Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C3orf62	Gene	0	18.92	31.94	31.95	16.79	18.47	33.80	24.78	20.00	33.69	38.14	16.25	56.11	18.99	21.29	37.03	29.70	48.04	25.72	27.56	13.65	22.78	16.14	12.40	32.85	21.42	18.38	21.64	34.49	20.72
2	343010	Transcript	0	30.07	40.16	59.64	21.87	24.85	54.32	29.17	19.39	56.38	56.60	28.57	55.07	39.15	32.56	41.86	39.37	63.69	44.66	34.32	21.70	48.04	34.93	22.63	46.15	30.59	24.98	22.52	45.38	25.24
3	436325	Transcript	0	0.00	0.00	0.00	0.00	29.33	0.00	5.55	0.00	0.00	1.96	0.00	0.00	1.62	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.35	0.00	0.00
4	424960	Transcript	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.91	0.00	3.29	1.40	0.00	0.00	0.00	1.97	0.00	0.00	0.00	3.37	8.58	3.98	0.00	0.00
5	479673	Transcript	0	6.70	5.26	5.63	3.49	5.44	9.70	3.77	2.76	10.05	8.11	4.53	11.44	2.81	3.76	13.16	10.80	12.01	2.87	6.95	3.08	5.07	1.94	1.50	10.21	2.98	5.57	7.05	7.59	4.37
6	ER1a	ExonRegion	0	43.20	60.73	88.82	28.13	33.29	80.59	42.70	26.37	102.38	86.81	49.19	63.83	69.45	50.50	58.81	48.73	87.29	60.33	50.68	36.23	77.87	63.05	35.56	78.65	47.72	37.20	31.51	61.40	39.46
7	E1_Ab	KnownBoundary	0	22.06	8.53	26.56	0.00	7.07	3.45	0.00	2.09	5.91	18.22	1.30	10.66	6.02	9.33	56.41	7.50	11.88	23.76	0.00	2.98	7.10	7.24	4.63	2.75	3.14	11.33	0.00	6.38	2.97
8	ER1b	ExonRegion	1	16.43	4.88	33.05	14.40	26.72	8.58	3.42	10.88	2.76	15.53	5.48	10.91	6.02	10.83	46.16	8.82	23.77	18.61	3.02	3.07	5.71	6.12	7.12	2.15	4.46	12.91	6.16	16.45	9.11
9	E1_Da	KnownBoundary	1	11.62	8.14	20.08	19.20	25.94	9.02	4.69	16.17	0.00	16.38	7.66	7.92	1.85	10.66	15.95	6.35	23.39	28.51	8.09	3.64	5.50	6.61	13.89	0.00	4.96	18.58	4.42	22.87	11.32
10	E1a_E1d	KnownJunction	0	0.00	0.00	0.00	0.00	29.33	0.00	5.55	0.00	0.00	1.96	0.00	0.00	1.62	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.35	0.00	0.00
11	E1a_E2b	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.46	0.00	0.00	7.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	0.00	0.00	3.10
12	ER1c	ExonRegion	0	16.94	19.59	30.46	15.60	16.41	28.04	15.65	12.42	10.38	26.38	7.95	46.30	8.84	14.62	24.91	30.00	40.08	29.00	17.96	7.17	18.20	6.81	9.71	13.66	13.47	12.76	13.53	29.37	11.01
13	E1_Ac	KnownBoundary	0	15.69	15.80	9.89	8.63	6.63	18.61	15.16	6.42	7.22	25.96	5.88	31.60	5.48	8.51	26.31	6.12	32.41	9.50	0.00	7.19	11.11	0.00	4.48	26.50	14.36	11.54	10.19	13.39	17.43
14	E1_Ad	KnownBoundary	0	2.65	4.46	14.95	29.55	0.00	11.82	8.07	10.90	10.32	31.12	6.58	36.11	19.17	7.71	0.00	17.14	37.95	0.00	0.00	0.00	30.93	3.94	10.64	2.81	5.46	12.32	13.52	21.30	10.04
15	ER1d	ExonRegion	0	27.87	49.27	31.42	36.56	29.89	46.74	32.25	33.14	24.72	66.41	21.42	87.82	31.18	30.84	28.00	58.21	90.16	30.02	13.58	8.43	51.35	5.41	16.27	34.42	30.02	36.15	64.10	40.75	30.87
16	ER1e	ExonRegion	0	10.82	17.44	45.78	16.23	25.49	20.17	19.87	12.42	10.16	27.15	9.36	43.08	13.69	9.84	16.42	27.15	40.10	19.14	13.12	6.78	14.62	3.78	12.01	9.98	9.96	15.51	22.63	32.88	12.96
17	E1_Db	KnownBoundary	0	25.66	31.41	41.43	7.98	71.92	23.40	24.26	6.57	42.57	25.76	10.12	43.28	26.75	13.56	8.37	45.67	28.68	18.49	32.37	7.94	12.88	2.48	4.48	18.84	14.02	18.67	52.68	28.67	3.24
18	E1b_E2b	KnownJunction	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	2.34	0.00	0.00	0.00	0.00	0.00	0.91	0.00	3.29	1.40	0.00	0.00	0.00	1.97	0.00	0.00	0.00	3.37	8.58	3.98	0.00	0.00
19	ER1f	ExonRegion	0	23.05	43.65	46.12	16.44	27.18	42.99	44.73	18.79	33.55	43.64	15.77	55.08	21.22	18.90	28.42	39.23	36.84	18.85	31.04	18.17	19.08	9.85	14.77	32.69	25.29	9.32	31.16	25.41	25.83
20	E1_Dc	NovelBoundary	0	6.02	0.00	4.24	0.00	0.00	12.58	2.23	2.54	9.99	3.48	0.00	9.61	1.94	1.24	8.37	10.10	9.36	0.00	8.09	0.00	3.97	4.28	6.30	5.56	10.49	1.76	0.00	0.00	0.00
21	E1c_E2b	KnownJunction	0	44.36	101.22	49.23	50.69	58.65	61.04	71.35	24.63	92.82	99.50	44.35	101.78	47.51	37.18	49.43	98.84	70.68	47.65	129.48	28.45	29.00	22.41	27.53	67.35	41.83	12.49	45.52	75.75	52.23
22	I1	Intron	0	0.00	3.62	4.39	0.00	1.83	1.55	1.51	1.38	4.20	2.71	0.00	3.00	0.49	1.02	0.00	3.72	2.80	2.41	1.20	1.03	3.21	0.00	0.00	1.61	0.54	0.00	2.75	1.22	0.00
23	I1_SR1	SilentIntronRegion	0	0.00	3.62	4.39	0.00	1.83	1.55	1.51	1.38	4.20	2.71	0.00	3.00	0.49	1.02	0.00	3.72	2.80	2.41	1.20	1.03	3.21	0.00	0.00	1.61	0.54	0.00	2.75	1.22	0.00
24	E2_Aa	NovelBoundary	0	0.00	0.00	4.43	0.00	0.00	3.49	0.00	0.00	6.85	0.00	0.00	0.00	0.00	1.37	0.00	2.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.79	0.00	2.19	0.00	0.00
25	ER2a	ExonRegion	0	2.19	2.73	3.66	1.02	1.40	3.61	1.86	1.72	3.38	3.82	1.31	3.42	1.86	0.79	6.89	3.57	4.72	2.15	1.88	1.03	3.03	0.75	0.99	1.84	0.91	2.50	1.30	1.64	2.44
26	E2_Ab	KnownBoundary	0	5.43	0.00	4.63	8.41	0.00	4.95	2.92	0.00	6.46	0.00	0.00	4.31	0.00	0.00	19.33	3.75	2.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	4.45	3.04
27	ER2b	ExonRegion	0	36.65	65.91	49.38	52.07	24.69	63.76	67.85	43.72	64.04	69.41	39.20	109.61	43.22	43.58	78.41	70.11	71.58	50.77	57.10	25.33	44.70	20.07	24.10	66.85	36.30	25.99	39.11	54.24	29.90
28	E2_Da	NovelBoundary	0	5.60	9.21	2.59	0.00	0.00	3.61	0.00	2.09	0.00	3.56	0.00	0.00	1.31	3.15	0.00	0.00	7.45	0.00	8.09	0.00	1.93	0.00	0.00	6.10	3.75	2.02	1.99	2.29	0.00
29	E2a_E3a	KnownJunction	0	41.58	65.05	46.19	82.18	35.66	81.76	87.02	43.59	46.23	68.43	30.78	105.54	43.12	42.19	53.62	70.46	61.95	69.35	80.92	24.31	32.85	25.96	18.81	69.74	22.54	18.67	30.91	49.02	34.33
30	I2_SR1	SilentIntronRegion	0	0.60	1.61	1.30	2.79	0.81	2.14	0.45	1.64	1.15	2.41	0.53	3.11	0.54	0.88	3.42	0.51	5.97	0.86	1.95	0.72	2.46	0.80	0.00	2.39	1.27	0.79	1.42	1.18	1.26
31	I2_AR1	ActiveIntronRegion	0	0.00	4.90	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	1.64	0.00	0.00	0.00	0.00	1.02
32	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.15	0.00	1.89	1.55	5.59	0.00	1.87	1.31	0.86	8.37	3.52	1.40	0.00	8.09	0.00	0.00	0.00	4.14	0.00	5.46	0.00	0.00	0.00	0.00
33	ER3a	ExonRegion	0	30.65	82.53	69.26	87.02	23.91	93.24	93.68	36.18	53.93	71.36	28.86	111.32	36.73	44.13	70.29	69.53	69.24	41.28	78.98	30.78	33.45	24.43	17.36	66.47	50.42	18.39	14.15	52.65	42.92
34	E3_Da	KnownBoundary	0	35.69	121.48	86.78	108.06	21.52	93.16	89.03	24.09	66.69	70.22	31.60	107.41	30.76	39.51	79.93	59.06	76.71	61.52	80.70	38.46	39.63	19.35	16.45	74.05	58.49	18.37	13.77	72.12	55.07
35	ER3b	ExonRegion	0	41.79	86.10	54.94	23.27	24.07	65.16	61.58	45.55	46.25	81.68	31.68	114.45	35.44	43.94	77.97	63.99	75.04	47.89	48.20	16.39	35.32	17.98	22.71	54.53	42.49	27.96	49.04	46.80	54.04
36	E3_Db	KnownBoundary	1	35.80	52.26	31.62	28.90	6.19	41.97	13.62	51.26	32.55	48.73	16.54	101.84	38.37	51.49	88.50	73.97	66.49	33.13	40.46	11.83	16.16	17.89	11.57	60.65	31.56	15.23	22.17	37.29	18.92
37	ER3c	ExonRegion	0	13.46	26.64	16.76	14.19	15.79	24.06	19.90	21.19	24.10	29.24	9.67	60.97	8.00	16.76	35.93	24.28	45.58	19.08	25.70	10.49	11.38	9.01	7.39	27.92	18.06	16.99	20.63	33.40	18.01
38	E3_Dc	KnownBoundary	0	26.19	9.70	8.57	0.00	0.00	15.50	15.22	9.16	21.41	11.10	24.45	24.40	7.55	9.13	62.79	24.02	19.43	4.62	32.37	0.00	7.98	4.62	2.12	27.16	14.81	7.94	1.74	23.18	8.55
39	ER3d	ExonRegion	0	11.22	7.78	7.59	5.96	9.48	15.79	5.69	3.79	16.72	12.41	7.76	19.47	3.76	6.72	19.42	18.03	19.29	3.59	12.03	5.13	7.12	3.13	2.00	18.58	5.06	8.64	12.80	13.55	6.30
40	IG42_AR6	ActiveIntergenicRegion	0	0.93	2.09	0.18	0.00	1.06	2.38	3.06	0.20	3.52	1.25	0.00	2.87	0.28	0.44	2.19	2.15	3.88	0.83	1.04	0.90	1.08	0.39	0.59	1.63	1.39	0.51	0.99	4.41	0.44
41	IG42_SR5	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	4.24	0.00	0.00	0.00	0.00	0.80	0.00	0.69	0.00	0.00	0.00	0.00	1.04	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	IG42_AR5	ActiveIntergenicRegion	0	0.59	2.31	0.34	0.00	1.59	0.41	0.74	1.69	1.04	2.88	0.11	1.69	0.72	0.17	3.98	1.01	2.18	0.53	1.76	1.27	0.92	0.33	0.00	1.58	0.55	0.58	0.34	0.45	0.62
43	IG42_SR4	SilentIntergenicRegion	0	0.15	4.51	1.43	0.00	0.00	1.73	0.00	0.00	2.87	2.10	0.00	1.64	0.00	0.18	3.36	1.81	3.69	0.00	0.91	0.00	2.28	0.00	0.00	1.57	1.55	0.00	0.00	1.14	1.21
44	IG42_AR4	ActiveIntergenicRegion	0	1.43	0.47	2.00	0.81	1.10	2.17	0.91	1.25	1.00	0.49	0.00	2.02	0.29	0.64	3.00	0.28	6.30	1.74	0.94	0.93	1.84	0.00	0.20	2.91	0.86	0.71	0.41	2.04	1.02
45	IG42_AR3	ActiveIntergenicRegion	0	0.00	0.68	0.36	0.00	0.00	2.04	2.14	0.78	1.55	2.45	0.25	1.05	1.23	1.16	0.98	1.05	5.08	0.41	0.68	0.00	3.64	1.15	0.38	4.57	1.21	1.67	0.78	2.08	0.86
46	IG42_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.20	0.00	0.67	0.86	0.00	0.00	0.00	0.00	2.74	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	1.70	0.00	2.17	2.90	0.00