Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	REST	Gene	0	51.38	248.42	87.76	45.53	50.50	176.99	51.67	15.83	101.72	160.12	182.98	138.29	86.27	177.75	65.24	130.59	133.75	138.91	124.53	89.09	164.28	32.34	106.07	91.55	120.42	80.50	176.16	65.03	80.18
2	309042	Transcript	0	39.06	159.85	63.19	24.86	26.16	138.65	19.47	11.22	52.48	125.20	155.31	98.74	49.13	161.31	19.80	100.96	117.60	113.58	82.37	60.24	107.62	26.51	80.78	36.55	79.05	60.16	92.80	55.15	41.09
3	358605	Transcript	0	2.77	9.17	7.20	1.52	1.66	8.94	0.92	0.61	2.95	8.84	13.44	8.76	2.60	12.62	0.23	8.65	9.22	7.85	8.30	5.04	6.78	2.48	4.22	2.06	5.72	3.93	6.03	3.33	1.06
4	ER1a	ExonRegion	0	19.73	16.55	14.52	4.89	3.74	29.09	1.48	3.66	3.24	16.81	13.45	12.75	6.21	33.17	0.00	32.58	16.65	20.66	13.34	12.18	22.15	25.61	17.03	2.57	12.88	24.03	7.25	12.70	8.26
5	E1a_E2a	KnownJunction	0	19.47	48.48	23.84	0.00	12.23	37.83	2.92	13.93	3.20	36.63	42.36	31.69	12.83	64.19	0.00	47.20	50.08	52.01	8.09	26.79	39.83	12.74	27.04	2.33	16.86	26.69	21.27	15.95	10.96
6	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.52	1.20	0.00	0.00	2.15	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	4.04	0.00	3.83	0.00	0.00	0.00	0.00
7	I1_AR1	ActiveIntronRegion	0	0.00	0.47	1.12	0.00	0.00	0.00	0.00	0.00	0.00	1.65	0.00	0.00	0.74	1.81	0.00	0.00	0.00	5.46	1.94	1.20	0.20	0.00	2.07	0.00	0.00	0.00	0.00	0.23	1.34
8	I1_AR2	ActiveIntronRegion	0	1.48	1.53	0.71	0.00	0.00	0.00	0.00	0.00	0.00	4.90	0.02	0.89	0.82	1.52	0.00	0.00	0.00	2.19	1.98	1.78	3.01	1.29	2.34	0.00	1.03	0.00	0.00	1.47	0.68
9	I1_SR2	SilentIntronRegion	0	0.73	3.94	0.57	2.44	2.99	1.29	0.00	0.00	0.00	0.49	0.40	1.47	0.00	1.05	1.57	3.75	1.52	1.96	0.57	0.00	1.95	0.00	1.62	0.00	0.49	0.00	0.31	2.04	0.00
10	I1_AR3	ActiveIntronRegion	0	0.82	1.40	1.93	0.92	0.75	2.79	1.33	0.47	0.14	2.59	3.94	2.37	0.41	3.09	0.59	2.37	2.64	3.54	2.24	0.51	3.81	0.00	5.42	0.28	1.89	1.01	0.35	2.02	0.00
11	E2_Ab	NovelBoundary	0	9.20	31.12	27.81	8.84	0.00	30.92	0.00	2.04	3.75	23.85	17.40	21.29	7.93	35.87	0.00	31.59	29.26	0.00	0.00	10.17	27.52	9.77	29.50	7.36	23.56	13.65	13.96	16.00	1.35
12	ER2a	ExonRegion	1	19.72	56.50	30.74	7.31	8.47	49.21	4.03	12.52	3.37	37.10	41.65	28.57	14.42	69.39	0.00	52.89	49.18	45.85	13.58	25.30	42.93	12.44	41.77	3.44	21.87	34.89	24.18	20.70	9.40
13	ER2b	ExonRegion	1	75.09	168.42	169.61	37.57	30.53	199.50	22.21	18.61	29.04	195.94	219.90	109.52	44.31	255.85	8.60	152.48	125.74	141.83	93.23	65.00	131.48	45.44	148.24	32.34	111.79	114.45	113.60	87.88	46.98
14	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	1.40	1.80	6.36	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.77	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2a_E3a	KnownJunction	1	83.17	237.92	95.15	49.39	32.72	308.94	21.34	2.24	83.23	284.57	339.53	171.35	82.99	333.55	8.17	173.42	202.70	236.31	129.48	100.23	191.69	41.28	197.74	47.49	156.96	133.42	181.10	116.06	82.01
16	E2a_E4b	NovelJunction	0	3.01	0.00	2.77	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.90	0.00	0.00	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E2_Db	NovelBoundary	0	0.00	3.78	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
18	E2b_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	ER2c	ExonRegion	0	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.30	0.00	0.16	0.11	0.00	0.32	1.13	0.68	0.00	2.81	0.18	1.35	0.00	0.00	0.00	0.20	0.23	0.00	0.00
20	I2_AR2	ActiveIntronRegion	0	3.08	0.00	0.00	0.00	3.51	0.00	0.00	0.00	0.00	2.07	0.00	0.00	0.00	0.00	0.00	3.56	1.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	I2_AR5	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	1.37	0.00	0.00	1.12	0.20	0.00	1.12	0.00	0.00	0.00	0.00	0.68	0.00	4.11	0.00	0.00	0.00	0.00	4.30	0.97	0.00	0.00	0.44	0.00
22	I2_SR2	SilentIntronRegion	0	0.00	1.42	0.00	0.00	0.00	0.06	0.00	0.00	0.05	0.00	0.00	0.54	0.00	0.00	2.41	0.00	0.66	0.85	2.81	1.21	3.75	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00
23	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.49	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.95	0.00	0.00	2.09	5.14	8.09	0.00	3.53	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
24	ER3a	ExonRegion	1	54.76	206.01	93.03	19.15	27.75	168.04	18.19	15.76	51.19	180.57	260.62	135.73	56.54	234.15	8.40	121.38	153.10	135.45	96.66	73.55	134.33	31.68	128.62	29.19	118.43	83.61	111.77	93.32	43.49
25	E3_Da	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.83	3.24	0.00	0.00	1.97	0.00	0.00	3.75	3.49	0.00	8.09	0.00	12.19	0.00	2.51	0.00	1.59	0.00	0.00	0.00	0.00
26	E3a_E4b	KnownJunction	1	37.87	255.46	146.55	41.20	33.75	179.18	15.39	16.67	60.87	159.78	215.40	153.73	52.13	243.35	9.97	144.43	208.46	162.85	161.62	76.00	125.95	37.53	71.26	30.92	102.10	58.71	72.91	80.83	27.01
27	I3	Intron	0	2.00	2.68	0.51	0.40	0.54	3.08	1.04	0.15	2.57	2.55	0.85	0.82	0.81	1.46	3.23	1.21	3.07	1.64	3.33	1.97	2.24	0.15	0.23	0.93	0.62	0.83	0.36	1.57	0.88
28	I3_SR1	SilentIntronRegion	0	1.95	2.83	0.43	0.17	0.20	2.65	0.73	0.20	2.37	2.25	0.80	0.86	0.66	1.33	3.42	1.15	3.08	1.58	3.49	2.04	2.21	0.20	0.24	0.68	0.47	0.89	0.47	1.63	0.61
29	I3_AR1	ActiveIntronRegion	0	0.00	1.51	0.00	4.97	3.49	6.30	0.36	0.00	4.97	2.17	0.00	0.00	0.00	0.47	10.19	0.71	3.67	3.82	2.17	8.94	1.43	0.00	1.23	1.20	0.00	1.51	0.00	1.56	0.54
30	I3_SR2	SilentIntronRegion	0	2.29	2.26	0.84	0.90	1.53	4.37	2.13	0.00	3.12	3.63	1.05	0.74	1.38	1.95	2.14	1.47	3.03	1.71	2.87	1.28	2.40	0.00	0.11	1.75	1.17	0.60	0.00	1.34	1.84
31	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.07	0.00	0.00	1.19	1.68	3.51	4.55	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E4_Ab	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	5.29	0.00	0.00	6.27	5.51	3.23	0.00	0.00	3.21	0.00	0.00	4.37	0.00	0.00	0.00	1.72	0.00	2.31	0.00	0.00	0.00	0.00	2.11	0.00
33	ER4a	ExonRegion	0	8.31	27.51	21.46	4.57	4.98	26.81	2.77	1.84	7.72	26.53	40.02	26.28	7.63	37.76	0.70	25.62	26.55	22.86	24.89	12.30	20.15	6.08	12.66	6.18	17.15	11.59	17.86	9.98	3.19
34	ER4b	ExonRegion	1	66.96	234.80	145.00	44.98	43.48	155.79	37.58	19.76	49.14	164.65	204.00	137.04	63.19	208.18	23.85	129.75	138.05	150.02	106.79	80.43	147.10	41.25	140.09	52.27	133.16	108.57	139.04	92.23	62.72
35	E4_Da	KnownBoundary	1	46.48	170.34	143.76	52.63	46.72	188.04	39.31	15.03	73.94	128.43	221.79	136.59	71.81	217.13	26.11	133.49	143.61	108.01	161.85	75.26	220.77	19.06	119.14	44.50	117.29	74.16	156.40	95.93	54.14
36	ER4c	ExonRegion	0	38.69	298.04	38.47	52.06	64.46	198.26	72.91	13.77	162.26	160.92	174.17	157.33	118.76	151.36	112.04	134.82	142.99	141.89	153.85	107.60	196.43	24.33	81.97	139.91	124.22	59.73	231.16	46.51	106.48
37	IG15_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	0.00	2.60	0.00	5.60	2.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
38	IG15_AR3	ActiveIntergenicRegion	0	0.00	4.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.00	0.00	0.00
39	IG15_SR5	SilentIntergenicRegion	0	0.05	1.12	1.06	0.00	0.00	0.20	0.00	0.85	2.92	0.19	0.97	0.58	0.80	0.31	9.67	2.17	2.45	0.34	1.12	0.30	0.02	0.31	0.32	0.38	0.49	0.00	0.00	4.00	0.99
40	IG15_AR5	ActiveIntergenicRegion	0	0.00	0.00	0.21	0.00	0.00	4.05	0.00	7.86	4.89	4.10	4.12	2.64	3.05	0.02	0.00	0.00	4.03	0.00	0.00	2.13	2.66	0.00	0.00	0.99	0.97	0.00	0.00	6.12	0.47
41	IG15_SR6	SilentIntergenicRegion	0	1.45	5.41	1.56	1.85	1.89	3.40	2.40	1.49	5.72	3.89	3.94	2.24	2.20	2.75	6.04	2.51	5.14	2.76	6.18	2.76	4.02	1.80	2.68	5.87	4.19	5.32	3.60	7.57	3.69