523.27	329.70	353.02	107.62	95.30	352.41	402.15	82.14	210.39	135.03	224.44	126.37	282.63	74.33	286.61	124.93	211.23	69.29	104.38	255.68	58.03	476.23	341.07
29	E3_Da	KnownBoundary	0	42.35	17.35	3.04	0.00	7.22	1.96	2.69	11.40	6.88	1.56	1.27	10.36	0.00	13.87	0.00	7.34	31.74	19.14	24.28	7.28	29.56	1.94	0.00	14.18	5.30	2.15	0.00	3.59	3.27
30	E3a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00	3.24	0.00	8.09	2.98	0.00	0.00	0.00	2.33	3.07	0.00	0.00	8.45	3.30
31	E3a_E3c	KnownJunction	1	0.00	12.70	0.00	48.32	5.45	21.49	28.44	35.73	37.49	7.63	26.23	23.22	56.87	18.99	26.71	10.79	19.58	18.49	32.37	19.27	11.71	36.32	15.66	29.37	36.52	40.47	11.68	54.73	20.20
32	E3a_E3d	KnownJunction	0	237.30	35.39	17.17	49.61	65.43	83.26	247.34	309.44	314.73	57.60	66.65	293.88	269.37	36.74	74.55	40.47	147.37	46.11	218.50	37.46	151.62	79.93	116.03	30.51	39.48	74.71	75.99	275.47	230.37
33	ER3b	ExonRegion	0	25.76	9.66	5.73	21.13	3.39	10.35	4.07	5.10	4.95	8.98	3.14	12.38	0.35	19.15	6.72	11.14	28.40	10.40	20.95	3.23	26.46	2.52	1.84	7.68	2.93	2.14	1.14	6.26	2.70
34	E3_Db	KnownBoundary	0	27.72	3.68	4.14	10.78	0.00	11.63	0.00	8.81	7.22	8.67	0.00	5.33	0.00	14.80	0.00	28.84	11.25	0.00	0.00	0.00	17.09	0.00	2.41	0.00	3.71	0.00	5.07	3.77	2.51
35	E3_Dc	KnownBoundary	0	21.41	0.00	1.32	10.35	0.00	5.33	2.46	7.17	2.50	1.96	3.99	8.55	2.87	7.49	0.00	10.94	13.55	0.00	0.00	7.03	15.68	0.00	0.00	2.63	0.00	2.10	0.00	0.00	0.00
36	ER3c	ExonRegion	0	47.16	3.28	6.73	27.42	4.98	16.50	4.03	12.89	11.52	8.66	4.46	11.13	2.60	28.57	0.00	32.27	29.30	18.42	22.63	5.62	31.02	1.80	0.00	10.22	2.86	1.57	3.66	6.11	4.03
37	ER3d	ExonRegion	0	33.25	7.82	4.43	18.76	3.14	10.04	3.27	9.46	5.84	9.40	4.55	13.31	2.66	20.57	3.31	13.40	43.69	10.43	15.67	2.71	26.53	0.30	1.44	8.24	5.53	2.65	1.69	12.30	3.31
38	E3_Ab	KnownBoundary	0	30.20	0.00	4.46	38.39	0.00	10.78	10.76	15.88	7.61	5.03	11.83	17.47	3.15	15.33	0.00	15.15	42.38	0.00	24.28	0.00	19.49	0.00	1.92	6.10	0.00	3.52	0.00	11.86	0.00
39	ER3e	ExonRegion	0	32.76	1.50	6.89	23.19	3.56	11.08	8.58	14.62	7.00	4.21	11.80	17.71	4.68	22.26	0.48	14.68	54.44	7.88	23.53	2.41	18.14	4.33	2.63	8.30	5.39	5.52	0.42	15.18	4.87
40	E3_Ac	KnownBoundary	0	29.79	3.49	5.41	21.57	7.07	5.26	5.84	15.93	6.03	4.03	2.78	11.26	1.97	21.76	0.00	8.95	40.31	0.00	16.18	0.00	18.13	4.86	2.36	5.74	5.30	6.22	0.00	8.90	3.14
41	ER3f	ExonRegion	0	36.18	28.54	8.70	53.21	17.39	21.75	19.65	41.77	40.61	9.53	22.08	28.13	44.02	32.74	14.15	22.73	65.99	22.47	15.53	14.17	26.19	20.28	11.71	18.45	26.86	20.78	6.09	40.71	29.15
42	E3_Dd	KnownBoundary	1	25.42	4.85	8.12	31.06	7.37	8.79	5.15	11.20	7.55	11.94	0.00	10.72	1.62	17.33	0.00	3.82	55.85	10.02	8.09	2.98	33.45	0.00	9.90	0.00	6.93	4.38	0.00	28.62	2.71
43	E3d_E3d	KnownJunction	0	0.00	19.87	0.00	98.79	14.30	18.15	26.38	55.44	100.65	4.07	29.99	23.25	53.69	29.42	18.94	32.05	29.37	27.61	48.55	7.36	29.00	45.36	6.80	36.07	29.32	14.55	9.74	28.67	42.03
44	ER3g	ExonRegion	0	19.49	4.99	4.02	7.11	4.46	8.11	2.89	6.36	5.79	7.42	3.32	6.69	2.52	10.89	7.21	11.63	27.82	9.68	10.76	2.78	17.15	0.98	1.09	4.47	4.83	3.30	1.26	6.72	3.33
45	E3_Ad	KnownBoundary	0	10.38	12.80	2.49	0.00	12.82	8.59	2.92	0.00	17.14	13.46	3.92	6.39	5.95	21.94	0.00	18.21	38.92	4.62	8.09	3.89	38.59	2.48	0.00	11.25	4.77	4.38	0.00	12.31	13.24
46	ER3h	ExonRegion	0	189.82	100.96	110.67	245.21	260.42	107.23	119.57	188.23	208.42	64.03	84.11	169.10	173.02	79.28	84.69	72.06	116.37	58.07	208.21	73.33	173.18	106.64	68.81	84.89	78.23	81.16	39.87	159.11	147.92
47	E3_De	KnownBoundary	0	67.60	62.73	4.19	291.18	65.88	105.32	115.35	35.63	127.96	34.79	75.99	94.91	93.62	49.10	32.69	83.61	68.52	60.11	137.12	56.07	120.45	46.19	74.42	64.30	45.58	50.12	39.91	113.36	132.95
48	ER3i	ExonRegion	0	27.94	21.66	4.98	31.78	14.89	25.08	19.49	5.35	38.92	12.80	32.30	31.56	30.77	19.48	10.39	28.59	26.15	18.55	60.91	8.87	35.90	14.17	19.48	17.90	13.88	15.44	15.39	19.80	28.38
49	ER3j	ExonRegion	0	4.29	3.28	0.00	7.31	9.96	5.50	0.00	0.00	0.00	1.44	4.76	3.71	2.60	6.35	0.00	0.00	5.01	2.73	9.05	0.00	4.28	0.00	1.81	1.08	0.00	0.00	5.49	0.00	0.00
50	ER3k	ExonRegion	0	2.28	2.67	0.00	0.46	4.98	1.37	0.00	0.00	0.00	1.35	1.34	1.86	0.32	2.78	0.00	0.00	2.82	0.68	0.57	0.00	1.69	0.00	1.13	0.00	0.00	0.00	1.37	0.00	0.00