Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	TUSC2	Gene	0	101.77	89.13	219.47	51.67	229.11	100.71	427.15	149.86	132.66	211.48	113.45	193.79	129.16	76.96	180.15	128.00	147.70	82.64	106.86	181.54	86.74	173.90	97.63	114.73	85.68	78.12	93.18	91.05	73.22
2	421918	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	0.00
3	232496	Transcript	0	108.82	141.81	291.02	60.09	237.69	142.29	565.53	208.03	212.31	315.49	181.48	283.71	178.92	112.45	238.58	184.34	219.12	104.89	155.90	242.82	124.89	218.62	122.10	173.56	121.23	96.47	132.85	127.82	101.09
4	463304	Transcript	0	13.33	4.65	26.73	0.00	55.56	16.04	55.21	19.71	19.25	14.10	10.66	12.44	4.55	12.85	71.36	11.47	10.13	18.49	40.46	11.50	10.03	17.06	4.97	19.20	8.87	23.09	18.39	13.57	11.75
5	454201	Transcript	0	0.00	0.00	1.49	0.00	0.00	1.50	9.33	6.87	0.00	5.51	7.59	4.58	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00
6	417867	Transcript	0	1.80	0.00	1.88	0.00	4.70	2.70	3.44	1.53	1.82	4.95	4.08	1.17	2.18	0.30	0.00	1.27	3.68	3.64	14.70	1.25	2.55	0.80	2.24	0.24	1.20	0.35	0.31	1.18	0.22
7	462137	Transcript	0	0.00	0.00	0.08	0.00	0.00	0.07	0.00	0.00	0.06	0.00	0.00	0.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.01	0.00	0.00	0.00	0.22	0.00	0.00	0.00	0.00	0.00
8	IG19_AR1	ActiveIntergenicRegion	0	0.00	0.00	1.12	0.00	0.00	0.00	1.44	0.00	0.00	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.00	0.00
10	ER1b	ExonRegion	0	1.29	0.00	0.90	0.00	4.98	0.00	3.23	0.00	0.00	0.00	1.90	0.00	0.78	0.00	5.60	0.00	1.80	1.64	4.53	0.00	0.00	2.16	0.00	1.72	2.86	0.00	1.47	0.33	1.34
11	E1_Ad	KnownBoundary	0	14.10	16.58	14.97	10.78	62.63	5.87	49.89	2.54	7.40	25.45	16.83	6.90	19.46	4.52	53.62	11.09	6.69	46.11	8.09	30.76	8.14	25.57	19.55	15.01	12.77	14.33	27.13	9.08	13.11
12	ER1c	ExonRegion	0	26.19	8.31	23.88	16.91	55.26	8.33	92.60	9.38	3.83	26.94	11.90	13.41	18.27	3.71	51.28	29.66	7.76	48.95	16.26	36.19	14.84	34.98	25.20	12.64	7.37	10.61	15.11	9.37	10.86
13	E1_Ae	KnownBoundary	0	93.90	9.02	131.50	69.67	319.80	41.25	328.13	50.51	20.74	84.64	19.61	62.26	53.53	10.28	134.34	118.57	57.83	88.10	16.18	88.65	56.07	112.79	87.07	14.24	13.56	35.75	29.07	42.60	33.51
14	ER1d	ExonRegion	0	57.29	16.42	65.08	55.84	159.41	30.24	257.65	34.65	11.24	66.41	21.21	42.28	39.32	7.42	120.16	97.78	28.41	144.15	27.15	102.21	43.05	82.43	66.58	19.36	12.47	31.43	34.80	25.93	21.23
15	ER1e	ExonRegion	0	141.19	36.83	315.24	184.36	654.42	98.76	556.61	89.10	57.18	152.39	38.84	196.40	114.55	24.90	207.37	222.37	107.71	180.70	142.09	214.28	120.68	174.96	195.67	20.61	41.98	93.55	117.70	107.84	74.95
16	E1_Af	KnownBoundary	0	236.77	68.54	579.82	335.62	1286.70	154.62	776.69	142.98	152.26	241.27	68.84	316.80	166.67	44.56	369.74	309.97	183.07	139.60	186.13	288.12	178.65	263.41	321.75	32.18	84.86	154.10	216.23	192.13	123.47
17	ER1f	ExonRegion	0	172.95	58.21	212.43	53.31	227.97	94.69	445.57	140.20	82.45	172.31	55.50	149.43	132.46	58.77	260.80	149.26	112.00	111.64	93.91	221.88	89.21	246.26	115.56	60.36	80.54	107.92	58.54	86.58	79.33
18	E1_Da	NovelBoundary	0	4.54	4.75	2.57	0.00	0.00	1.88	0.00	0.00	0.00	5.11	0.00	2.83	0.00	0.00	0.00	3.67	6.10	0.00	0.00	0.00	0.00	0.00	2.51	0.00	1.52	0.00	0.00	0.00	0.00
19	E1a_E2a	KnownJunction	0	2.54	0.00	0.97	0.00	0.00	3.53	2.92	0.00	1.52	5.95	6.30	0.00	3.95	0.00	0.00	0.00	2.18	0.00	16.18	0.00	4.09	0.00	2.51	0.00	1.93	0.00	0.00	0.00	0.00
20	E1a_E2b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	2.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	0.00	2.31	0.00	1.55	0.00	0.00	0.00	1.62
21	E1a_E3a	KnownJunction	0	138.38	98.70	116.75	0.00	111.85	156.19	1357.02	161.14	138.95	650.23	192.40	334.09	270.04	103.80	635.63	309.13	297.05	183.53	298.75	205.26	70.96	183.48	285.01	146.97	181.32	256.71	99.25	199.09	181.08
22	I1	Intron	0	8.55	3.32	5.15	1.50	3.42	4.42	4.94	2.45	3.77	6.26	1.50	6.04	1.09	3.00	3.01	9.05	7.52	8.02	2.68	3.22	2.99	0.88	0.76	4.81	1.70	0.66	0.51	2.39	0.70
23	I1_AR1	ActiveIntronRegion	0	8.79	2.97	4.50	1.97	4.02	3.82	4.52	1.11	4.08	5.79	1.96	6.10	0.55	2.00	1.39	6.90	6.95	8.63	1.75	3.05	2.40	0.80	1.03	2.86	2.08	0.22	0.19	1.54	0.18
24	I1_SR1	SilentIntronRegion	0	8.34	3.70	5.85	1.03	2.81	5.07	5.40	3.86	3.46	6.79	1.03	6.02	1.65	4.08	4.73	11.36	8.15	7.43	3.67	3.42	3.63	0.97	0.48	6.88	1.31	1.13	0.86	3.30	1.25
25	E2_Aa	NovelBoundary	0	3.01	0.00	1.20	0.00	0.00	3.41	0.00	2.49	1.37	0.00	0.00	1.42	1.62	2.75	0.00	6.88	5.78	0.00	0.00	8.10	0.00	0.00	2.51	2.45	0.00	0.00	0.00	5.80	0.00
26	E2_Ab	NovelBoundary	0	0.00	0.00	0.97	0.00	0.00	0.00	5.61	2.44	1.55	0.00	3.23	5.00	0.00	3.06	0.00	0.00	9.34	4.62	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.50
27	ER2a	ExonRegion	0	2.86	0.00	1.31	0.00	4.15	4.58	5.38	4.60	1.69	7.46	4.76	1.03	2.60	0.91	0.00	3.80	7.85	10.92	23.38	3.75	3.57	2.40	4.22	0.72	1.67	1.05	0.92	1.90	0.67
28	ER2b	ExonRegion	0	6.17	7.93	5.31	0.24	3.99	3.25	8.44	8.13	5.23	10.91	6.10	11.45	2.21	6.17	1.55	8.38	14.24	8.75	14.15	6.89	5.52	2.09	2.74	4.85	5.72	1.35	2.05	3.61	4.26
29	E2_Da	NovelBoundary	0	3.01	4.85	2.52	0.00	0.00	5.41	2.46	0.00	3.78	2.04	1.39	5.93	2.87	4.94	0.00	7.65	2.48	9.25	0.00	4.13	3.45	0.00	0.00	8.67	3.11	0.00	0.00	4.58	0.00
30	E2a_E3a	KnownJunction	0	0.00	0.00	1.49	0.00	0.00	1.50	9.33	6.87	0.00	5.51	7.59	4.58	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	2.22	0.00	0.00	0.00	0.00	0.00	0.00
31	E2_Db	NovelBoundary	0	3.01	4.85	2.52	0.00	6.19	1.76	4.46	2.54	5.12	3.99	1.46	3.16	0.00	3.19	0.00	17.82	21.07	13.87	0.00	0.00	0.00	0.00	0.00	0.00	5.04	0.00	0.00	0.00	0.00
32	E2b_E3a	KnownJunction	0	0.00	0.00	1.54	0.00	0.00	0.00	2.92	0.00	3.11	0.00	0.00	3.07	1.97	2.19	0.00	0.00	1.33	0.00	8.09	0.00	1.89	4.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	ER2c	ExonRegion	0	0.00	0.00	2.02	0.00	1.00	0.27	4.84	0.00	3.48	1.44	0.12	3.59	1.56	3.81	0.00	0.00	2.91	4.09	5.43	0.84	4.56	3.61	0.90	0.00	3.14	0.00	0.37	0.16	0.40
34	I2	Intron	0	5.33	4.01	4.16	1.49	5.06	2.56	4.60	3.82	1.98	4.19	2.96	3.71	0.40	3.28	3.05	5.00	5.57	5.72	4.64	0.57	1.18	0.00	1.12	3.57	1.78	0.98	1.14	2.37	0.41
35	I2_SR1	SilentIntronRegion	0	3.33	6.32	4.78	2.81	7.24	1.82	3.92	5.34	0.87	4.78	1.88	3.38	0.14	4.52	3.62	4.34	6.10	6.76	5.81	1.08	1.12	0.00	1.42	4.29	1.68	0.11	0.08	3.20	0.78
36	I2_AR1	ActiveIntronRegion	0	7.04	0.00	3.21	0.00	9.96	7.07	10.94	1.84	0.80	4.33	7.14	2.12	1.30	1.81	0.00	9.76	2.00	5.46	4.53	0.00	0.00	0.00	0.00	2.15	0.82	1.57	3.66	0.23	0.00
37	I2_SR2	SilentIntronRegion	0	7.75	1.54	3.54	0.00	2.19	3.22	5.09	2.17	3.42	3.54	4.06	4.29	0.67	1.93	2.62	5.58	5.26	4.57	3.30	0.00	1.36	0.00	0.86	2.85	1.99	2.01	2.28	1.54	0.00
38	E3_Aa	NovelBoundary	0	13.04	0.00	6.10	0.00	13.12	3.49	8.01	4.18	4.02	11.78	0.00	13.64	0.00	2.10	9.17	13.39	15.15	0.00	16.18	0.00	0.00	0.00	0.00	11.60	0.00	3.95	0.00	4.22	4.19
39	ER3a	ExonRegion	0	293.93	117.62	264.52	42.38	371.79	199.55	1005.77	293.88	211.32	400.62	205.52	422.71	301.61	147.66	409.45	194.29	303.68	152.80	188.04	308.30	137.62	351.82	315.90	211.95	172.66	226.06	304.86	237.25	208.34
40	E3_Da	NovelBoundary	0	268.27	122.16	539.08	91.88	504.75	127.92	838.54	236.79	190.05	294.84	106.48	303.16	221.67	123.99	355.59	220.70	219.62	143.33	186.13	284.07	120.37	316.21	166.17	199.96	112.82	122.86	181.15	146.93	122.35
41	E3a_E4a	KnownJunction	0	13.33	4.65	26.73	0.00	55.56	16.04	55.21	19.71	19.25	14.10	10.66	12.44	4.55	12.85	71.36	11.47	10.13	18.49	40.46	11.50	10.03	17.06	4.97	19.20	8.87	23.09	18.39	13.57	11.75
42	E3_Db	NovelBoundary	0	2.83	0.00	1.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	E3b_E4a	KnownJunction	0	271.27	179.94	833.05	123.16	823.95	231.55	935.23	418.58	215.51	326.32	154.57	289.12	206.06	148.32	465.01	203.49	213.10	193.93	258.96	476.10	217.08	429.92	172.42	221.08	162.91	182.21	135.08	148.50	112.21
44	E3b_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	E3_Dc	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	2.00	0.00	1.20	0.00	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00
46	ER3b	ExonRegion	0	274.06	152.87	695.08	107.34	721.08	181.85	930.34	350.66	200.23	319.38	133.33	305.07	225.33	142.54	369.24	217.19	214.23	175.35	213.68	410.56	168.72	394.48	186.83	219.19	143.49	156.10	174.39	163.24	117.34
47	ER3c	ExonRegion	0	0.00	0.00	3.37	0.00	9.96	0.00	2.02	0.00	2.25	1.44	1.19	2.47	0.00	0.00	0.00	0.00	1.00	0.00	4.53	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.63	0.00
48	I3	Intron	0	2.59	0.97	2.02	0.00	0.00	0.00	1.82	0.00	0.00	1.31	0.72	1.67	0.00	0.27	0.00	2.79	1.35	1.74	0.00	0.60	1.29	0.00	0.00	0.65	1.29	0.00	0.00	0.98	0.00
49	I3_AR1	ActiveIntronRegion	0	2.62	0.98	2.04	0.00	0.00	0.00	1.85	0.00	0.00	1.32	0.73	1.69	0.00	0.28	0.00	2.82	1.37	1.76	0.00	0.61	1.30	0.00	0.00	0.66	1.31	0.00	0.00	1.00	0.00
50	E4_Aa	NovelBoundary	0	12.74	4.56	2.74	0.00	0.00	0.00	2.75	7.02	2.65	1.76	1.36	1.54	0.00	2.06	8.97	6.58	2.25	4.62	0.00	0.00	1.72	4.28	0.00	5.86	0.00	0.00	0.00	1.71	0.00
51	ER4a	ExonRegion	0	309.43	168.68	715.60	209.81	1218.73	244.54	961.82	378.47	241.67	403.91	210.47	358.67	271.80	185.43	370.22	217.90	285.78	171.97	203.62	400.16	177.58	485.92	178.18	274.88	207.56	165.69	147.03	147.93	123.48
52	E4_Da	KnownBoundary	0	269.39	103.25	439.92	261.20	1131.67	203.50	911.77	337.61	284.58	324.64	147.51	355.32	223.04	131.65	435.51	196.83	268.96	153.73	137.57	379.51	157.91	365.21	195.28	200.08	164.27	155.78	168.18	118.35	114.49
53	ER4b	ExonRegion	0	206.61	142.01	445.16	144.38	501.13	170.90	892.36	288.31	201.41	386.33	187.57	369.98	248.30	139.27	272.52	212.21	269.67	160.75	172.75	411.04	143.28	337.82	190.20	215.38	159.18	169.26	156.22	175.81	120.75
54	E4_Db	KnownBoundary	0	243.73	187.02	460.88	116.04	348.24	203.92	1131.08	366.33	240.27	422.26	252.22	424.12	240.52	163.40	416.78	309.67	280.29	204.72	307.29	437.31	165.13	422.92	180.80	196.67	176.09	205.00	220.61	233.19	136.48
55	ER4c	ExonRegion	0	108.82	141.81	291.02	60.09	237.69	142.29	565.53	208.03	212.31	315.49	181.48	283.71	178.92	112.45	238.58	184.34	219.12	104.89	155.90	242.82	124.89	218.62	122.10	173.56	121.23	96.47	132.85	127.82	101.09
56	ER5a	ExonRegion	0	0.00	0.00	0.17	0.00	0.00	0.14	0.00	0.00	0.11	0.00	0.00	0.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.00	0.00	0.00	0.44	0.00	0.00	0.00	0.00	0.00