Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NDUFAF3	Gene	0	99.60	80.75	146.10	83.90	212.81	65.50	158.32	75.79	139.81	133.14	66.26	220.37	236.92	63.06	66.97	83.89	122.25	99.29	64.96	108.74	46.96	228.42	143.58	128.22	54.44	85.55	74.45	184.43	83.23
2	326912	Transcript	0	9.15	4.19	17.01	4.90	66.25	2.19	5.01	2.03	1.28	2.74	0.27	1.12	0.59	1.62	7.75	9.26	0.68	26.17	0.00	0.00	0.65	40.63	23.44	0.49	2.60	3.07	2.92	0.00	11.66
3	326925	Transcript	0	3.64	0.00	3.64	5.53	6.89	0.88	0.29	0.23	0.42	0.20	0.16	1.10	0.94	0.19	3.30	2.55	0.00	3.74	1.04	0.19	0.56	1.20	1.22	0.80	0.58	0.23	1.30	0.88	0.69
4	395458	Transcript	0	0.00	0.00	0.00	0.00	6.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
5	451378	Transcript	0	0.00	0.00	3.59	0.00	0.00	0.00	0.00	0.00	4.20	0.00	0.00	0.00	0.00	0.00	7.97	0.00	1.15	4.62	0.00	0.00	0.00	3.79	0.00	2.93	0.00	0.00	0.00	0.00	1.78
6	428548	Transcript	0	0.88	9.47	6.67	0.00	17.29	10.84	6.40	6.06	5.35	7.05	2.24	8.00	6.50	2.72	4.28	10.57	9.07	6.58	8.25	1.98	19.38	2.55	5.21	7.97	2.61	1.20	1.72	9.59	5.13
7	395457	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	496152	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9	480392	Transcript	0	13.26	6.08	16.77	4.85	16.19	5.76	11.39	7.19	13.60	11.06	5.41	17.65	15.41	7.73	11.88	9.48	23.76	7.04	13.47	9.43	6.75	17.93	8.99	12.00	4.03	5.81	3.26	15.78	5.47
10	ER1a	ExonRegion	0	9.86	8.39	24.74	9.79	117.91	4.38	4.30	1.53	2.56	3.52	0.54	2.24	1.18	1.33	15.50	14.69	1.36	38.48	0.00	0.00	1.30	59.67	39.39	0.98	5.21	2.15	5.84	0.00	14.60
11	E1_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	2.23	2.24	1.40	0.00	0.00	1.27	0.00	0.00	0.00	0.00	4.01	0.00	0.00	0.00	0.00	2.33	2.12	0.00	0.00	0.00	0.00	0.00	0.00
12	E1a_E2h	KnownJunction	0	8.43	0.00	9.29	0.00	14.59	0.00	5.72	2.54	0.00	1.96	0.00	0.00	0.00	1.91	0.00	3.82	0.00	13.87	0.00	0.00	0.00	21.59	7.49	0.00	0.00	3.99	0.00	0.00	8.72
13	Ix	Intron	0	2.41	0.00	0.00	0.00	5.49	0.00	0.76	0.00	0.00	1.08	0.45	0.93	0.00	0.00	1.73	0.00	0.00	4.33	0.00	0.00	0.00	0.00	2.03	0.00	0.00	0.59	0.69	0.00	0.50
14	Ix_AR1	ActiveIntronRegion	0	2.45	0.00	0.00	0.00	5.58	0.00	0.77	0.00	0.00	1.10	0.45	0.94	0.00	0.00	1.76	0.00	0.00	4.40	0.00	0.00	0.00	0.00	2.06	0.00	0.00	0.60	0.70	0.00	0.51
15	E2_Aa	NovelBoundary	0	7.67	0.00	3.56	0.00	19.60	0.00	5.84	0.00	0.00	5.95	0.00	2.56	1.62	0.91	8.97	9.72	0.00	4.62	0.00	0.00	0.00	6.81	4.38	0.00	1.86	1.93	0.00	1.98	1.62
16	ER2a	ExonRegion	0	2.07	0.00	3.89	4.18	4.27	0.40	0.59	0.00	0.00	0.10	0.02	0.72	0.76	0.26	1.60	2.65	0.00	1.12	0.00	0.00	0.42	0.00	1.05	0.00	0.83	0.46	0.50	0.96	0.78
17	E2_Ab	KnownBoundary	0	2.71	0.00	1.54	0.00	0.00	0.00	2.46	0.00	0.00	1.68	0.00	0.00	0.00	0.00	0.00	10.79	1.15	9.25	0.00	0.00	0.00	2.48	1.97	0.00	0.00	0.00	0.00	2.11	0.00
18	ER2b	ExonRegion	0	5.97	0.02	3.09	0.00	0.23	1.64	0.48	1.32	0.54	2.04	0.55	2.10	1.39	0.85	7.43	4.41	0.00	6.89	1.04	2.26	2.04	3.27	2.97	2.39	1.06	0.37	1.51	2.32	1.66
19	E2_Da	KnownBoundary	0	0.00	0.00	8.55	0.00	0.00	0.00	0.00	0.00	0.00	4.07	0.00	1.17	0.00	0.00	15.35	0.00	0.00	4.62	8.09	7.44	0.00	2.48	0.00	0.00	0.00	0.00	2.53	0.00	1.55
20	E2a_E2h	KnownJunction	0	0.00	0.00	0.00	0.00	6.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.87	0.00	0.00	0.00	0.00	0.00
21	ER2c	ExonRegion	0	5.21	0.00	3.39	6.89	9.50	1.36	0.00	0.46	0.83	0.31	0.29	1.48	1.12	0.11	5.00	2.46	0.00	6.36	2.09	0.38	0.71	2.41	1.39	1.60	0.32	0.00	2.09	0.81	0.60
22	E2_Ac	KnownBoundary	0	2.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
23	ER2d	ExonRegion	0	4.17	0.00	1.25	6.50	0.97	1.30	2.24	0.00	0.59	0.76	0.00	0.79	0.69	0.63	2.33	3.23	0.11	4.32	0.25	0.00	0.00	1.85	1.16	0.00	0.00	2.97	0.00	0.00	0.00
24	E2_Ad	KnownBoundary	0	5.60	0.00	1.45	10.35	0.00	3.53	5.49	0.00	3.05	1.96	1.33	4.82	1.50	0.00	8.37	7.65	0.00	14.64	0.00	0.00	0.00	4.42	2.51	0.00	0.00	4.08	0.00	0.00	0.00
25	ER2e	ExonRegion	1	33.55	15.23	63.58	45.26	130.29	40.72	52.00	6.13	35.92	55.48	12.05	27.13	45.15	20.82	36.31	62.47	24.29	40.04	4.49	23.37	27.92	83.13	40.54	24.85	19.00	34.99	27.83	15.65	25.21
26	E2_Db	KnownBoundary	0	10.44	4.85	63.61	9.06	99.18	9.17	11.16	2.49	17.78	9.67	2.85	19.85	17.90	9.73	24.32	9.10	23.34	41.87	0.00	7.61	4.09	26.40	9.55	5.38	1.89	9.27	2.44	6.60	13.27
27	E2b_E2h	KnownJunction	0	0.00	0.00	3.59	0.00	0.00	0.00	0.00	0.00	4.20	0.00	0.00	0.00	0.00	0.00	7.97	0.00	1.15	4.62	0.00	0.00	0.00	3.79	0.00	2.93	0.00	0.00	0.00	0.00	1.78
28	ER2f	ExonRegion	0	36.03	25.40	55.49	22.32	56.89	33.65	38.36	7.42	26.91	52.83	12.25	33.34	52.70	24.77	26.53	48.70	29.20	49.51	5.84	37.34	16.69	94.08	40.16	33.58	24.91	30.60	18.08	14.93	25.60
29	E2_Ae	KnownBoundary	0	38.05	23.27	91.39	40.77	88.86	14.08	35.36	7.07	21.23	33.75	5.50	18.01	39.93	25.81	36.67	16.83	32.73	71.02	24.28	40.85	17.33	54.31	16.20	36.97	20.12	11.54	7.60	10.87	19.87
30	E2_Af	KnownBoundary	0	11.74	14.35	42.36	21.57	64.70	15.08	8.70	2.39	9.81	17.14	6.36	20.54	19.23	6.78	0.00	37.10	5.51	18.49	0.00	31.18	5.74	67.53	16.74	5.92	14.70	6.35	4.72	8.72	2.05
31	E2_Ag	KnownBoundary	1	93.26	44.02	172.59	134.38	813.05	44.66	105.50	34.24	81.28	42.90	28.00	251.59	165.43	35.96	23.72	61.89	70.61	41.61	24.28	135.87	28.64	219.07	134.40	68.07	32.05	90.33	79.02	285.81	54.93
32	ER2g	ExonRegion	0	67.81	36.13	161.78	100.05	354.82	32.12	54.52	24.44	48.06	41.67	10.71	114.69	96.54	35.95	26.22	60.39	53.82	83.74	32.30	100.80	19.58	172.82	67.56	46.05	30.21	42.51	33.63	93.43	33.13
33	ER2h	ExonRegion	1	106.10	59.54	273.65	204.75	851.84	49.32	122.20	44.19	104.07	60.46	40.17	367.20	236.42	51.47	55.31	106.61	112.69	119.74	57.70	176.72	27.64	324.72	164.55	68.84	39.13	99.21	107.37	307.26	93.11
34	ER2i	ExonRegion	0	141.34	82.88	688.67	442.56	971.60	117.62	382.25	69.13	229.02	249.30	128.61	668.46	655.35	96.98	130.61	257.98	383.35	217.57	92.82	133.45	66.14	354.42	464.49	101.28	57.17	237.76	215.50	607.22	313.85
35	E2_Dc	KnownBoundary	0	0.00	0.00	1.54	0.00	6.34	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.90	0.00	0.00	0.00	0.00	0.00	0.00	2.27	0.00	0.00	0.00	0.00	0.00
36	E2c_E2h	KnownJunction	0	56.51	56.52	170.82	78.30	155.18	50.61	139.09	39.32	60.84	107.77	22.24	101.38	140.62	66.20	91.29	77.72	104.49	79.76	40.46	71.04	21.42	174.15	97.32	85.06	44.52	78.79	29.12	116.10	62.13
37	ER2j	ExonRegion	0	3.67	0.55	4.24	3.28	6.34	1.54	2.79	0.35	1.01	2.84	1.67	2.24	3.25	1.62	2.46	1.88	3.35	3.82	6.19	2.11	2.01	5.19	1.52	2.41	0.32	0.93	1.57	1.68	1.00
38	E2_Ah	KnownBoundary	0	2.89	0.00	1.27	0.00	5.75	1.69	0.00	0.00	1.25	1.84	0.00	1.87	3.79	1.93	0.00	10.79	0.00	9.25	8.09	7.53	6.06	0.00	0.00	0.00	0.00	2.19	2.14	6.60	0.00
39	ER2k	ExonRegion	0	269.11	161.05	289.94	112.39	338.43	154.63	462.12	192.70	314.67	360.02	151.81	606.54	690.51	165.90	194.42	257.91	337.15	300.76	172.62	290.16	96.78	605.28	430.21	268.40	111.84	209.35	149.03	449.36	265.34
40	E2_Dd	NovelBoundary	0	2.60	0.00	6.88	0.00	41.26	1.96	0.00	0.00	6.30	4.75	0.00	1.42	0.00	0.95	0.00	0.00	7.97	0.00	0.00	0.00	2.05	0.00	2.36	3.05	1.93	5.54	0.00	0.00	0.00
41	E2d_E3a	KnownJunction	1	399.51	183.82	539.83	253.44	595.82	169.85	489.42	282.67	400.63	442.92	372.09	1067.54	931.83	253.45	309.54	201.27	582.92	259.94	185.90	339.73	101.24	804.18	919.05	460.76	137.18	481.37	564.81	1198.19	434.85
42	I2	Intron	0	1.34	0.00	4.19	0.00	1.53	0.86	0.63	2.88	1.76	4.07	0.74	2.70	0.00	0.99	0.00	1.55	1.87	1.81	4.00	2.59	0.89	1.13	1.13	2.69	0.45	0.00	0.57	3.57	0.42
43	I2_SR1	SilentIntronRegion	0	0.79	0.00	3.95	0.00	0.00	1.49	0.00	4.00	1.87	5.48	0.22	3.72	0.00	1.23	0.00	1.38	1.25	1.07	7.08	2.69	1.46	1.55	1.53	3.90	0.78	0.00	0.96	2.92	0.18
44	I2_AR1	ActiveIntronRegion	0	4.29	0.00	8.98	0.00	0.00	0.00	1.57	1.02	0.00	4.97	1.85	2.61	0.00	0.91	0.00	1.97	3.01	0.00	0.00	2.81	1.27	1.80	1.81	2.15	0.16	0.00	0.00	5.98	1.34
45	I2_SR2	SilentIntronRegion	0	4.29	0.00	7.20	0.00	4.72	0.00	2.02	1.84	1.48	4.10	2.38	2.21	0.00	0.91	0.00	2.53	3.01	0.72	0.00	2.66	0.00	1.04	1.43	2.15	0.00	0.00	0.00	6.52	1.34
46	I2_SR3	SilentIntronRegion	0	0.13	0.00	2.18	0.00	4.08	0.00	1.22	1.45	2.25	0.88	0.83	0.75	0.00	0.55	0.00	1.46	2.67	4.71	0.00	2.56	0.00	0.00	0.00	0.26	0.00	0.00	0.00	3.11	0.24
47	E3_Aa	NovelBoundary	0	2.83	3.49	5.78	0.00	0.00	0.00	0.00	0.00	4.35	9.11	0.00	3.19	0.00	2.73	0.00	0.00	8.49	4.62	8.09	0.00	6.14	0.00	7.04	5.98	1.70	1.59	0.00	6.60	0.00
48	ER3a	ExonRegion	0	374.50	317.80	815.71	273.73	1001.44	205.28	486.34	337.17	386.49	501.64	286.89	924.65	808.39	279.02	253.11	255.49	494.46	334.02	276.08	466.95	141.43	840.13	651.57	515.31	185.92	307.64	430.74	843.02	271.14
49	E3_Da	KnownBoundary	0	5.72	0.00	20.36	0.00	0.00	1.50	2.46	4.58	2.71	3.48	2.97	9.25	0.00	3.43	9.97	10.71	20.69	4.62	8.09	0.00	1.52	14.00	0.00	2.51	0.00	0.00	0.00	8.45	2.01
50	E3a_E3b	KnownJunction	0	366.48	328.57	1111.16	266.60	1284.64	229.86	603.56	298.60	379.59	512.38	222.39	693.39	827.38	259.56	192.74	232.79	423.58	346.25	202.31	447.24	158.28	730.77	509.24	512.44	178.06	239.38	178.71	568.52	205.91
51	E3a_E3c	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00
52	ER3b	ExonRegion	0	12.66	5.17	27.83	3.11	17.80	4.34	8.01	8.56	10.48	10.28	3.70	13.12	12.89	7.07	9.90	9.98	22.91	5.99	16.64	8.98	4.38	17.36	5.81	10.82	2.04	3.00	4.53	13.84	5.31
53	E3_Ab	KnownBoundary	0	14.27	0.00	7.10	8.20	6.19	1.92	2.57	2.14	7.10	9.75	3.07	3.10	6.97	2.50	0.00	3.29	13.96	4.62	8.09	7.19	1.89	9.04	4.43	8.43	3.64	0.00	0.00	11.46	13.70
54	ER3c	ExonRegion	0	432.00	344.39	652.32	404.90	950.33	291.17	800.29	395.26	678.12	577.18	276.62	1009.48	1063.84	308.15	273.87	303.41	532.69	411.78	274.45	539.09	230.02	928.27	555.79	529.53	205.24	365.61	281.32	857.68	295.76
55	E3_Db	KnownBoundary	0	11.27	0.00	4.11	0.00	0.00	3.61	2.92	5.08	6.00	2.04	1.46	2.68	1.31	2.33	7.57	3.75	12.52	4.62	8.09	4.13	5.37	4.47	2.51	2.27	0.00	2.02	0.00	7.82	1.35
56	E3b_E3c	KnownJunction	0	483.56	427.16	209.88	522.19	999.77	303.72	1036.96	411.12	935.20	703.20	353.45	1185.43	1287.40	303.41	489.13	330.32	606.83	376.69	363.49	486.44	196.46	1054.32	625.87	573.81	250.42	467.16	159.33	785.54	390.05
57	ER3d	ExonRegion	0	13.85	6.98	5.71	6.58	14.57	7.18	14.77	5.82	16.73	11.84	7.11	22.17	17.93	8.38	13.86	8.98	24.62	8.09	10.30	9.87	9.11	18.50	12.16	13.18	6.02	8.62	1.99	17.73	5.64
58	E3_Ac	KnownBoundary	0	8.91	0.00	0.97	0.00	0.00	5.83	0.00	1.94	4.23	7.15	0.00	11.36	3.28	7.71	0.00	5.81	11.07	0.00	8.09	3.47	5.01	4.96	4.48	8.02	7.20	2.06	0.00	1.75	1.65
59	ER3e	ExonRegion	0	397.13	443.30	173.84	246.92	424.84	242.32	470.53	373.77	637.43	460.00	209.07	615.82	762.13	241.36	224.16	238.29	338.87	324.88	318.66	458.44	171.65	1037.69	398.63	686.27	237.56	242.31	106.47	353.54	227.18
60	E3_Dc	KnownBoundary	0	103.76	165.59	164.96	138.04	138.23	68.83	163.00	62.01	426.03	61.12	47.86	555.71	488.05	138.15	52.22	124.77	272.45	120.21	72.83	129.01	55.59	356.56	210.35	116.94	27.24	32.83	41.99	101.95	131.53
61	ER3f	ExonRegion	0	273.09	262.20	359.53	217.47	548.73	189.31	529.52	212.64	568.42	394.74	290.27	774.55	786.49	138.57	148.59	138.19	362.93	189.22	160.69	259.11	154.86	605.59	344.06	498.85	247.53	329.15	373.12	831.45	228.80
62	E3_Dd	KnownBoundary	0	8.26	3.59	17.14	28.04	36.84	4.41	20.65	11.60	6.88	14.70	15.88	12.20	17.48	17.17	8.57	13.31	14.02	0.00	8.09	10.50	10.63	14.97	22.61	2.57	4.85	1.63	20.38	24.67	5.35
63	E3_De	KnownBoundary	1	7.61	3.97	26.06	8.63	5.89	3.72	2.92	4.53	9.84	33.11	10.22	13.22	6.53	11.48	0.00	2.91	18.44	0.00	0.00	11.50	5.78	1.94	7.24	12.92	6.90	2.06	11.78	19.95	1.35
64	ER3g	ExonRegion	0	51.44	36.13	72.93	51.19	119.56	19.25	58.46	34.98	38.20	82.30	57.13	72.98	61.05	38.10	11.20	35.43	49.08	19.10	27.15	47.78	32.81	63.10	45.21	60.23	32.87	31.43	78.76	79.87	30.87
65	ER3h	ExonRegion	0	25.06	28.56	46.96	17.92	51.82	25.49	26.52	18.34	23.01	53.00	38.68	24.85	37.85	20.50	15.40	27.10	36.15	26.94	29.59	26.61	33.57	15.59	31.97	29.13	15.45	17.04	31.69	45.11	15.75
66	ER3i	ExonRegion	0	0.88	9.47	6.67	0.00	17.29	10.84	6.40	6.06	5.35	7.05	2.24	8.00	6.50	2.72	4.28	10.57	9.07	6.58	8.25	1.98	19.38	2.55	5.21	7.97	2.61	1.20	1.72	9.59	5.13
67	IG33	Intergenic	0	10.38	21.67	26.09	4.82	24.97	17.39	13.56	9.17	17.28	30.89	16.82	12.69	15.41	22.40	10.64	19.81	23.30	10.80	17.20	9.86	13.82	16.98	12.65	15.34	11.54	8.88	26.62	30.49	5.67
68	IG33_AR1	ActiveIntergenicRegion	0	10.75	22.44	27.02	4.99	25.86	18.01	14.04	9.49	17.89	31.99	17.41	13.14	15.96	23.19	11.02	20.50	24.13	11.19	17.79	10.21	14.31	17.58	13.10	15.89	11.95	9.20	27.56	31.57	5.87