Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TTRAP	Gene	0	321.57	297.89	121.17	395.78	159.45	379.38	369.65	196.38	165.65	253.26	285.78	236.97	272.96	278.87	397.07	304.09	297.02	161.24	560.37	316.06	396.54	181.49	181.72	217.04	237.57	197.48	421.89	171.36	236.37
2	378198	Transcript	0	221.51	69.33	24.12	116.96	35.64	232.52	301.75	127.70	48.63	200.09	200.92	184.06	203.06	190.66	110.54	220.61	277.33	106.77	182.51	152.00	189.25	177.12	159.41	81.80	135.17	545.50	251.95	349.63	399.51
3	478507	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	480495	Transcript	0	30.37	10.75	4.39	16.95	2.72	11.79	4.67	1.21	5.58	13.13	6.28	2.25	1.51	15.74	1.61	11.18	17.67	17.35	33.57	13.33	15.80	5.46	4.75	6.27	8.39	0.61	1.71	4.68	1.62
5	341060	Transcript	0	0.00	0.00	1.25	0.00	0.00	3.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	478285	Transcript	0	6.65	6.73	1.47	2.44	2.08	9.53	3.00	1.42	3.02	7.25	3.49	2.31	1.24	7.26	5.31	12.50	12.83	3.91	4.22	1.82	6.24	1.42	1.46	1.86	3.21	2.78	2.52	3.05	2.17
7	ER1a	ExonRegion	0	7.98	0.00	2.83	24.12	1.48	3.95	3.84	3.49	1.88	1.94	1.32	0.24	6.61	2.94	2.64	1.41	6.52	6.56	3.66	2.49	3.02	9.50	6.16	0.29	1.48	2.57	6.45	5.28	10.13
8	E1_Ab	KnownBoundary	0	6.02	0.00	7.82	27.82	7.37	5.14	0.00	5.08	4.60	3.32	2.85	1.51	10.95	9.88	0.00	3.06	15.19	14.64	8.09	3.23	9.27	9.92	12.02	4.67	3.86	3.86	22.36	7.59	15.81
9	ER1b	ExonRegion	0	251.99	75.51	118.15	454.70	194.83	167.89	259.84	211.60	49.96	144.63	97.73	173.64	174.92	157.51	92.99	191.30	246.82	132.00	109.12	137.18	201.98	182.11	163.41	56.51	120.87	643.60	216.63	372.17	321.86
10	E1_Ac	KnownBoundary	0	594.63	147.95	207.49	657.21	369.02	341.05	652.48	296.51	113.25	273.91	163.14	283.19	425.22	323.53	201.71	482.32	372.84	200.61	193.99	219.32	283.86	456.03	227.34	135.66	234.47	961.92	204.11	554.90	842.44
11	ER1c	ExonRegion	0	406.46	73.80	215.00	285.61	147.30	161.32	187.40	298.07	43.06	110.48	86.04	148.36	202.71	255.08	114.56	207.35	201.19	125.36	192.81	223.74	138.57	379.66	110.18	127.70	128.07	306.50	116.14	156.97	409.03
12	E1_Da	NovelBoundary	0	11.50	0.00	16.05	56.08	7.37	3.57	15.91	7.02	5.73	2.04	0.00	1.54	4.78	15.49	0.00	3.82	9.07	13.87	8.09	8.02	0.00	22.85	4.88	0.00	8.71	20.68	0.00	12.49	49.69
13	E1a_E2a	KnownJunction	0	506.15	94.04	47.31	250.42	72.21	158.61	143.95	463.72	44.95	83.05	100.12	136.50	134.35	291.29	85.71	118.04	115.92	188.66	194.22	439.22	213.39	376.44	80.77	149.48	165.29	168.09	121.66	74.14	132.22
14	I1	Intron	0	5.08	1.91	0.00	4.25	0.00	1.63	5.98	1.09	0.67	3.42	0.00	0.00	0.00	1.88	5.99	5.89	2.66	8.00	7.58	5.62	1.69	4.28	1.07	2.55	1.70	1.86	0.00	1.93	1.59
15	I1_AR1	ActiveIntronRegion	0	5.21	1.96	0.00	4.35	0.00	1.67	6.12	1.12	0.68	3.51	0.00	0.00	0.00	1.92	6.13	6.03	2.72	8.19	7.76	5.76	1.73	4.38	1.10	2.61	1.72	1.91	0.00	1.98	1.63
16	E2_Aa	NovelBoundary	0	27.37	25.30	16.92	18.12	57.62	5.26	18.37	23.29	6.33	8.87	14.87	6.87	6.81	13.16	0.00	13.39	30.43	13.87	0.00	7.03	9.39	10.70	2.07	3.05	5.46	9.44	15.31	4.36	4.09
17	E2_Ab	NovelBoundary	0	413.55	230.26	42.50	251.07	72.65	269.34	236.47	388.42	81.83	200.33	70.32	173.73	206.35	274.81	169.62	312.34	279.14	155.66	274.92	310.95	380.33	329.14	168.83	103.36	189.62	440.00	117.98	234.59	231.89
18	ER2a	ExonRegion	0	556.90	188.49	63.10	248.63	75.91	254.51	226.24	525.85	66.45	173.73	108.36	181.88	216.01	330.17	134.68	268.86	238.36	208.20	341.59	429.50	337.17	430.00	150.34	154.99	219.64	363.65	143.38	194.05	222.80
19	ER2b	ExonRegion	0	624.11	227.62	66.91	255.04	59.86	424.75	599.61	416.76	110.14	432.33	345.20	360.81	397.06	433.82	266.59	485.00	567.33	291.60	354.27	394.88	454.18	484.72	355.84	177.35	300.40	911.06	360.53	551.73	612.65
20	E2_Da	KnownBoundary	0	18.64	0.00	3.39	10.78	0.00	7.67	5.55	4.28	1.40	12.82	0.00	0.00	0.00	6.49	0.00	16.98	12.79	33.91	16.18	4.13	21.98	2.48	0.00	3.05	0.00	7.68	0.00	7.82	0.00
21	E2a_E3b	KnownJunction	0	650.14	191.57	69.54	319.44	90.49	682.60	882.25	379.61	128.84	594.71	597.29	549.48	596.73	563.13	298.18	652.84	819.45	313.76	525.79	440.87	556.17	520.06	468.46	240.82	403.33	1630.78	738.41	1038.73	1188.39
22	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.76	0.00	4.04	0.00
23	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	5.45	2.92	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	6.57	0.00	1.93	1.52
24	E2a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	E2a_E7a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	ER2c	ExonRegion	0	32.24	4.61	9.96	14.70	1.57	7.27	3.92	4.11	3.44	10.14	8.25	3.20	1.14	18.17	2.94	17.80	21.60	19.91	27.92	17.04	17.71	6.05	4.58	11.03	5.51	3.58	1.30	2.70	1.66
27	E2_Db	KnownBoundary	0	65.12	3.88	2.94	29.55	7.37	23.17	0.00	4.53	20.74	7.07	10.28	6.66	0.00	28.36	0.00	29.07	32.48	18.49	48.55	29.11	45.32	5.98	4.63	11.07	6.59	0.00	5.47	2.20	6.40
28	E2b_E3b	KnownJunction	0	0.00	0.00	1.25	0.00	0.00	3.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.95	0.00	0.00	0.00	0.00	2.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER2d	ExonRegion	0	30.37	10.75	4.39	16.95	2.72	11.79	4.67	1.21	5.58	13.13	6.28	2.25	1.51	15.74	1.61	11.18	17.67	17.35	33.57	13.33	15.80	5.46	4.75	6.27	8.39	0.61	1.71	4.68	1.62
30	E2_Dc	NovelBoundary	0	51.61	9.11	9.52	10.78	0.00	6.83	7.84	3.88	14.59	9.27	4.49	1.20	1.37	26.17	0.00	13.39	22.89	18.62	56.65	15.46	11.47	4.91	2.51	20.04	11.86	8.33	0.00	3.55	0.00
31	I2	Intron	0	7.38	6.00	1.73	4.20	1.76	5.26	1.54	1.20	1.83	6.12	2.97	1.83	0.71	5.78	1.66	11.50	9.75	5.38	10.21	2.90	6.29	0.89	0.73	3.00	1.74	1.24	0.54	2.28	1.16
32	I2_AR2	ActiveIntronRegion	0	12.10	8.77	2.90	6.67	2.73	5.20	2.50	2.63	1.63	8.25	4.58	1.99	1.36	8.53	1.77	11.18	13.34	8.67	16.05	2.62	8.32	1.68	1.23	5.07	2.39	1.95	1.25	3.85	1.58
33	I2_SR2	SilentIntronRegion	0	4.73	4.46	1.07	2.81	1.22	5.34	1.01	0.39	1.96	4.94	2.08	1.76	0.35	4.25	1.60	11.77	7.76	3.53	6.94	3.09	5.18	0.45	0.45	1.84	1.37	0.84	0.13	1.39	0.93
34	E3_Aa	NovelBoundary	0	2.48	4.27	4.76	0.00	0.00	5.18	0.00	0.00	10.26	5.11	8.07	3.19	0.00	9.59	0.00	9.87	34.28	0.00	0.00	0.00	0.00	0.00	0.00	5.86	3.49	1.89	0.00	4.40	0.00
35	ER3a	ExonRegion	0	10.20	6.89	2.84	4.01	4.15	13.25	4.34	2.84	5.18	10.33	5.72	3.36	1.53	11.47	9.63	18.08	23.72	6.86	5.91	2.57	7.15	2.21	1.54	3.20	5.49	4.59	3.58	5.04	3.78
36	E3_Ab	KnownBoundary	0	11.09	11.63	2.77	0.00	0.00	12.62	11.84	2.29	13.46	1.92	7.66	9.76	1.24	11.30	8.17	6.27	26.20	9.25	8.09	3.23	3.57	5.59	0.00	7.96	6.97	0.00	7.36	3.73	2.05
37	ER3b	ExonRegion	0	557.02	384.33	274.30	581.21	217.00	671.57	562.63	326.85	110.73	442.78	539.46	420.26	372.92	514.84	286.80	460.53	501.57	264.07	747.89	550.62	608.67	305.13	306.58	299.74	404.76	571.58	600.09	449.88	523.44
38	E3_Da	NovelBoundary	0	0.00	6.98	2.47	0.00	0.00	6.87	0.00	0.00	4.87	9.11	8.26	1.39	0.00	7.40	0.00	2.91	11.75	5.39	0.00	4.13	6.02	0.00	2.51	3.05	0.00	0.00	0.00	1.75	0.00
39	E3a_E4a	KnownJunction	0	781.38	469.72	504.78	1704.61	826.46	1212.65	728.97	375.48	165.63	690.02	811.74	424.33	427.96	585.02	387.08	600.97	627.87	309.52	809.02	804.50	910.63	291.66	368.04	409.80	565.02	477.93	919.06	482.47	428.65
40	I3	Intron	0	2.82	5.65	0.97	2.10	1.43	7.63	1.18	0.27	2.70	2.32	2.43	1.53	0.57	4.29	5.91	9.75	8.07	4.88	8.87	3.22	7.50	0.00	0.00	2.20	2.09	0.23	0.00	1.67	1.75
41	I3_SR1	SilentIntronRegion	0	2.64	2.65	1.38	5.90	2.01	9.05	0.83	0.00	6.45	2.38	0.00	1.78	0.00	5.03	2.26	7.88	6.14	1.58	5.26	1.13	6.45	0.00	0.00	1.77	1.76	0.00	0.00	2.68	0.82
42	I3_SR2	SilentIntronRegion	0	2.97	7.40	0.77	0.00	1.13	6.98	1.40	0.42	0.65	2.33	3.84	1.42	0.89	3.96	8.06	10.97	9.30	6.82	11.04	4.45	8.22	0.00	0.00	2.48	2.31	0.36	0.00	1.13	2.31
43	E4_Aa	NovelBoundary	0	10.09	0.00	1.54	0.00	0.00	3.38	2.92	2.54	3.23	5.23	1.27	9.43	3.57	6.71	16.14	10.25	18.21	9.25	8.09	10.75	4.97	0.00	0.00	2.75	1.52	3.91	0.00	3.77	1.29
44	ER4a	ExonRegion	0	445.45	452.85	277.07	1061.05	391.11	861.22	594.34	181.09	133.32	439.72	696.67	398.64	342.39	427.82	307.00	448.32	468.92	253.04	902.02	585.05	826.99	161.80	266.33	320.38	392.41	234.98	792.44	287.86	294.75
45	E4_Da	NovelBoundary	0	0.00	9.70	0.00	0.00	0.00	3.76	0.00	0.00	1.55	1.56	0.00	0.00	2.93	2.30	0.00	2.91	4.05	0.00	8.09	4.13	1.72	0.00	0.00	2.75	0.00	0.00	0.00	0.00	0.00
46	E4a_E5a	KnownJunction	0	342.82	465.56	164.89	970.40	258.19	633.45	681.03	148.25	179.70	397.82	676.06	404.45	361.66	405.73	475.98	505.35	457.12	299.88	1092.48	502.81	776.62	120.81	287.37	306.55	322.71	179.68	914.09	218.46	298.94
47	I4	Intron	0	2.12	4.14	0.29	1.66	0.57	4.07	1.17	0.21	1.43	1.76	0.55	1.22	0.49	2.83	3.73	8.79	4.76	2.79	4.08	2.83	3.81	0.21	0.21	1.25	0.25	0.09	0.74	1.13	0.43
48	I4_SR1	SilentIntronRegion	0	2.13	4.16	0.29	1.67	0.57	4.09	1.17	0.21	1.44	1.77	0.55	1.22	0.49	2.84	3.75	8.82	4.78	2.81	4.10	2.85	3.82	0.21	0.21	1.25	0.25	0.09	0.75	1.14	0.43
49	E5_Aa	NovelBoundary	0	3.01	4.85	0.00	9.27	0.00	0.00	0.00	0.00	4.23	0.00	3.92	2.56	0.00	4.85	25.11	10.71	6.75	0.00	16.18	3.64	0.00	0.00	0.00	3.05	0.00	2.19	0.00	0.00	2.01
50	ER5a	ExonRegion	0	562.96	564.37	212.25	680.38	277.92	790.82	649.65	298.92	147.22	427.55	699.75	418.33	379.76	452.15	429.51	549.08	465.25	294.66	1124.27	639.79	863.20	223.59	325.85	356.48	456.49	245.46	902.62	255.93	322.19
51	E5_Da	KnownBoundary	0	2.83	13.96	0.00	0.00	0.00	5.83	0.00	0.00	1.52	6.07	0.00	0.00	5.35	6.76	0.00	14.31	5.04	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
52	E5a_E6a	KnownJunction	0	435.02	395.36	278.10	636.94	239.18	486.16	509.78	292.47	149.37	310.86	477.68	364.84	399.23	386.32	449.86	404.30	518.97	124.06	906.36	404.98	580.96	185.04	335.39	295.31	354.42	250.83	1090.41	238.54	354.56
53	ER5b	ExonRegion	0	3.09	6.57	0.10	0.86	0.00	5.82	1.66	0.00	0.86	4.16	1.26	1.27	0.96	3.04	0.99	6.92	1.94	0.96	2.53	1.07	5.33	0.64	1.38	0.51	0.92	0.97	1.45	1.05	0.55
54	E5_Db	NovelBoundary	0	3.01	0.00	0.00	10.57	0.00	7.40	2.69	0.00	1.16	5.59	0.00	0.00	0.00	0.00	8.37	17.82	1.40	19.26	8.09	3.89	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	1.85
55	I5	Intron	0	3.56	4.38	0.46	4.64	0.45	2.16	0.93	1.02	1.86	2.80	0.44	1.88	0.00	4.43	2.64	7.21	6.76	4.84	6.20	1.75	2.64	0.00	0.00	3.78	1.32	0.87	0.17	0.45	0.87
56	I5_SR1	SilentIntronRegion	0	1.29	4.14	0.66	3.79	0.65	1.81	0.80	0.29	2.41	1.66	0.11	1.47	0.00	2.87	2.55	5.56	5.09	4.76	4.30	0.89	2.67	0.00	0.00	2.80	0.93	0.00	0.24	0.22	0.60
57	I5_AR1	ActiveIntronRegion	0	6.43	5.75	0.00	5.48	0.00	7.05	0.00	3.68	1.69	4.33	2.38	2.78	0.00	5.44	0.00	7.59	8.01	7.85	9.05	0.00	2.85	0.00	0.00	7.53	2.86	2.36	0.00	1.63	1.34
58	I5_AR2	ActiveIntronRegion	0	9.05	4.97	0.00	6.70	0.00	2.77	1.32	2.67	0.55	5.56	1.14	2.84	0.00	8.26	3.02	11.31	10.85	4.90	10.76	4.00	2.56	0.00	0.00	6.03	2.21	2.94	0.00	0.95	1.51
59	E6_Aa	NovelBoundary	0	10.62	4.85	3.84	0.00	0.00	3.91	0.00	12.29	8.37	0.00	0.00	8.37	0.00	10.30	0.00	3.21	9.77	5.39	8.09	4.13	1.80	0.00	0.00	8.67	5.80	0.00	0.00	0.00	6.60
60	ER6a	ExonRegion	0	663.78	445.11	312.76	724.55	257.29	609.55	540.43	399.91	152.12	448.11	587.91	437.02	415.70	542.64	404.13	539.42	477.14	292.72	878.09	535.01	655.44	358.87	387.27	369.88	513.51	283.13	892.59	304.41	361.72
61	E6_Da	NovelBoundary	0	2.30	0.00	0.00	0.00	0.00	3.91	0.00	0.00	2.86	0.00	7.31	3.55	0.00	3.04	0.00	0.00	10.15	0.00	8.09	0.00	1.85	0.00	0.00	2.81	3.41	6.31	0.00	0.00	0.00
62	E6a_E7a	KnownJunction	0	562.49	444.42	207.17	740.04	253.92	527.36	471.56	395.09	201.11	427.14	416.66	376.53	478.02	505.88	499.10	445.76	510.83	261.36	549.61	396.71	548.07	412.62	386.46	348.13	467.47	285.42	652.23	268.15	392.37
63	I6	Intron	0	0.94	1.42	0.18	1.18	0.81	1.66	0.00	0.30	2.47	1.51	0.59	0.82	0.00	1.77	2.63	4.06	2.38	1.40	1.76	0.00	2.51	0.00	0.10	1.54	1.18	0.09	0.10	0.18	0.33
64	I6_AR1	ActiveIntronRegion	0	2.26	1.19	0.39	0.00	0.00	2.87	0.00	0.00	5.29	2.25	0.84	1.73	0.00	3.13	3.65	6.06	1.40	0.00	2.99	0.00	3.54	0.00	0.00	2.12	1.88	0.00	0.00	0.00	0.47
65	I6_SR1	SilentIntronRegion	0	0.54	1.49	0.12	1.55	1.06	1.30	0.00	0.40	1.60	1.29	0.52	0.54	0.00	1.36	2.33	3.46	2.70	1.83	1.38	0.00	2.20	0.00	0.13	1.37	0.97	0.11	0.13	0.24	0.29
66	E7_Aa	NovelBoundary	0	0.00	3.49	1.49	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	6.12	7.65	0.00	0.00	0.00	2.05	0.00	0.00	0.00	1.55	3.26	0.00	0.00	0.00
67	ER7a	ExonRegion	0	548.96	403.13	192.83	656.64	273.02	494.45	497.65	357.44	172.85	372.86	434.25	421.88	444.61	493.32	364.44	446.48	473.22	272.98	734.93	426.07	504.60	355.66	368.17	318.08	424.43	287.76	682.83	279.23	363.94
68	E7_Da	KnownBoundary	0	658.28	400.21	174.58	780.16	348.83	688.51	585.76	372.60	203.30	433.25	549.71	421.44	418.98	565.90	433.12	519.58	451.06	353.18	1076.30	630.66	690.98	378.49	375.73	401.78	559.87	251.22	808.48	315.15	329.51
69	ER7b	ExonRegion	0	476.97	585.83	156.71	632.25	266.53	647.00	668.62	297.77	393.86	428.56	446.68	389.84	512.54	444.75	938.29	517.48	487.93	250.72	1079.34	533.49	687.75	266.71	281.33	411.28	386.83	194.68	730.05	204.64	347.19
70	ER7c	ExonRegion	0	6.43	16.42	0.00	7.31	14.94	11.00	19.15	0.00	15.17	3.61	4.17	2.47	5.85	5.90	30.80	7.59	6.01	0.00	18.10	12.65	8.56	1.80	3.62	4.30	0.71	3.14	10.99	4.89	0.00
71	IG46_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	3.48	0.00	0.00	0.00	1.69	0.00	0.00	0.00	3.99	0.00	0.00	3.33	0.00	0.00	0.00	0.00	0.00	1.86	1.24	0.00	0.00	1.41	0.68