Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-391M1.2	Gene	0	18.46	6.14	11.75	14.94	34.66	10.49	57.89	22.48	8.36	13.35	6.56	12.36	7.26	6.41	30.44	19.00	8.23	8.56	12.66	15.35	8.35	12.26	5.51	8.67	10.78	6.77	4.83	5.59	3.70
2	420850	Transcript	0	45.47	7.86	16.33	14.24	40.79	13.88	73.29	34.54	12.89	14.87	8.63	13.58	11.45	14.35	50.53	22.61	8.83	10.52	13.52	22.80	9.06	19.20	6.00	15.89	13.99	8.97	6.42	9.20	8.81
3	425156	Transcript	0	1.34	1.73	0.32	0.81	5.87	2.04	5.82	2.09	2.62	4.02	0.84	1.80	0.46	0.80	7.40	1.62	1.75	3.43	3.45	2.12	2.75	0.31	0.77	2.09	1.63	1.65	0.73	1.76	0.73
4	439293	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.13	0.00	0.79	0.19	0.15	0.08	0.33	0.00	0.30	0.91	4.13	0.00	0.00	0.00	0.00	0.12	0.00	0.14	0.18	0.00	0.00	0.00	0.00
5	452768	Transcript	0	0.00	0.00	1.20	0.00	0.00	1.96	26.20	20.35	4.05	0.00	0.00	15.24	3.28	0.00	9.97	3.14	4.52	0.00	0.00	3.14	3.41	0.00	0.00	2.87	0.00	0.00	0.00	4.31	0.00
6	ER1a	ExonRegion	0	0.00	0.00	0.36	0.00	3.39	0.33	0.16	0.00	0.27	0.98	0.00	0.05	0.00	0.00	0.00	1.52	0.28	0.00	0.00	0.45	0.34	0.00	0.00	0.52	0.34	0.00	0.00	0.07	1.66
7	ER1b	ExonRegion	0	5.30	2.76	2.14	8.42	18.17	3.78	9.52	5.69	2.71	5.62	1.33	2.12	0.56	0.38	2.92	6.44	0.92	5.18	3.65	3.61	1.76	4.94	0.38	2.87	4.67	1.07	0.43	0.74	2.10
8	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	6.19	0.00	2.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E1_Ad	KnownBoundary	0	26.01	0.00	1.12	31.28	118.49	6.37	30.78	2.04	5.09	3.32	7.05	5.75	11.53	5.32	9.57	12.24	4.86	0.00	0.00	3.56	0.00	4.28	4.43	5.08	15.57	7.17	12.13	0.00	2.77
10	ER1c	ExonRegion	0	46.44	3.83	8.04	32.91	136.16	12.83	83.99	20.87	16.10	17.57	7.14	11.75	15.80	6.80	25.20	26.15	9.68	19.10	26.40	20.61	4.75	13.52	15.37	10.40	28.82	12.05	9.77	5.43	6.93
11	ER1d	ExonRegion	1	280.50	50.29	105.96	202.36	491.28	109.57	720.14	241.91	65.92	128.72	55.26	102.41	67.82	53.56	301.08	254.69	52.26	76.04	176.59	137.00	72.13	162.77	75.95	55.34	126.62	64.90	46.70	32.71	26.17
12	E1_Da	NovelBoundary	0	6.02	0.00	1.20	0.00	0.00	3.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.22	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25
13	E1a_E2a	KnownJunction	1	308.97	79.89	220.52	330.44	614.69	156.16	969.33	302.53	83.74	178.96	86.01	181.38	92.99	76.71	551.72	385.02	90.73	52.91	218.27	178.71	104.77	237.30	104.80	70.10	164.00	80.29	39.96	43.67	34.80
14	E1a_E3a	NovelJunction	0	4.72	0.00	0.00	8.20	0.00	0.00	26.03	3.78	3.17	2.04	0.00	0.00	0.00	1.37	8.37	7.65	3.38	0.00	0.00	4.13	0.00	9.24	0.00	0.00	5.15	2.19	7.45	0.00	4.16
15	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	8.40	4.62	8.09	0.00	0.00	0.00	2.22	0.00	3.67	0.00	0.00	2.29	0.00
16	ER2a	ExonRegion	0	71.37	27.63	104.08	73.41	167.71	39.04	209.48	85.04	23.82	47.35	24.09	60.15	37.06	29.92	128.81	78.91	31.57	26.45	39.46	52.72	26.26	46.09	22.67	29.37	47.31	26.25	13.60	16.76	15.88
17	E2_Da	NovelBoundary	0	3.01	4.85	5.21	0.00	0.00	3.91	2.92	0.00	0.00	0.00	0.00	0.00	0.00	3.57	8.37	3.29	3.53	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00	0.00	0.00	0.00	0.00
18	E2a_E3a	KnownJunction	0	78.63	4.85	13.50	0.00	29.33	9.75	35.19	36.33	14.80	5.95	4.02	5.78	9.14	19.63	66.97	10.40	5.04	9.25	8.09	12.16	3.93	14.83	2.36	18.24	8.22	5.79	2.53	8.94	11.55
19	E2a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.54	4.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E2a_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	E3_Aa	NovelBoundary	0	5.54	0.00	0.00	0.00	0.00	0.00	0.00	2.44	1.43	7.19	0.00	2.77	0.00	1.97	0.00	7.65	13.91	0.00	0.00	12.40	2.05	1.90	0.00	0.00	0.00	0.00	15.21	2.11	0.00
22	ER3a	ExonRegion	0	57.78	18.74	35.14	42.72	89.66	31.55	184.51	67.28	23.59	37.68	21.87	34.91	25.20	23.41	84.61	55.92	21.17	22.31	32.46	55.78	22.90	42.78	15.64	28.90	33.41	21.11	16.73	18.60	13.22
23	E3_Da	NovelBoundary	0	2.24	0.00	5.71	8.20	29.47	7.17	24.03	0.00	13.31	7.87	2.88	15.06	8.06	6.78	9.97	14.00	12.16	4.62	0.00	3.14	1.60	4.23	4.19	9.09	3.83	7.51	14.56	12.09	1.95
24	I3_AR2	ActiveIntronRegion	0	0.57	2.43	0.44	0.00	1.94	2.18	3.73	0.49	3.19	3.43	4.09	4.56	2.33	1.02	2.79	1.86	1.58	0.25	1.27	1.43	2.61	0.00	0.96	2.56	0.38	1.45	0.00	0.86	1.15
25	I3_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	Ix	Intron	0	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	1.19	1.75	0.00	0.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.00	1.20	1.77	0.00	0.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	Ix_AR2	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.33	0.28	0.80	0.00	0.00	0.00	0.00	0.77	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00
29	ER4a	ExonRegion	0	0.00	0.00	5.16	2.26	4.21	4.18	12.69	15.82	2.15	4.95	0.97	11.53	1.50	0.30	6.61	5.68	6.48	0.63	2.10	2.99	2.60	0.00	2.94	2.47	0.87	0.67	1.81	2.32	0.64
30	E4a_E5a	KnownJunction	0	0.00	0.00	9.37	0.00	7.37	1.65	2.69	4.53	0.00	4.99	2.72	8.43	0.00	0.00	19.53	0.00	5.33	0.00	0.00	4.13	2.05	0.00	0.00	3.05	1.48	0.00	0.00	1.98	0.00
31	ER5a	ExonRegion	0	0.94	0.00	3.97	3.15	29.25	1.43	11.56	14.63	2.76	3.56	2.89	9.67	1.98	0.40	19.94	1.31	3.80	0.85	0.00	4.17	2.71	0.00	0.76	1.74	0.10	1.87	1.61	1.57	0.02
32	E5_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	6.34	0.00	2.92	2.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E5a_E5b	KnownJunction	0	0.00	0.00	1.20	0.00	0.00	1.96	26.20	20.35	4.05	0.00	0.00	15.24	3.28	0.00	9.97	3.14	4.52	0.00	0.00	3.14	3.41	0.00	0.00	2.87	0.00	0.00	0.00	4.31	0.00
34	ER5b	ExonRegion	0	0.00	0.15	0.00	0.00	8.96	0.49	2.57	1.24	0.77	2.31	0.00	1.43	0.01	0.16	0.99	0.18	1.89	0.34	0.00	0.98	0.28	0.00	0.01	0.39	0.25	0.00	0.00	0.29	0.35
35	E5_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	22.11	0.00	5.78	0.00	1.22	4.07	0.00	0.00	0.00	0.00	0.00	3.75	1.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER5c	ExonRegion	0	0.69	0.91	2.04	5.80	11.35	3.21	19.59	12.65	3.84	4.45	3.09	8.46	0.73	0.66	9.94	4.98	4.10	2.30	2.05	1.62	3.81	1.17	0.59	2.95	0.69	0.25	0.59	0.91	0.00
37	E5_Db	KnownBoundary	0	0.00	0.00	1.37	0.00	0.00	0.00	16.94	2.39	1.25	1.48	8.67	2.89	0.00	1.13	9.77	0.00	2.34	10.02	16.18	7.19	3.45	0.00	0.00	2.51	0.00	0.00	0.00	0.00	0.00
38	ER5d	ExonRegion	0	2.67	3.31	0.63	1.63	2.77	3.58	9.07	2.93	4.48	5.73	1.69	2.18	0.92	1.44	13.81	3.06	1.60	6.52	6.89	3.26	5.22	0.61	1.54	3.80	3.00	3.30	1.45	3.24	1.11
39	E5_Dc	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	5.03	0.00	0.00	0.00	0.00	3.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E6_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.54	1.34	0.00	0.00	3.34	3.89	0.00	0.00	0.00	1.98	0.00	0.00	0.00	0.00	2.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER6a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.26	0.00	1.59	0.37	0.30	0.16	0.67	0.00	0.59	1.83	8.27	0.00	0.00	0.00	0.00	0.23	0.00	0.28	0.37	0.00	0.00	0.00	0.00