Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC087590.3	Gene	0	29.23	36.30	18.74	6.95	7.04	18.96	14.88	4.91	23.04	31.04	21.85	26.70	7.46	19.93	37.20	63.27	82.70	11.78	18.02	27.90	7.03	4.09	2.49	22.41	16.12	11.12	7.33	16.17	3.99
2	420195	Transcript	0	17.38	19.71	9.56	3.20	7.66	11.94	11.43	3.27	25.09	16.01	7.89	12.51	2.89	16.08	33.46	45.29	64.63	8.73	16.22	10.88	4.12	4.19	2.40	23.67	15.28	6.89	3.21	9.18	3.65
3	413977	Transcript	0	10.85	4.85	2.47	9.06	6.34	10.32	2.29	0.00	8.86	3.99	0.00	1.54	0.00	12.92	18.34	33.35	38.45	10.66	8.09	3.72	5.17	1.94	0.00	11.42	10.15	2.10	0.00	8.31	7.82
4	436602	Transcript	0	6.76	18.22	0.36	0.00	0.00	8.04	5.63	1.24	9.17	11.43	10.51	7.42	2.13	6.63	17.75	26.47	11.49	3.59	5.13	14.06	2.88	0.00	0.00	2.93	3.43	2.15	2.57	2.20	3.37
5	IG7	Intergenic	0	14.58	9.95	6.39	4.06	5.30	15.47	5.14	1.91	7.84	19.64	6.63	10.74	3.24	13.41	12.33	38.97	38.35	9.81	12.22	6.94	6.06	1.11	2.90	5.79	6.68	4.45	3.29	8.55	2.02
6	IG7_AR1	ActiveIntergenicRegion	0	11.10	8.83	4.27	3.25	6.09	12.73	5.22	1.25	7.09	17.88	6.85	11.88	3.37	11.39	15.76	36.12	37.19	10.64	10.83	9.41	5.17	0.61	2.66	2.90	8.80	4.50	2.42	8.61	1.94
7	IG7_SR1	SilentIntergenicRegion	0	17.06	10.75	7.91	4.64	4.74	17.42	5.08	2.38	8.37	20.90	6.48	9.93	3.15	14.86	9.89	41.00	39.18	9.21	13.21	5.17	6.70	1.46	3.07	7.85	5.17	4.42	3.91	8.50	2.08
8	ER1a	ExonRegion	0	20.40	30.55	14.57	5.28	4.57	13.34	10.63	3.34	16.28	22.41	17.34	22.30	8.23	11.93	24.23	43.60	51.68	8.53	12.95	20.09	4.38	2.56	2.23	9.80	9.27	6.21	7.14	11.10	2.45
9	E1_Ab	KnownBoundary	0	35.45	48.28	21.73	0.00	6.48	14.43	11.27	6.47	40.50	14.74	24.74	39.70	8.92	18.19	50.23	63.34	60.26	0.00	8.09	77.82	7.98	0.00	0.00	27.16	17.01	10.30	0.00	20.26	5.28
10	E1_Ac	KnownBoundary	0	35.63	62.34	15.10	10.78	6.19	17.38	15.22	4.68	19.22	41.66	29.10	31.23	14.20	22.42	15.15	80.09	67.48	0.00	16.18	59.87	3.33	4.33	0.00	12.32	10.34	14.08	7.60	18.42	5.58
11	ER1b	ExonRegion	0	67.52	119.08	52.18	29.25	9.96	41.58	36.79	15.65	66.01	64.97	85.69	81.63	28.25	44.22	81.21	150.58	153.51	26.61	52.05	141.24	18.54	6.31	0.90	52.17	38.23	27.11	12.82	36.68	14.76
12	ER1c	ExonRegion	0	74.99	138.88	36.37	15.79	5.21	36.77	40.25	13.17	70.69	91.62	82.28	72.47	28.44	31.99	95.66	114.55	138.34	18.38	40.55	119.85	16.68	6.51	3.03	44.05	39.48	19.35	19.86	36.54	11.03
13	E1_Da	NovelBoundary	1	64.88	121.38	44.85	8.63	7.22	51.11	10.41	12.34	96.38	104.90	146.75	57.89	23.37	34.48	81.12	98.07	169.40	23.89	40.46	134.80	14.96	17.45	7.09	28.11	34.78	11.29	19.08	33.83	3.43
14	E1a_E2a	KnownJunction	0	3.01	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	3.52	8.37	6.88	2.21	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
15	E1a_E3a	KnownJunction	0	10.85	4.85	2.47	9.06	6.34	10.32	2.29	0.00	8.86	3.99	0.00	1.54	0.00	12.92	18.34	33.35	38.45	10.66	8.09	3.72	5.17	1.94	0.00	11.42	10.15	2.10	0.00	8.31	7.82
16	E1a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.12	0.00	3.52	7.23	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.57	0.00	0.00	0.00	0.00
17	Ix	Intron	0	41.66	128.98	23.74	3.95	10.77	39.23	20.56	7.61	40.96	63.29	84.48	52.11	14.29	15.47	66.75	66.88	82.30	11.20	27.74	123.97	11.60	4.72	3.49	25.80	25.02	9.96	13.88	24.04	3.68
18	Ix_AR1	ActiveIntronRegion	0	41.87	129.61	23.87	3.97	10.83	39.44	20.67	7.65	41.18	63.63	84.94	52.39	14.36	15.55	67.12	67.23	82.74	11.25	27.89	124.62	11.66	4.75	3.51	25.92	25.15	10.02	13.96	24.16	3.70
19	E2_Aa	NovelBoundary	0	49.13	197.88	18.59	0.00	0.00	36.53	29.92	4.13	59.66	71.46	36.54	57.11	7.26	13.03	33.49	46.43	100.46	4.62	16.18	74.43	18.61	0.00	6.80	26.50	26.41	6.05	11.68	10.42	4.82
20	ER2a	ExonRegion	0	14.26	54.66	1.09	0.00	0.00	20.97	13.98	3.71	14.47	30.80	31.53	22.25	6.39	10.86	29.12	43.90	18.08	10.77	15.39	38.38	8.65	0.00	0.00	8.78	8.35	6.45	7.72	6.61	6.35
21	E2_Da	NovelBoundary	0	45.95	152.70	29.75	31.06	0.00	42.97	32.21	4.03	54.33	98.07	90.82	59.28	23.37	30.55	78.53	51.25	125.33	13.87	48.55	147.95	7.10	6.86	2.51	25.00	21.29	12.53	7.95	18.29	3.17
22	E2a_E3a	KnownJunction	0	3.01	0.00	0.00	0.00	0.00	3.15	0.00	0.00	13.03	3.48	0.00	0.00	0.00	5.49	15.75	28.61	14.18	0.00	0.00	3.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.76
23	Ix	Intron	0	41.75	90.97	18.95	10.16	6.92	37.98	17.13	3.91	31.77	67.05	71.63	47.20	14.23	12.67	27.30	41.83	61.85	8.98	15.84	83.68	10.61	1.92	2.56	16.00	17.72	7.24	7.78	19.63	2.84
24	Ix_SR1	SilentIntronRegion	0	45.19	98.45	20.51	11.00	7.49	41.12	18.55	4.24	34.38	72.59	77.53	51.08	15.39	13.71	29.56	45.27	66.96	9.71	17.15	90.58	11.46	2.07	2.77	17.32	19.17	7.83	8.43	21.25	3.08
25	E3_Aa	NovelBoundary	0	50.61	84.73	26.04	21.57	0.00	40.63	31.98	6.62	42.45	92.23	93.35	69.22	20.13	18.08	98.46	33.05	133.05	32.36	48.33	148.78	13.12	9.97	15.56	19.32	27.58	11.89	19.03	13.93	3.43
26	ER3a	ExonRegion	0	52.14	107.22	22.06	13.23	4.76	68.12	21.81	11.58	42.34	82.72	83.36	50.00	9.43	43.23	61.67	137.63	153.13	27.87	49.73	134.56	18.70	3.99	2.11	38.02	35.46	18.65	14.65	34.19	6.67
27	E3_Ab	KnownBoundary	0	61.93	173.54	37.62	25.24	5.60	89.32	26.03	21.90	65.81	100.10	104.90	49.88	12.83	42.85	44.25	170.90	203.03	36.86	48.55	194.18	31.05	8.36	0.00	59.04	46.37	16.14	7.45	28.22	0.00
28	ER3b	ExonRegion	0	50.21	76.57	39.68	15.70	5.61	49.40	22.96	9.53	35.46	67.05	63.68	50.64	10.80	33.68	61.45	99.58	163.78	22.48	32.52	96.47	18.31	9.65	3.17	33.85	31.01	17.30	11.88	32.33	5.86
29	E3_Da	KnownBoundary	0	193.65	690.58	678.13	165.87	81.35	339.17	175.53	108.44	254.83	1074.46	1054.41	2132.85	1097.07	110.65	243.77	333.00	404.56	190.85	113.29	357.76	76.13	270.36	217.19	170.18	187.04	174.62	534.79	261.50	123.54
30	ER3c	ExonRegion	0	48.11	51.79	22.66	0.21	11.27	24.89	18.55	6.27	44.26	46.14	20.68	32.59	11.98	28.59	77.10	121.65	155.80	23.87	40.12	42.27	11.29	6.46	2.16	32.37	34.54	24.46	1.49	27.81	6.82
31	E3_Db	KnownBoundary	0	22.83	9.50	1.32	0.00	0.00	15.46	8.07	7.07	20.34	14.90	9.96	8.86	3.28	19.41	28.10	18.36	63.77	0.00	0.00	11.50	4.09	4.18	2.46	29.67	19.74	5.92	0.00	8.45	4.69
32	ER3d	ExonRegion	0	39.69	25.04	23.42	8.85	12.87	20.90	19.21	6.34	27.63	34.04	14.47	27.08	3.38	32.24	51.38	89.56	125.73	14.79	20.68	15.63	8.67	5.75	3.09	43.65	23.81	19.14	6.06	21.64	5.64
33	E3_Dc	NovelBoundary	0	27.31	8.34	15.25	10.78	0.00	2.99	5.61	5.03	4.78	25.96	10.79	16.23	1.53	9.24	0.00	20.81	24.08	9.25	0.00	3.97	3.57	7.44	2.51	5.86	10.87	13.78	2.44	6.87	1.95
34	E3c_E4a	KnownJunction	0	16.40	16.68	3.04	0.00	12.82	17.57	13.16	3.98	55.85	9.15	0.00	3.34	1.27	19.36	62.98	60.28	95.12	13.87	32.37	9.68	3.37	6.56	4.58	40.67	25.35	4.03	0.00	8.00	5.51
35	Ix	Intron	0	14.79	17.36	11.93	0.95	3.89	9.76	5.62	1.53	7.33	21.85	11.49	19.86	1.31	5.42	9.39	14.66	20.01	5.69	8.27	6.60	4.07	1.62	1.14	3.35	4.89	3.81	2.98	4.92	0.91
36	Ix_SR1	SilentIntronRegion	0	16.46	20.95	16.20	9.22	2.09	16.66	5.86	0.60	9.79	37.33	15.57	31.24	0.29	7.20	11.95	10.08	34.64	5.64	19.62	6.05	8.11	2.32	0.00	4.86	9.98	13.18	3.36	10.29	0.21
37	Ix_AR1	ActiveIntronRegion	0	14.63	16.53	15.05	0.51	3.16	10.57	8.02	1.57	5.96	24.49	13.61	21.76	0.94	5.55	8.96	15.99	23.30	6.81	9.78	6.64	4.45	1.80	0.78	3.58	4.56	4.41	4.48	5.42	0.92
38	Ix_SR2	SilentIntronRegion	0	17.49	17.96	6.06	0.00	2.98	11.96	3.60	1.19	6.22	17.62	9.34	19.44	3.28	7.46	10.73	15.26	19.70	7.01	3.76	5.25	7.15	0.93	0.00	0.54	3.97	2.41	3.68	5.42	0.00
39	Ix_AR2	ActiveIntronRegion	0	15.03	18.31	9.38	0.00	5.70	6.84	3.04	1.79	9.38	17.41	8.95	16.83	1.40	4.91	9.42	13.32	14.11	4.36	5.60	6.97	2.46	1.38	2.13	3.29	4.73	1.21	1.14	3.01	1.37
40	Ix_SR3	SilentIntronRegion	0	15.54	29.56	3.37	0.00	4.98	10.93	5.34	0.46	6.01	16.31	6.37	11.13	4.03	2.81	6.72	28.60	10.42	6.96	3.85	6.46	2.64	3.61	1.81	4.52	2.50	5.74	0.00	7.50	0.00
41	Ix_AR3	ActiveIntronRegion	0	5.70	5.83	1.33	0.00	1.32	7.91	2.78	1.60	2.84	7.08	5.88	3.76	2.79	1.71	7.93	14.52	6.50	1.03	0.00	6.63	0.24	0.61	0.85	2.96	2.24	2.61	0.00	3.29	0.00
42	Ix	Intron	0	8.45	16.12	4.98	3.61	2.46	6.51	4.57	1.78	6.65	18.71	9.63	7.75	1.95	3.57	7.72	12.47	13.58	2.22	6.03	4.08	4.55	1.59	0.76	7.85	3.53	3.03	2.07	4.24	1.65
43	Ix_SR1	SilentIntronRegion	0	5.89	8.68	2.78	2.33	0.79	5.43	3.29	0.61	3.88	14.02	5.15	3.51	1.77	1.70	4.16	5.78	5.52	2.05	3.23	2.31	2.40	1.06	0.00	4.59	1.76	2.25	2.97	2.65	0.93
44	Ix_AR1	ActiveIntronRegion	0	9.35	18.73	5.75	4.06	3.04	6.90	5.01	2.19	7.62	20.37	11.20	9.24	2.02	4.22	8.97	14.82	16.41	2.28	7.01	4.70	5.30	1.77	1.02	8.99	4.16	3.31	1.76	4.80	1.91
45	E4_Aa	NovelBoundary	0	2.36	4.85	3.64	9.49	0.00	1.76	10.47	0.00	5.60	5.31	8.79	6.90	0.00	2.13	25.31	13.77	20.08	0.00	16.18	6.95	2.09	0.00	0.00	0.00	1.93	0.00	0.00	0.00	1.82
46	ER4a	ExonRegion	0	10.43	26.26	6.75	1.85	8.03	7.89	14.13	2.68	25.69	14.48	7.65	9.84	1.59	13.75	28.68	29.47	43.40	6.46	15.09	8.99	4.19	6.08	2.13	24.24	12.39	5.06	2.83	5.19	4.63