Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PAK1IP1	Gene	0	375.07	164.70	69.07	421.68	217.68	306.92	339.76	309.92	151.19	181.43	255.30	148.93	260.62	106.08	112.97	125.39	125.53	106.01	400.17	118.51	554.24	188.07	155.19	120.24	136.80	86.30	187.97	63.74	102.66
2	379568	Transcript	0	531.89	229.22	85.56	607.87	304.60	383.52	494.15	415.39	211.44	276.94	335.64	197.77	350.47	144.78	151.51	167.31	171.60	131.99	561.72	156.37	712.57	258.50	231.30	165.90	204.21	113.60	255.01	90.00	132.94
3	IG21_SR1	SilentIntergenicRegion	0	1.88	0.00	0.00	0.00	4.29	0.00	0.00	0.00	1.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.42	2.42	0.00	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	1	104.14	16.70	39.23	233.75	155.25	38.95	79.30	124.94	17.81	38.92	37.32	46.81	56.98	22.10	11.98	31.64	43.08	36.38	62.69	26.69	98.09	86.25	54.52	11.58	31.33	38.73	33.84	26.92	22.76
5	E1a_E2a	KnownJunction	0	33.62	0.00	19.31	56.30	52.61	8.25	51.26	41.41	2.65	17.50	6.86	6.84	17.42	10.44	0.00	14.84	10.74	0.00	40.46	14.06	17.85	37.63	12.80	3.05	5.23	11.59	17.29	9.66	5.81
6	E1a_E3a	NovelJunction	0	2.89	0.00	0.00	0.00	6.19	1.96	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.86	0.00	0.00	1.89	0.00
7	ER2a	ExonRegion	0	499.19	104.86	30.60	164.74	77.23	215.39	317.26	520.25	103.59	186.48	210.33	172.94	255.08	123.95	58.10	129.86	146.20	130.78	312.73	147.14	430.67	321.91	179.79	95.98	161.53	122.92	119.43	75.33	96.27
8	E2a_E3a	KnownJunction	0	517.66	90.55	45.37	309.95	153.41	178.49	306.67	494.32	112.55	210.67	396.03	277.46	312.49	162.50	134.54	124.92	252.73	107.11	339.88	189.22	309.17	323.99	341.05	95.82	175.22	161.61	414.63	170.56	160.68
9	I2_AR1	ActiveIntronRegion	0	2.44	0.45	0.43	0.00	0.00	1.81	0.00	1.02	2.04	0.80	0.17	0.17	0.18	0.21	2.69	0.69	3.19	0.59	1.78	0.00	2.40	0.00	0.00	1.20	0.46	0.00	0.00	1.59	0.19
10	E3_Aa	NovelBoundary	0	4.66	0.00	0.00	0.00	0.00	1.69	4.86	2.24	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER3a	ExonRegion	0	645.10	194.19	156.23	567.37	435.29	306.51	384.21	522.50	140.85	227.73	290.27	221.42	339.58	151.48	79.70	138.71	192.17	109.73	433.62	189.20	547.27	318.27	236.12	155.97	208.62	103.21	241.14	104.66	111.27
12	E3_Da	NovelBoundary	0	22.12	0.00	3.66	10.78	0.00	5.10	5.55	10.95	3.20	7.67	0.00	3.64	1.27	3.17	0.00	0.00	3.15	0.00	24.28	0.00	11.03	0.00	0.00	3.05	3.86	0.00	0.00	0.00	3.24
13	E3a_E4a	KnownJunction	0	638.22	197.68	165.19	879.38	461.27	331.88	451.83	492.48	151.93	258.53	284.20	167.35	282.08	169.45	87.50	146.88	165.42	120.98	461.05	161.43	633.14	343.34	184.39	157.67	196.09	82.48	180.25	55.00	82.60
14	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78	0.00	0.00	0.00	0.00
15	E3a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.73	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	I3	Intron	0	8.75	0.00	0.00	0.00	0.00	2.80	0.00	0.00	3.06	0.98	0.81	0.00	0.00	1.23	0.00	1.69	0.00	3.93	8.69	0.00	6.79	0.00	0.00	0.00	0.00	0.00	1.25	1.11	0.00
17	I3_AR1	ActiveIntronRegion	0	8.96	0.00	0.00	0.00	0.00	2.88	0.00	0.00	3.14	1.01	0.83	0.00	0.00	1.27	0.00	1.73	0.00	4.04	8.93	0.00	6.96	0.00	0.00	0.00	0.00	0.00	1.28	1.14	0.00
18	E4_Aa	NovelBoundary	0	25.48	0.00	0.00	8.41	0.00	7.21	2.46	9.51	1.31	3.28	9.36	0.00	0.00	2.48	16.74	0.00	9.03	4.62	0.00	4.13	1.56	2.48	0.00	2.81	1.93	6.05	0.00	0.00	1.58
19	ER4a	ExonRegion	0	600.54	184.96	97.32	781.48	325.99	310.66	387.27	477.40	153.91	254.26	276.47	176.35	288.94	162.06	129.93	186.57	153.68	151.81	453.91	176.70	534.95	334.97	209.16	122.07	198.07	80.28	128.74	42.77	104.69
20	E4_Da	NovelBoundary	0	23.12	9.31	2.82	0.00	7.22	6.91	2.46	0.00	8.01	4.03	0.00	1.42	0.00	4.12	0.00	6.73	5.63	9.25	16.18	0.00	9.23	0.00	0.00	3.05	4.96	0.00	0.00	1.80	3.80
21	E4a_E5a	KnownJunction	0	526.33	270.49	49.83	756.86	399.97	271.45	399.99	317.66	123.91	241.15	259.53	174.06	285.42	127.67	183.97	176.33	168.46	158.87	663.13	155.39	606.91	260.05	213.89	119.39	187.38	51.97	160.22	63.98	97.95
22	E4a_E6a	NovelJunction	0	4.95	0.00	0.00	9.27	14.74	0.00	2.40	2.04	1.55	0.00	0.00	0.00	5.86	1.88	0.00	2.91	0.90	4.62	40.46	0.00	9.39	0.00	2.46	8.97	0.00	0.00	0.00	1.84	0.00
23	E4a_E8a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	0.00	0.00	0.00	1.62	1.37	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	I4	Intron	0	8.69	1.81	0.56	0.81	1.65	5.88	2.04	2.28	4.16	4.71	2.01	1.60	0.22	2.24	1.56	4.39	6.05	3.90	9.35	1.15	8.99	0.61	0.00	1.45	1.61	0.35	0.00	1.65	0.38
25	I4_SR1	SilentIntronRegion	0	7.89	2.13	0.00	0.00	0.00	3.22	4.01	4.32	1.49	4.78	1.72	2.25	0.00	2.40	1.53	5.51	4.94	3.83	9.52	3.39	8.03	1.19	0.00	0.71	2.39	0.52	0.00	4.32	0.00
26	I4_AR1	ActiveIntronRegion	0	9.16	1.66	0.86	1.23	2.52	7.30	1.04	1.24	5.57	4.71	2.18	1.27	0.33	2.18	1.58	3.83	6.66	3.97	9.33	0.00	9.55	0.31	0.00	1.85	1.20	0.27	0.00	0.28	0.57
27	E5_Aa	NovelBoundary	0	5.19	4.85	1.25	10.78	0.00	7.33	7.78	0.00	13.98	3.36	4.81	1.11	1.18	6.05	8.37	3.82	7.70	4.62	16.18	0.00	13.36	0.00	2.41	0.00	1.74	0.00	0.00	0.00	1.49
28	ER5a	ExonRegion	0	589.13	282.19	65.29	742.99	369.10	469.31	484.12	385.48	175.42	301.48	381.85	203.99	371.52	147.22	141.60	218.50	173.47	132.65	617.82	168.27	856.61	266.81	238.01	166.53	225.97	70.87	251.40	77.23	105.98
29	E5_Da	NovelBoundary	0	14.27	0.00	0.00	0.00	0.00	3.91	2.35	2.04	0.00	7.35	1.42	0.00	0.00	3.48	0.00	0.00	2.66	0.00	16.18	0.00	11.43	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00
30	E5a_E6a	KnownJunction	0	584.72	331.67	69.59	841.63	374.77	511.09	555.44	374.64	221.12	344.61	419.19	240.84	374.90	140.65	179.99	241.97	161.71	120.72	752.15	205.09	960.76	228.06	277.97	169.82	237.27	76.95	325.12	71.89	113.34
31	I5	Intron	0	4.70	2.65	0.00	0.00	0.67	3.58	0.28	0.76	1.62	0.79	0.16	0.59	0.27	1.55	0.63	1.70	2.05	2.73	7.88	0.76	5.08	0.00	0.00	1.18	0.59	0.00	0.00	0.22	0.18
32	I5_SR1	SilentIntronRegion	0	6.40	2.62	0.00	0.00	0.00	1.86	0.00	0.50	0.30	0.00	0.32	0.67	0.53	0.61	0.00	2.02	0.40	2.70	6.93	1.50	5.80	0.00	0.00	0.58	0.78	0.00	0.00	0.44	0.36
33	I5_SR2	SilentIntronRegion	0	2.96	1.45	0.00	0.00	3.89	3.60	0.00	0.00	3.66	1.07	0.00	0.00	0.00	1.18	0.00	0.81	1.04	3.17	0.00	0.00	3.65	0.00	0.00	0.22	0.00	0.00	0.00	0.00	0.00
34	I5_AR1	ActiveIntronRegion	0	3.98	3.28	0.00	0.00	4.98	6.28	0.00	0.00	4.98	1.44	0.00	0.88	0.00	3.63	0.00	2.53	6.01	8.19	0.00	0.00	9.98	0.00	0.00	2.15	0.00	0.00	0.00	0.00	0.00
35	I5_SR3	SilentIntronRegion	0	2.97	3.18	0.00	0.00	0.16	6.06	0.82	1.50	2.61	1.85	0.00	0.70	0.00	3.01	1.88	1.56	4.73	2.34	13.03	0.00	4.38	0.00	0.00	2.43	0.58	0.00	0.00	0.00	0.00
36	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	9.92	0.00	10.78	5.38	0.00	5.45	0.00	0.00	1.87	0.00	3.37	0.00	0.00	5.04	4.62	16.18	3.89	14.60	4.76	0.00	0.00	0.00	2.19	0.00	0.00	5.38
37	ER6a	ExonRegion	0	512.51	304.15	95.08	659.89	354.07	459.18	602.50	321.55	226.31	330.25	440.31	263.31	412.01	158.71	137.94	196.08	223.13	149.90	631.91	179.00	893.41	219.09	286.44	165.49	211.04	103.11	332.76	91.63	138.42
38	E6_Da	NovelBoundary	0	0.00	4.65	0.00	0.00	0.00	7.25	0.00	0.00	0.00	0.00	1.61	1.39	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	1.93	0.00
39	E6a_E7a	KnownJunction	0	501.14	367.35	90.79	584.31	306.97	550.80	1049.38	223.25	344.48	542.22	441.02	239.36	584.28	196.17	290.41	244.49	244.56	134.21	969.75	146.13	1022.09	188.44	355.53	171.37	255.12	140.59	253.85	117.32	229.91
40	I6	Intron	0	0.00	1.75	0.00	8.25	2.65	0.75	0.00	0.00	0.00	1.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.20	0.00	3.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	I6_SR1	SilentIntronRegion	0	0.00	1.79	0.00	8.43	2.71	0.76	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.31	0.00	3.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E7_Aa	NovelBoundary	0	3.01	0.00	1.54	21.35	0.00	1.92	0.00	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.67	0.00	16.18	0.00	1.60	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
43	ER7a	ExonRegion	0	738.23	440.48	127.23	543.52	230.37	582.74	672.03	510.19	382.49	358.00	403.60	270.20	511.93	197.64	191.45	225.75	218.37	161.88	701.23	213.61	1049.98	337.09	281.77	289.24	270.41	134.45	215.92	90.18	186.23
44	E7_Da	NovelBoundary	0	0.00	0.00	1.54	10.35	6.19	0.00	0.00	0.00	0.00	2.04	3.89	2.53	0.00	0.00	0.00	0.00	1.91	0.00	8.09	0.00	3.17	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00
45	E7a_E8a	KnownJunction	0	624.54	301.22	94.40	616.66	244.19	460.60	600.35	465.76	385.53	318.93	390.62	271.89	398.25	177.34	179.59	176.02	187.19	191.87	800.26	177.14	814.64	229.72	240.54	231.13	215.45	153.16	271.40	95.57	153.58
46	E7a_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	14.74	0.00	2.35	0.00	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35
47	I7	Intron	0	3.09	1.77	0.57	2.13	0.21	3.14	1.28	0.39	1.12	1.28	1.36	0.68	0.66	1.13	0.39	3.11	2.28	1.89	3.52	0.90	4.65	0.08	0.08	1.09	0.48	0.07	0.93	0.21	0.28
48	I7_SR1	SilentIntronRegion	0	3.20	1.84	0.59	2.16	0.21	3.18	1.33	0.40	1.15	1.27	1.38	0.67	0.68	1.17	0.40	3.12	2.28	1.93	3.62	0.85	4.79	0.05	0.08	1.10	0.50	0.07	0.96	0.21	0.29
49	I7_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	1.19	0.00	2.45	0.00	0.00	0.24	2.03	0.96	1.17	0.00	0.00	0.00	3.21	2.30	0.74	0.86	2.51	0.73	0.93	0.00	1.10	0.00	0.00	0.00	0.00	0.00
50	E8_Aa	NovelBoundary	0	11.33	4.56	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	1.58	0.00	0.00	2.24	8.37	6.58	2.18	9.25	0.00	0.00	4.09	0.00	0.00	3.05	0.00	2.06	0.00	0.00	0.00
51	ER8a	ExonRegion	0	747.32	318.87	127.57	769.51	412.27	543.44	711.80	612.99	387.06	410.91	479.35	269.67	509.45	200.81	217.92	193.63	253.70	168.88	707.57	188.48	984.02	376.03	320.79	298.19	345.04	188.05	424.81	143.87	225.46
52	E8_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	1.49	3.36	0.00	3.43	0.00	1.99	0.00	10.25	2.68	5.39	0.00	3.80	3.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E8a_E9a	KnownJunction	0	910.03	388.58	122.11	1382.80	813.05	815.35	1090.06	766.25	567.82	613.60	621.78	285.78	675.64	198.63	343.83	244.64	268.56	219.74	1059.66	217.91	1498.00	424.57	475.75	410.15	506.56	276.75	579.22	242.99	278.63
54	I8	Intron	0	3.92	4.65	0.61	2.10	1.79	4.12	1.03	0.81	3.61	1.69	0.44	1.04	0.10	2.55	3.57	5.34	2.95	1.43	6.31	0.60	5.43	0.26	0.00	1.73	0.73	0.23	0.00	0.00	1.27
55	I8_SR1	SilentIntronRegion	0	3.93	4.67	0.61	2.11	1.79	4.14	1.04	0.81	3.62	1.70	0.44	1.04	0.10	2.56	3.58	5.37	2.96	1.44	6.34	0.61	5.45	0.26	0.00	1.73	0.74	0.23	0.00	0.00	1.28
56	E9_Aa	NovelBoundary	0	2.42	0.00	0.00	10.78	0.00	9.52	0.00	0.00	4.14	6.67	5.73	3.10	0.00	3.30	15.15	18.05	5.24	0.00	16.18	0.00	5.66	0.00	0.00	5.92	0.00	0.00	0.00	0.00	0.00
57	ER9a	ExonRegion	0	582.28	228.72	98.79	663.33	288.93	495.07	554.67	575.09	238.50	294.47	418.53	220.62	428.68	177.76	184.32	193.23	182.08	158.34	585.40	159.60	910.01	277.08	233.88	208.54	224.32	175.22	313.95	121.90	190.26
58	E9a_E10a	KnownJunction	0	556.17	198.65	88.42	684.82	198.66	411.88	442.84	524.58	149.58	205.60	378.60	152.92	353.76	153.72	180.98	191.63	141.67	162.34	671.67	166.89	831.21	266.62	174.93	185.73	158.47	131.88	392.36	70.68	132.09
59	I9	Intron	0	0.00	2.04	0.00	0.00	0.00	3.05	0.00	0.00	0.36	1.83	1.51	0.58	0.00	0.00	0.00	3.14	0.95	1.83	6.07	0.00	4.07	0.00	0.00	0.68	0.00	0.00	0.00	0.00	0.43
60	I9_SR1	SilentIntronRegion	0	0.00	2.07	0.00	0.00	0.00	3.09	0.00	0.00	0.36	1.85	1.53	0.59	0.00	0.00	0.00	3.18	0.96	1.85	6.15	0.00	4.12	0.00	0.00	0.69	0.00	0.00	0.00	0.00	0.43
61	E10_Aa	NovelBoundary	0	0.00	3.49	0.00	0.00	0.00	1.69	0.00	0.00	0.00	1.80	2.75	0.00	0.00	0.00	0.00	0.00	1.37	5.39	0.00	0.00	5.05	3.99	1.97	5.20	0.00	0.00	0.00	2.29	6.01
62	ER10a	ExonRegion	0	195.01	133.86	43.32	310.20	133.95	325.88	247.95	141.62	131.90	106.56	241.28	95.87	200.54	72.48	144.86	103.20	73.53	91.54	407.80	89.09	540.07	71.48	77.43	94.34	66.89	54.57	188.76	37.93	89.96
63	IG22_AR1	ActiveIntergenicRegion	0	0.18	0.00	0.00	0.00	0.00	0.96	0.58	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.70	0.00	0.00	0.00	0.94	0.00	0.00	1.42	0.00	4.98	1.58	0.00	0.00