Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LY86	Gene	0	311.30	128.06	90.98	318.59	52.34	151.01	654.33	195.52	214.09	431.81	131.28	239.28	185.86	1374.73	1470.71	896.92	617.31	314.94	607.80	1148.65	281.51	478.74	296.19	634.78	777.96	467.16	322.15	424.41	685.55
2	379953	Transcript	0	2.14	0.55	0.94	0.00	0.00	0.89	6.72	3.25	6.18	1.93	0.40	2.27	1.95	15.31	25.20	1.27	6.38	6.10	4.53	11.85	1.50	7.00	2.11	7.28	9.20	8.92	0.31	6.87	7.03
3	230568	Transcript	0	39.81	16.27	8.28	73.47	20.88	25.40	104.82	16.48	14.18	40.15	12.52	24.68	9.34	33.13	52.27	147.14	52.90	29.63	29.74	94.76	36.88	45.41	33.84	29.91	70.79	40.94	41.78	51.62	53.30
4	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.61	0.00	0.55	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	1.11	0.57	0.00	0.41	0.21	0.27	0.00	0.32	0.43	1.61	0.00	0.24	0.30
5	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	4.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	Ix	Intron	0	0.45	0.00	0.00	1.50	0.00	0.29	4.63	1.54	0.47	0.30	0.75	0.00	0.00	8.24	5.19	7.86	0.94	3.69	8.68	8.16	2.98	2.64	6.80	3.60	9.56	7.56	0.00	10.22	17.92
8	Ix_SR1	SilentIntronRegion	0	0.38	0.00	0.00	1.28	0.00	0.32	4.00	1.26	0.36	0.34	0.76	0.00	0.00	7.31	4.57	6.69	0.94	3.35	8.34	6.88	3.09	2.64	5.80	3.23	9.14	7.24	0.00	8.67	18.85
9	E2_Aa	NovelBoundary	0	208.45	47.21	19.46	598.33	12.82	36.79	461.21	46.28	66.39	126.27	37.55	58.94	70.47	149.27	154.67	661.03	73.67	79.63	178.03	511.00	97.91	182.66	183.55	97.08	273.38	99.82	130.21	288.64	207.09
10	Ix_AR1	ActiveIntronRegion	0	1.11	0.00	0.00	3.51	0.00	0.00	10.48	4.05	1.48	0.00	0.67	0.00	0.00	16.83	10.98	18.63	1.00	6.99	12.31	19.90	2.28	2.81	16.06	7.06	14.01	10.88	0.00	24.52	11.27
11	E2_Ab	NovelBoundary	0	83.76	48.28	27.06	213.54	34.78	50.30	217.87	31.65	41.11	88.80	26.48	65.00	37.77	82.36	128.56	339.04	167.47	55.48	32.37	191.04	81.70	101.17	60.48	54.01	164.99	85.96	88.21	114.40	189.00
12	ER2a	ExonRegion	0	39.81	16.27	8.28	73.47	20.88	25.40	104.82	16.48	14.18	40.15	12.52	24.68	9.34	33.13	52.27	147.14	52.90	29.63	29.74	94.76	36.88	45.41	33.84	29.91	70.79	40.94	41.78	51.62	53.30
13	ER2b	ExonRegion	0	233.90	119.87	89.69	527.69	92.50	140.03	465.63	155.87	139.38	386.86	150.02	282.22	191.52	985.24	1002.22	1175.56	666.08	322.06	587.39	854.63	294.65	458.45	281.42	361.75	526.25	486.68	424.48	377.96	922.35
14	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.11	5.39	0.00	0.00	0.00	2.68	0.00	3.82	6.87	4.62	0.00	0.00	2.97	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	0	219.96	144.07	18.44	44.86	6.93	112.57	558.30	145.12	165.05	233.52	35.37	139.64	203.23	819.75	546.93	860.08	302.25	187.25	388.44	878.51	186.31	443.05	199.36	485.40	483.72	219.68	97.95	223.53	379.26
16	Ix	Intron	0	1.71	1.02	0.87	1.42	0.00	2.14	0.88	3.39	3.84	6.24	2.38	3.43	2.25	10.87	9.19	14.99	30.21	7.69	6.65	1.54	6.33	1.30	1.59	3.96	2.12	5.41	1.17	2.73	5.08
17	Ix_SR1	SilentIntronRegion	0	1.72	1.02	0.87	1.43	0.00	2.15	0.89	3.39	3.84	6.24	2.39	3.44	2.25	10.89	9.20	15.02	30.25	7.70	6.66	1.55	6.34	1.30	1.59	3.96	2.12	5.42	1.17	2.74	5.09
18	Ix	Intron	0	1.64	1.66	0.44	0.77	0.06	1.39	0.68	2.06	2.80	5.21	1.19	3.60	1.32	8.54	6.74	12.48	12.81	5.70	4.40	1.29	6.16	0.74	0.98	2.24	2.26	2.89	0.96	2.65	3.73
19	Ix_SR1	SilentIntronRegion	0	1.68	2.67	0.43	1.29	0.23	1.80	0.24	2.22	1.89	4.85	1.38	3.15	0.56	7.14	2.92	12.29	13.79	7.47	3.88	0.42	4.83	0.90	1.01	2.01	1.38	2.61	0.30	2.21	2.50
20	Ix_AR1	ActiveIntronRegion	0	1.28	1.05	0.36	1.03	0.53	2.24	0.00	3.69	2.68	7.57	1.73	3.71	1.13	8.78	4.86	16.49	12.91	9.81	3.47	1.02	9.01	1.10	1.18	0.94	2.12	3.06	5.97	0.89	3.10
21	Ix_SR2	SilentIntronRegion	0	1.63	0.61	0.32	0.00	0.00	3.12	1.53	4.55	2.67	4.34	0.68	4.22	0.98	8.72	0.00	12.91	13.96	8.19	6.08	0.00	11.29	0.00	1.03	2.44	2.13	1.20	1.74	2.17	3.95
22	Ix_AR2	ActiveIntronRegion	0	1.45	0.00	0.08	0.00	0.00	2.24	0.35	3.03	1.78	9.93	0.56	6.62	0.93	11.69	0.00	16.14	12.28	9.32	3.85	0.88	6.51	0.86	0.29	1.04	2.37	2.10	0.00	1.85	3.37
23	Ix_SR3	SilentIntronRegion	0	2.10	1.09	0.32	0.00	0.00	1.21	0.43	3.85	1.91	9.30	0.93	4.65	0.58	10.38	1.14	14.32	13.09	9.45	1.96	0.45	5.17	0.41	1.16	0.48	2.97	3.30	0.82	1.60	2.59
24	Ix_AR3	ActiveIntronRegion	0	2.62	1.64	0.51	1.63	0.00	1.08	0.82	5.45	2.49	6.50	1.14	5.42	0.79	14.42	2.91	16.91	12.42	11.40	3.83	1.82	9.26	0.00	1.35	2.03	1.81	3.34	1.12	2.47	7.08
25	Ix_SR4	SilentIntronRegion	0	2.67	5.33	0.00	6.92	0.00	2.84	0.63	0.91	3.02	13.44	7.60	8.29	0.00	15.84	2.05	11.86	18.64	13.03	9.25	0.85	11.30	0.00	1.98	2.06	6.55	5.27	0.00	4.29	5.63
26	Ix_AR4	ActiveIntronRegion	0	1.94	5.18	0.26	2.66	0.00	4.31	0.22	0.75	5.89	8.40	2.51	5.31	1.59	12.57	12.18	19.75	21.94	7.49	7.13	0.47	12.03	0.62	1.55	2.80	2.65	2.04	1.18	2.66	4.30
27	Ix_SR5	SilentIntronRegion	0	2.50	3.26	1.08	1.61	0.00	2.94	1.62	4.79	8.54	10.48	2.57	8.05	4.19	18.84	22.48	26.82	35.04	11.25	7.15	2.01	10.86	1.65	2.30	7.29	6.46	6.16	1.96	5.49	10.53
28	Ix_AR5	ActiveIntronRegion	0	0.00	0.00	0.27	0.00	0.00	0.22	0.33	1.41	1.66	4.32	1.34	3.61	0.01	6.05	3.33	5.93	7.07	4.33	4.55	0.30	6.22	0.35	0.29	1.53	1.32	3.83	0.00	2.22	2.91
29	Ix_SR6	SilentIntronRegion	0	0.00	3.17	0.00	1.97	0.00	2.33	2.13	1.46	1.07	2.95	0.54	3.63	1.38	7.13	1.78	8.08	7.79	5.18	4.00	1.10	9.74	0.51	0.00	1.20	1.93	6.49	0.00	1.34	5.66
30	Ix_AR6	ActiveIntronRegion	0	3.14	1.84	0.44	4.14	0.00	2.78	0.52	0.48	0.61	2.80	2.70	3.15	0.64	6.45	2.63	12.42	6.76	5.72	5.50	3.11	4.74	0.47	0.00	0.00	0.96	3.69	1.43	3.07	3.13
31	Ix_AR7	ActiveIntronRegion	0	2.51	1.09	0.36	0.00	0.00	0.83	0.14	1.19	1.57	4.28	0.77	3.51	0.47	4.89	3.51	10.78	8.09	4.50	3.68	1.53	4.08	0.39	0.26	1.55	2.35	2.27	1.19	1.76	1.15
32	Ix_SR7	SilentIntronRegion	0	0.95	0.21	0.22	0.43	0.00	0.71	0.00	1.52	1.10	3.68	0.92	2.87	1.13	3.60	3.90	10.33	3.81	1.77	3.43	0.53	3.91	0.12	1.06	0.28	0.92	1.70	0.48	2.62	0.73
33	Ix_AR8	ActiveIntronRegion	0	1.85	0.81	1.86	0.11	0.00	0.34	0.50	3.29	2.39	6.20	2.37	2.84	1.60	7.14	4.61	7.80	8.58	5.47	3.44	0.00	8.49	1.09	1.29	1.07	0.85	1.23	1.34	3.26	3.49
34	Ix_SR8	SilentIntronRegion	0	1.20	1.02	0.39	0.00	0.13	0.68	0.18	1.02	0.39	3.99	0.70	1.90	0.36	4.19	1.96	7.93	6.00	2.68	2.89	1.39	4.87	0.70	0.49	0.97	0.75	1.88	0.00	1.84	1.03
35	Ix_AR9	ActiveIntronRegion	0	0.65	0.61	0.69	0.00	0.18	0.78	0.38	0.14	0.63	1.90	0.89	1.27	0.17	4.37	2.67	6.12	6.14	2.38	1.51	1.11	5.80	0.85	0.02	0.20	0.81	1.87	0.00	2.31	3.08
36	Ix_SR9	SilentIntronRegion	0	1.16	1.01	0.17	0.24	0.00	0.39	0.07	0.68	1.28	2.47	0.14	1.94	0.55	3.02	3.27	4.84	4.85	1.39	2.80	0.37	3.58	0.25	0.42	0.64	0.62	1.21	0.80	1.50	1.59
37	Ix_AR10	ActiveIntronRegion	0	5.17	10.79	0.96	2.16	0.00	3.73	21.90	5.92	8.38	5.60	4.67	5.36	10.71	70.04	44.24	53.01	29.54	19.17	34.39	44.67	14.99	8.61	7.08	10.97	16.59	28.84	5.53	16.44	27.30
38	Ix_SR10	SilentIntronRegion	0	1.29	0.11	0.21	0.00	0.00	0.06	0.08	0.24	0.60	1.40	0.15	0.62	0.54	2.41	0.97	3.76	2.50	1.69	2.49	0.23	2.74	0.22	0.15	0.55	0.79	1.24	0.30	2.11	0.34
39	Ix_AR11	ActiveIntronRegion	0	0.38	0.00	0.00	0.00	0.00	0.23	0.17	0.16	0.00	2.05	0.29	0.66	0.00	3.71	1.69	5.55	1.27	2.52	4.42	0.00	1.05	0.30	0.52	0.11	0.00	0.64	0.15	0.55	0.00
40	Ix_SR11	SilentIntronRegion	0	1.51	0.00	0.00	0.00	0.00	0.07	0.00	0.00	1.03	2.57	0.39	0.74	0.14	2.96	1.00	3.28	1.37	1.43	2.94	0.30	4.28	0.00	0.05	0.51	0.23	0.08	0.00	1.04	0.00
41	I2_AR1	ActiveIntronRegion	0	0.00	2.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.67	0.00	0.06	0.00	2.25	0.00	0.00	0.23	0.61	6.03	0.00	3.59	0.00	0.00	0.00	0.00	0.00	0.00	0.64	0.00
42	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.07	0.00	0.00	0.00	3.97	16.74	6.58	1.33	4.62	8.09	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00
43	ER3a	ExonRegion	0	481.64	289.03	25.19	109.10	12.60	303.11	978.87	305.17	291.37	858.13	252.15	375.20	284.95	1913.97	1870.86	2157.69	753.64	590.79	1188.16	2033.73	596.92	840.37	410.50	1014.67	1401.50	641.12	386.41	486.59	1103.63
44	E3_Da	NovelBoundary	0	2.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.35	0.00	7.64	7.57	16.68	2.23	0.00	8.09	0.00	13.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.75
45	E3a_E4a	KnownJunction	0	411.07	294.44	62.96	160.47	12.67	230.21	1093.55	175.23	292.71	1057.84	418.49	493.82	324.40	2442.74	3458.00	2275.38	1172.85	768.78	1617.82	1892.74	416.75	588.95	590.45	1082.66	1374.63	874.16	839.94	656.31	1698.18
46	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.23	0.00	1.19	1.84	0.00	0.00	0.00	7.33	50.03	10.94	2.48	0.00	0.00	0.00	0.00	2.19	0.00	2.99	1.93	10.26	11.78	0.00	0.00
47	I3	Intron	0	3.89	0.26	0.27	1.45	0.00	0.39	0.24	0.00	0.50	1.75	0.58	1.02	0.10	8.02	23.34	17.70	3.86	5.16	13.93	1.27	3.46	0.15	0.29	1.39	0.87	4.19	0.15	1.51	0.16
48	I3_AR1	ActiveIntronRegion	0	1.12	0.00	0.00	0.00	0.00	0.59	0.43	0.00	0.24	1.42	0.00	0.60	0.00	5.24	9.61	13.01	2.35	5.32	6.53	1.33	2.92	0.00	0.19	1.19	0.60	0.91	0.00	0.77	0.00
49	I3_SR1	SilentIntronRegion	0	5.58	0.42	0.43	2.33	0.00	0.27	0.13	0.00	0.65	1.95	0.93	1.28	0.17	9.71	31.70	20.58	4.78	5.08	18.44	1.24	3.79	0.23	0.35	1.52	1.03	6.18	0.24	1.97	0.26
50	E4_Aa	NovelBoundary	0	10.38	3.88	0.00	0.00	0.00	0.00	0.00	0.00	1.71	2.04	0.00	0.00	0.00	5.78	45.64	10.25	5.18	9.25	40.46	0.00	5.86	0.00	0.00	6.10	1.86	1.80	0.00	4.58	0.00
51	ER4a	ExonRegion	0	401.25	183.65	165.73	523.28	85.81	217.43	909.92	195.08	208.03	611.14	271.81	393.07	300.29	2160.85	2225.57	1192.72	1126.57	463.22	929.13	1643.55	341.32	448.38	443.33	965.58	1003.45	692.08	759.90	749.38	1245.63
52	E4_Da	NovelBoundary	0	4.60	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	1.88	0.00	1.87	0.00	22.02	19.73	24.02	7.72	4.62	8.09	3.97	15.48	0.00	0.00	0.00	1.93	0.00	0.00	1.71	1.52
53	E4a_E5a	KnownJunction	0	485.10	173.64	265.04	935.89	137.20	271.45	1055.50	258.98	253.94	532.63	223.88	330.93	239.06	1928.75	2343.00	1163.78	944.89	497.41	1003.02	1947.90	417.19	467.84	280.43	1094.92	1053.28	478.19	422.93	483.15	792.92
54	E4a_E6a	NovelJunction	0	8.26	0.00	0.00	30.20	0.00	0.00	5.66	9.41	1.28	3.91	0.00	5.51	5.03	24.59	58.00	17.90	11.95	0.00	24.28	11.33	9.79	4.28	1.82	8.43	12.24	4.16	4.08	8.58	8.39
55	I4	Intron	0	1.61	0.56	0.21	0.83	0.04	0.45	0.27	0.14	0.55	2.41	0.25	1.02	0.21	8.05	3.41	8.23	3.65	2.92	4.70	0.89	2.62	0.34	0.25	1.05	1.05	1.09	0.25	2.10	0.49
56	I4_SR1	SilentIntronRegion	0	1.79	0.53	0.35	1.27	0.07	0.53	0.37	0.17	0.39	2.22	0.27	1.02	0.11	8.59	3.10	8.17	3.46	3.42	5.84	1.22	2.88	0.22	0.33	1.12	0.84	0.88	0.20	1.75	0.64
57	I4_AR1	ActiveIntronRegion	0	0.89	0.88	0.11	0.00	0.00	0.75	0.00	0.00	0.55	3.93	0.00	1.52	0.01	8.55	1.26	5.44	3.10	1.58	2.18	0.00	3.60	0.74	0.00	0.88	0.97	1.01	1.00	2.99	1.16
58	I4_SR2	SilentIntronRegion	0	1.39	0.53	0.05	0.35	0.00	0.31	0.16	0.09	0.68	2.54	0.25	0.96	0.34	7.31	3.73	8.36	3.81	2.33	3.34	0.49	2.18	0.48	0.18	0.93	1.30	1.37	0.09	2.51	0.24
59	I4_AR2	ActiveIntronRegion	0	2.79	2.09	0.00	0.00	0.00	0.89	0.00	1.09	3.46	2.81	0.39	1.80	0.00	8.94	10.95	12.77	8.17	4.59	7.84	2.43	4.40	0.00	0.00	2.01	1.86	1.02	5.95	1.06	0.44
60	E5_Aa	NovelBoundary	0	0.00	3.88	0.00	0.00	0.00	1.96	0.00	2.09	0.00	2.00	0.00	2.77	0.00	15.11	16.74	22.34	17.89	4.62	0.00	0.00	7.74	0.00	0.00	2.57	1.70	0.00	0.00	0.00	0.00
61	ER5a	ExonRegion	0	599.57	286.65	221.26	1085.03	159.50	361.67	1446.43	337.68	291.14	857.76	328.69	437.97	297.99	2660.51	2711.75	1608.64	1261.66	588.88	1338.11	2331.74	596.15	675.59	461.21	1333.91	1533.03	663.76	669.86	642.73	1039.40
62	E5_Da	NovelBoundary	0	2.24	0.00	0.00	0.00	0.00	1.73	0.00	0.00	1.55	6.99	6.26	0.00	0.00	22.91	49.63	31.82	20.28	19.01	32.37	4.13	1.56	0.00	0.00	5.26	1.48	0.00	0.00	2.29	3.66
63	E5a_E6a	KnownJunction	0	585.84	367.44	149.59	1033.81	157.69	377.58	1570.72	337.61	363.09	1048.05	364.90	446.59	344.08	2806.80	3679.44	2014.44	1380.27	660.77	1909.82	2261.16	753.23	692.75	560.17	1480.07	1641.79	799.02	800.88	794.03	1300.83
64	I5	Intron	0	3.12	2.37	0.19	1.22	0.09	1.48	0.80	0.45	1.96	7.29	0.77	4.01	0.84	30.90	15.93	27.11	33.11	5.12	3.08	3.08	3.97	1.53	1.13	5.57	5.49	5.44	1.07	6.26	3.19
65	I5_SR1	SilentIntronRegion	0	3.29	2.45	0.20	1.29	0.10	1.54	0.84	0.40	2.07	7.49	0.81	4.17	0.89	32.05	16.43	28.16	34.51	5.14	3.15	3.10	4.15	1.56	1.19	5.83	5.74	5.64	1.13	6.56	3.32
66	E6_Aa	NovelBoundary	0	3.01	9.02	2.27	0.00	0.00	3.34	2.12	0.00	4.66	5.99	0.00	4.85	0.00	46.62	42.06	61.66	46.64	0.00	8.09	0.00	1.68	0.00	0.00	12.98	3.56	9.14	8.85	4.58	4.16
67	ER6a	ExonRegion	0	501.69	169.65	142.33	395.89	65.93	204.11	1027.17	332.83	395.77	617.56	144.46	326.47	271.73	2164.13	2410.62	1117.06	857.36	442.02	823.14	1742.78	391.79	796.78	461.27	1002.57	1231.61	722.70	369.36	658.25	880.90
68	ER6b	ExonRegion	0	6.43	1.64	2.81	0.00	0.00	2.06	20.16	9.21	18.54	5.78	1.19	6.80	5.85	44.45	75.61	3.80	18.03	17.74	13.58	35.13	4.28	20.73	6.33	21.51	27.16	25.15	0.92	20.38	20.80
69	IG34_AR5	ActiveIntergenicRegion	0	0.57	0.00	0.00	6.17	0.00	0.28	0.00	0.00	0.37	0.00	0.43	0.00	1.59	0.00	0.60	0.00	0.22	0.00	0.00	0.00	0.19	0.00	0.71	0.94	0.00	0.00	1.57	0.00	2.80