Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SPCS1	Gene	0	269.00	268.80	218.81	345.82	2286.24	305.84	969.38	378.98	291.73	437.56	355.73	344.82	371.86	156.00	374.61	251.49	217.16	207.17	428.94	324.96	244.54	303.54	186.76	312.73	245.55	126.18	301.43	133.82	221.79
2	423431	Transcript	0	3.47	2.42	1.25	0.88	3.06	1.04	2.09	1.87	1.35	1.65	0.75	2.09	0.33	0.80	0.59	1.48	3.55	1.69	1.22	0.01	1.27	0.50	2.68	2.71	2.69	0.61	0.24	1.83	1.18
3	233025	Transcript	0	1.21	0.98	2.49	3.64	67.48	0.90	3.87	0.88	0.59	1.82	0.48	2.11	1.86	0.76	0.83	1.97	0.68	1.40	1.37	2.25	1.30	3.60	1.66	1.02	0.26	1.00	2.86	1.65	0.74
4	448693	Transcript	0	11.01	5.44	8.23	4.34	14.83	12.21	26.41	8.99	8.76	11.84	2.48	5.72	0.98	5.81	13.60	14.76	16.94	8.57	6.14	11.24	5.45	1.65	1.10	12.33	5.09	2.38	1.11	2.68	4.05
5	426887	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	474945	Transcript	0	18.41	6.65	15.24	7.27	227.54	13.35	20.26	15.41	5.28	14.23	14.19	10.66	11.53	7.35	17.99	14.48	18.68	6.17	16.77	21.54	6.60	22.09	4.31	13.21	11.96	9.81	5.87	6.57	3.24
7	ER1a	ExonRegion	0	6.93	4.85	2.50	1.76	6.13	2.09	4.18	3.75	2.70	3.30	1.49	4.18	0.67	1.60	1.18	2.96	7.10	3.38	2.44	0.03	2.53	1.01	1.13	5.42	5.38	1.22	0.48	3.67	2.37
8	E1_Da	NovelBoundary	0	0.00	9.50	1.35	0.00	11.94	3.11	17.05	2.54	0.00	9.59	0.00	1.66	0.00	2.13	0.00	3.06	2.27	4.62	0.00	6.29	2.05	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
9	E1a_E2e	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.24	0.00	0.00	0.00	0.00	0.00	0.00
10	Ix	Intron	0	4.93	2.28	1.18	0.00	13.84	2.92	5.00	3.59	2.58	5.88	1.48	2.83	0.23	0.16	1.79	3.95	2.91	2.73	4.53	1.33	1.01	0.96	0.64	1.52	3.80	1.39	0.65	4.04	1.66
11	Ix_AR1	ActiveIntronRegion	0	4.96	2.30	1.19	0.00	13.93	2.94	5.03	3.61	2.60	5.92	1.49	2.85	0.23	0.16	1.80	3.98	2.93	2.75	4.56	1.34	1.02	0.96	0.64	1.53	3.82	1.40	0.65	4.07	1.67
12	E2_Aa	NovelBoundary	0	13.74	8.53	9.84	10.78	138.97	7.60	16.71	4.58	1.55	9.71	4.81	2.65	1.37	4.01	7.57	6.66	3.65	13.87	0.00	12.40	5.58	22.66	13.84	25.42	3.49	4.38	4.57	4.27	4.79
13	ER2a	ExonRegion	0	1.21	0.98	2.49	3.64	67.48	0.90	3.87	0.88	0.59	1.82	0.48	2.11	1.86	0.76	0.83	1.97	0.68	1.40	1.37	2.25	1.30	3.60	1.66	1.02	0.26	1.00	2.86	1.65	0.74
14	E2_Ab	KnownBoundary	0	0.00	0.00	1.49	0.00	6.04	0.00	2.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	2.39	0.00	0.00
15	E2_Ac	KnownBoundary	0	102.52	3.97	1.42	43.57	797.72	7.67	24.95	28.37	9.90	12.42	6.39	6.48	6.66	4.83	16.34	18.82	1.37	5.14	0.00	46.48	13.12	153.05	10.98	19.50	1.52	5.32	6.11	9.21	1.35
16	ER2b	ExonRegion	0	120.03	39.42	136.89	511.89	6042.62	35.74	205.61	128.88	58.42	135.71	47.60	165.74	164.97	42.63	100.81	199.93	58.10	155.56	45.26	193.94	54.20	205.51	83.18	73.14	54.31	75.44	111.72	86.39	120.80
17	ER2c	ExonRegion	1	616.41	257.52	881.98	2328.53	18658.61	291.43	1186.91	703.29	263.28	648.78	270.66	697.68	527.75	185.92	491.33	719.26	366.18	595.54	472.74	600.12	385.12	787.36	497.49	332.32	315.75	315.95	547.41	405.39	422.09
18	E2_Ad	KnownBoundary	1	1311.78	540.79	1608.78	5024.76	37960.82	620.71	2564.31	1383.09	534.17	1309.58	591.03	1294.19	948.23	332.06	1140.51	1397.17	705.44	1110.92	1043.03	1089.07	801.69	1455.16	999.13	660.30	682.65	647.19	1192.24	858.69	802.00
19	ER2d	ExonRegion	1	542.01	170.77	1161.83	1403.19	9167.98	249.20	1249.36	712.95	243.80	512.76	268.31	678.37	545.57	187.13	432.46	335.51	436.20	283.48	313.91	395.52	236.33	709.67	477.78	290.30	256.61	327.79	467.11	333.17	512.74
20	E2_Da	KnownBoundary	0	12.62	0.00	0.00	0.00	0.00	1.76	2.35	0.00	1.25	2.04	0.00	3.31	2.55	0.00	16.14	3.67	1.87	0.00	8.09	8.10	4.05	21.00	0.00	18.66	4.58	0.00	0.00	11.01	0.00
21	E2a_E2e	KnownJunction	0	1142.02	237.24	84.24	160.69	909.87	277.51	1492.28	1723.24	394.97	503.23	247.19	483.58	743.41	390.13	574.24	216.87	218.32	356.01	258.96	1155.64	195.06	1544.52	262.50	672.09	479.40	272.16	156.55	199.63	437.10
22	ER2e	ExonRegion	0	18.41	6.65	15.24	7.27	227.54	13.35	20.26	15.41	5.28	14.23	14.19	10.66	11.53	7.35	17.99	14.48	18.68	6.17	16.77	21.54	6.60	22.09	4.31	13.21	11.96	9.81	5.87	6.57	3.24
23	E2_Ae	KnownBoundary	0	8.14	7.47	20.36	18.98	41.85	36.18	42.57	26.03	1.80	32.40	25.53	14.49	14.46	11.85	58.80	3.06	29.22	5.39	16.18	33.58	9.67	27.08	6.25	5.08	18.53	22.79	2.34	16.71	3.50
24	ER2f	ExonRegion	0	1569.93	873.17	126.39	307.50	1445.07	1035.78	2786.76	2430.88	896.72	1588.32	750.62	851.21	1335.54	549.92	1290.89	1169.03	482.92	967.28	1265.01	1548.25	1054.51	1904.15	635.53	1231.62	1288.58	607.55	490.66	335.32	888.61
25	E2_Db	NovelBoundary	0	25.78	8.63	4.43	0.00	0.00	22.48	38.28	12.09	13.89	23.21	7.69	14.40	0.00	12.94	15.75	74.89	63.18	13.87	0.00	4.05	26.43	4.96	2.27	8.97	7.50	12.79	2.14	1.98	11.22
26	E2b_E3a	KnownJunction	0	1255.62	1212.37	142.56	367.11	1876.19	1208.04	4378.25	1749.57	1082.71	2425.38	1213.82	1243.98	1398.25	577.40	1759.39	1604.64	708.93	1206.47	2175.75	1380.58	1120.60	1471.26	983.52	1623.33	1492.11	695.30	915.78	509.16	1098.06
27	E2b_E4a	NovelJunction	1	0.00	4.85	1.02	0.00	0.00	18.99	65.97	9.36	10.26	9.23	12.34	5.84	10.29	5.65	0.00	18.51	4.50	0.00	16.18	7.36	7.02	19.79	9.46	2.39	5.49	8.37	0.00	17.52	7.33
28	I2	Intron	0	2.46	0.00	2.87	8.22	0.00	2.36	3.47	2.11	1.93	3.31	0.68	0.00	0.74	3.11	5.79	7.11	0.86	2.21	5.49	1.58	0.00	0.00	1.04	1.23	1.64	2.70	0.00	0.00	0.00
29	I2_AR1	ActiveIntronRegion	0	2.51	0.00	2.94	8.41	0.00	2.42	3.54	2.16	1.96	3.37	0.70	0.00	0.76	3.18	5.92	7.21	0.88	2.26	5.62	1.62	0.00	0.00	1.06	1.26	1.68	2.76	0.00	0.00	0.00
30	E3_Aa	NovelBoundary	0	11.44	0.00	6.78	0.00	6.63	10.55	9.27	6.92	6.18	7.27	10.44	1.42	2.67	4.28	15.95	3.82	16.52	4.62	16.18	18.61	1.89	1.85	0.00	4.67	1.74	8.75	0.00	6.25	0.00
31	ER3a	ExonRegion	0	1021.06	727.81	303.91	440.69	5271.34	772.95	3489.70	1769.85	766.43	1769.04	1268.57	1539.69	1467.89	583.64	1162.35	799.45	958.98	686.40	1333.25	1034.72	597.33	1192.58	1104.18	1073.05	898.00	704.31	1605.41	804.17	1131.14
32	E3_Da	KnownBoundary	0	13.51	0.00	6.53	0.00	0.00	13.16	4.86	4.88	1.80	9.15	1.61	5.96	0.00	7.00	15.95	17.44	13.37	9.25	0.00	21.17	3.85	0.00	0.00	17.65	4.96	12.40	0.00	2.07	0.00
33	E3a_E4a	KnownJunction	1	1046.22	590.91	594.77	871.18	18866.34	962.49	3788.76	1927.43	990.99	1594.39	1113.13	1517.17	1446.85	607.60	972.28	549.03	1013.14	585.26	1367.40	1195.33	615.37	1224.86	963.77	956.09	826.01	681.22	2022.94	987.23	1083.44
34	ER3b	ExonRegion	0	11.01	5.44	8.23	4.34	14.83	12.21	26.41	8.99	8.76	11.84	2.48	5.72	0.98	5.81	13.60	14.76	16.94	8.57	6.14	11.24	5.45	1.65	1.10	12.33	5.09	2.38	1.11	2.68	4.05
35	E3_Db	NovelBoundary	0	8.97	4.75	10.89	0.00	28.00	14.04	18.59	12.09	12.06	7.83	6.80	2.62	0.00	5.85	0.00	7.04	22.04	9.25	0.00	0.00	5.94	6.81	0.00	5.02	5.46	0.00	11.43	3.82	0.00
36	I3	Intron	0	4.62	4.63	2.40	6.87	1.17	8.89	9.65	4.85	6.44	3.80	1.14	5.76	2.17	2.60	6.63	9.60	9.29	6.00	9.18	3.59	4.78	1.73	1.30	6.18	1.37	0.00	2.63	0.78	0.64
37	I3_AR1	ActiveIntronRegion	0	2.98	4.48	3.10	9.97	0.00	7.65	10.28	1.71	5.46	2.66	0.00	3.15	1.79	1.89	4.28	5.11	10.99	4.47	10.37	3.48	3.97	2.51	0.84	4.99	0.66	0.00	0.00	0.76	0.00
38	I3_AR2	ActiveIntronRegion	0	6.43	4.83	1.67	3.58	2.44	10.31	9.07	8.28	7.56	5.05	2.38	8.63	2.59	3.40	9.22	14.54	7.52	7.71	7.99	3.72	5.71	0.90	1.81	7.53	2.14	0.00	5.49	0.82	1.34
39	E4_Aa	NovelBoundary	0	17.93	18.81	8.30	0.00	12.67	30.27	44.51	0.00	13.31	18.49	0.00	4.22	2.48	7.91	27.90	6.88	28.63	4.62	24.28	7.11	4.09	2.14	1.92	7.78	0.00	4.21	18.74	2.29	0.00
40	ER4a	ExonRegion	0	940.56	1247.05	806.06	1252.37	7583.55	1462.83	4250.08	1303.06	1296.32	1876.02	1735.09	1337.61	1525.37	671.18	1571.43	981.16	830.19	797.95	1966.49	1296.76	1096.40	999.83	607.57	1357.12	1030.39	386.03	1214.09	442.67	755.76
41	E4_Da	KnownBoundary	0	438.08	1037.76	198.62	509.90	2851.93	694.34	1884.37	444.86	1509.10	995.96	981.97	780.92	1054.33	406.57	1435.30	617.34	452.39	527.33	1561.40	995.20	494.36	434.25	273.98	966.38	532.14	140.59	814.14	187.23	478.23
42	ER4b	ExonRegion	0	185.30	437.84	60.52	410.73	1911.11	322.22	1089.89	166.70	589.30	343.42	348.08	377.08	418.81	147.17	620.29	282.84	221.26	256.34	646.34	422.27	300.32	193.36	113.63	367.96	173.01	61.42	334.83	82.51	201.45
43	ER4c	ExonRegion	1	31.44	72.63	12.97	121.88	754.98	88.28	236.51	30.07	158.17	48.77	17.19	59.37	32.48	18.64	164.28	45.27	27.83	65.80	131.25	81.82	66.72	23.44	17.88	37.53	16.20	9.43	21.98	9.78	21.47
44	IG4	Intergenic	0	3.30	17.08	5.76	5.32	14.75	19.82	9.30	6.25	21.52	26.87	18.36	12.43	17.98	8.58	16.58	16.69	14.09	8.22	33.03	10.86	19.28	5.54	11.79	28.85	10.61	12.66	47.38	32.24	11.46
45	IG4_AR1	ActiveIntergenicRegion	0	8.51	0.00	0.00	4.63	13.89	5.87	7.10	3.71	9.49	4.86	6.84	2.93	0.81	1.76	0.00	16.65	2.93	0.00	13.70	9.66	2.95	1.29	1.30	10.03	2.05	5.09	9.65	5.37	0.00
46	IG4_SR2	SilentIntergenicRegion	0	0.00	19.13	0.95	6.91	19.32	5.85	14.69	4.42	18.83	17.81	8.32	7.44	12.12	2.85	13.88	14.76	8.05	4.49	27.31	11.43	8.59	0.74	5.67	10.01	4.43	3.23	9.48	3.35	6.52
47	IG4_AR2	ActiveIntergenicRegion	0	3.02	20.51	3.75	7.29	17.00	18.60	9.05	5.82	23.33	23.66	18.79	13.54	18.67	8.09	17.05	17.69	16.21	9.47	31.76	11.46	16.66	4.96	11.37	28.89	8.02	14.33	50.27	29.44	12.72
48	IG4_SR3	SilentIntergenicRegion	0	0.00	4.81	2.24	9.63	20.05	19.55	5.70	5.30	20.55	17.85	18.69	9.14	14.61	4.47	4.23	15.62	4.47	5.19	25.28	8.91	20.32	3.87	6.35	36.04	8.33	13.03	41.14	32.80	10.67
49	IG4_SR4	SilentIntergenicRegion	0	4.46	20.75	12.32	3.45	13.11	32.39	10.69	9.06	27.18	44.60	26.94	16.99	27.13	14.68	25.15	18.88	19.76	11.41	47.07	13.03	31.29	9.49	18.51	44.08	19.37	17.24	73.75	55.46	16.08
50	IG4_AR4	ActiveIntergenicRegion	0	0.71	25.73	6.73	0.00	16.61	15.12	8.06	5.52	23.78	24.06	14.28	21.23	10.39	8.62	22.40	26.15	16.36	16.38	54.31	5.62	35.42	8.11	23.21	10.76	14.29	14.14	32.97	33.69	16.11
51	IG4_AR5	ActiveIntergenicRegion	0	0.00	15.77	0.00	0.00	9.96	10.45	10.08	3.68	10.79	11.55	8.81	13.61	2.86	0.00	10.08	12.65	7.41	3.27	19.91	0.00	32.52	11.54	18.08	2.58	8.86	10.06	20.51	16.30	6.98