Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	NR1D2	Gene	0	23.77	55.76	24.25	57.71	73.20	87.57	64.70	12.73	25.03	126.99	94.81	35.64	21.31	38.02	18.12	43.73	39.99	32.59	32.73	77.52	79.15	9.63	63.61	76.42	41.69	17.58	65.15	15.04	30.09
2	396676	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3	312521	Transcript	0	2.14	8.76	0.00	7.31	0.00	0.92	7.39	0.00	1.12	4.33	1.59	0.82	0.00	0.00	7.47	1.69	2.00	6.37	0.00	0.00	4.75	0.00	1.81	11.47	0.95	0.00	0.00	1.63	0.89
4	383773	Transcript	0	1.15	0.00	1.06	0.00	17.58	0.69	3.10	0.00	0.00	7.83	5.46	0.10	0.00	1.59	0.00	0.34	4.65	0.05	1.91	4.01	0.44	1.70	1.18	3.35	0.00	0.00	4.23	1.69	0.98
5	492552	Transcript	0	0.06	0.01	0.34	1.37	0.04	0.00	0.39	0.01	0.00	0.28	0.01	0.00	0.00	0.17	0.00	0.96	0.00	0.00	0.00	0.00	0.01	0.00	0.01	0.00	0.01	0.00	0.00	0.65	0.00
6	468700	Transcript	0	0.50	0.00	0.00	0.00	0.00	1.46	0.47	0.30	0.71	1.47	0.56	0.79	0.00	0.97	0.00	0.00	1.01	0.74	0.75	0.03	0.08	0.03	0.42	0.51	1.19	0.00	0.03	0.01	1.64
7	472780	Transcript	0	0.26	1.87	1.06	0.27	2.26	1.69	3.73	0.12	3.83	2.77	2.25	0.83	0.11	0.75	1.20	0.83	3.76	2.83	1.65	2.92	2.68	0.61	0.69	2.00	0.23	0.19	1.34	0.12	0.59
8	ER1a	ExonRegion	0	1.74	0.00	0.50	5.04	11.25	2.20	1.77	0.71	0.00	0.63	0.00	0.00	0.00	0.00	0.00	4.06	0.07	0.85	1.40	2.42	2.51	0.00	0.00	0.00	0.33	4.43	0.00	2.39	0.27
9	E1_Ab	KnownBoundary	0	0.00	0.00	3.79	39.69	35.37	14.23	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.37	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	15.15	0.00	2.11	1.62
10	ER1b	ExonRegion	0	7.64	3.03	2.01	6.58	4.21	8.54	6.00	2.71	0.09	8.00	4.33	1.75	0.81	3.23	2.51	7.52	1.81	5.23	2.91	7.98	2.66	2.02	9.16	3.18	1.26	4.55	0.55	1.06	0.46
11	E1a_E3a	KnownJunction	0	44.77	18.13	8.75	10.78	0.00	19.76	20.94	11.55	1.34	46.62	23.54	12.62	1.40	18.57	8.37	45.21	11.95	9.25	16.18	35.89	13.84	4.42	38.02	5.86	11.10	9.61	0.00	4.49	5.15
12	E1a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	0.13	0.02	0.67	2.75	0.07	0.00	0.77	0.01	0.00	0.55	0.02	0.00	0.00	0.35	0.00	1.92	0.00	0.00	0.00	0.00	0.02	0.00	0.03	0.00	0.01	0.00	0.00	1.30	0.00
15	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	2.98	1.26	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	Ix_SR1	SilentIntronRegion	0	3.26	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	I2_SR1	SilentIntronRegion	0	0.00	0.36	0.09	2.00	0.00	1.15	1.35	0.10	1.00	2.02	0.00	0.83	1.08	0.38	1.08	0.28	1.58	0.22	0.18	0.31	0.88	0.00	0.20	0.48	0.32	0.35	0.10	0.36	0.82
19	I2_AR3	ActiveIntronRegion	0	0.43	0.00	0.00	0.00	4.98	0.00	0.00	0.00	0.00	0.00	0.00	0.16	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.72	1.05	0.00	0.00	1.63	2.68
20	I2_AR4	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.13	0.00	0.78	0.00	0.00	0.00	0.55	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.25	2.03
21	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	3.15	0.00	0.00	3.29	1.72	0.00	0.00	0.00	0.00	0.00	0.00	4.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.37	0.00	0.00
22	ER3a	ExonRegion	0	27.25	25.70	15.81	12.19	20.42	31.46	29.03	8.12	3.86	56.85	42.49	18.32	3.32	27.62	10.33	30.09	19.79	18.10	6.44	53.96	22.47	11.34	43.12	26.15	32.14	11.47	9.71	11.27	6.37
23	E3_Ab	KnownBoundary	0	24.07	48.67	12.01	10.78	7.07	38.71	59.05	0.00	3.05	69.55	58.59	30.30	8.92	29.56	16.74	30.45	20.57	23.89	0.00	40.36	37.58	9.63	47.08	48.57	24.44	4.16	12.03	5.93	9.14
24	ER3b	ExonRegion	0	46.88	46.58	27.20	51.52	34.39	77.77	58.24	13.62	5.91	141.03	133.25	37.02	14.58	61.59	3.80	41.08	34.18	34.97	12.35	96.96	69.18	18.59	99.34	63.33	63.70	18.33	42.03	21.36	15.50
25	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.26	0.00	0.00	1.69	0.00	0.00	0.00	0.00	1.17	0.00	8.09	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E3a_E4a	KnownJunction	0	58.04	55.65	45.15	35.59	26.23	84.87	74.72	12.04	8.77	167.33	149.28	43.01	9.52	71.92	16.54	42.23	38.36	43.15	0.00	111.23	58.44	15.07	128.34	60.23	60.16	9.57	105.31	14.60	31.89
27	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	1.49
28	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	3.60	1.61	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER4a	ExonRegion	0	46.89	48.42	59.72	68.44	60.73	96.13	66.70	24.62	4.13	153.98	147.31	37.54	21.76	62.87	3.40	37.36	35.94	37.26	15.36	94.49	89.48	17.44	113.51	58.61	63.37	23.84	63.36	14.45	29.53
30	E4a_E5a	KnownJunction	0	27.37	64.86	68.54	98.14	41.41	96.00	79.53	20.16	5.69	146.12	119.74	45.81	24.62	64.50	8.37	28.38	37.50	32.36	16.18	66.24	99.51	24.79	93.97	48.03	73.76	30.90	82.45	19.64	27.34
31	ER5a	ExonRegion	0	46.00	66.74	62.93	75.09	79.02	99.17	87.15	24.72	10.47	205.13	153.97	58.38	29.15	68.95	7.45	54.28	51.93	35.35	27.19	84.71	99.37	18.00	126.77	59.09	67.21	41.43	97.18	30.62	38.40
32	E5_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.24	2.44	1.96	0.00	1.33	0.00	3.17	0.00	0.00	6.46	4.62	0.00	0.00	1.68	0.00	0.00	0.00	1.93	0.00	0.00	0.00	1.42
33	E5a_E6a	KnownJunction	0	31.62	85.51	88.57	98.14	62.93	74.32	102.99	30.56	8.77	140.41	77.03	43.04	36.30	61.46	9.97	55.54	47.61	52.27	24.28	58.88	85.15	24.55	133.22	45.34	43.98	33.64	91.34	22.65	25.98
34	ER5b	ExonRegion	0	1.00	0.00	0.00	0.00	0.00	1.01	0.94	0.59	1.41	2.94	1.11	1.58	0.00	1.93	0.00	0.00	2.01	1.48	1.49	0.05	0.16	0.07	0.85	1.03	2.37	0.00	0.07	0.01	1.49
35	E5_Db	NovelBoundary	0	0.00	0.00	1.40	0.00	0.00	1.96	0.00	0.00	3.11	1.80	0.00	2.59	0.00	0.82	0.00	0.00	0.99	0.00	0.00	0.00	2.05	2.14	0.00	2.63	0.00	0.00	0.00	3.77	0.00
36	E5b_E6a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78
37	E6_Aa	NovelBoundary	0	7.49	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	4.59	0.00	0.00	0.00	0.00	0.00	0.00	2.23	0.00	0.00	0.00	1.60	0.00	1.87	2.99	1.82	0.00	0.00	0.00	1.25
38	ER6a	ExonRegion	0	42.03	50.11	71.20	71.19	87.71	70.95	73.62	33.94	12.53	170.89	109.05	51.49	26.16	58.89	9.68	49.47	56.38	45.32	28.51	78.02	68.15	16.11	111.26	57.17	56.48	33.54	64.10	25.36	40.57
39	E6_Da	KnownBoundary	0	39.11	32.09	66.50	88.43	138.53	59.66	49.66	30.36	4.81	147.00	132.87	53.64	14.27	66.58	35.48	57.30	39.86	80.14	40.46	64.26	48.85	21.29	92.05	70.52	46.64	30.47	91.54	30.46	32.06
40	ER6b	ExonRegion	0	34.28	56.01	52.50	76.07	78.80	76.63	73.81	19.68	11.85	167.48	130.02	56.19	17.86	61.86	16.80	57.09	50.58	37.48	37.18	80.21	84.02	15.98	98.79	71.19	59.92	37.93	74.34	24.57	22.70
41	E6_Db	NovelBoundary	0	0.00	4.85	1.12	0.00	6.19	3.64	0.00	0.00	0.00	1.88	3.13	0.00	0.00	2.02	0.00	0.00	0.95	0.00	0.00	4.13	3.37	0.00	0.00	5.14	1.59	3.26	0.00	0.00	0.00
42	E6b_E7a	KnownJunction	0	0.00	0.00	1.45	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	1.36	0.00	0.00	0.00	0.00	1.06	0.00	0.00	0.00	1.85	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00
43	E6b_E8b	KnownJunction	0	33.15	82.60	58.60	69.02	59.83	90.78	97.78	22.59	7.58	131.82	69.85	56.44	20.95	61.31	34.48	53.63	32.75	19.14	8.09	60.04	77.69	15.95	93.67	70.04	49.48	42.49	62.82	33.34	28.39
44	E6b_E9a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	I6	Intron	0	0.90	1.33	0.14	1.82	7.01	2.79	1.53	0.62	1.94	1.83	4.12	0.47	0.33	0.91	1.56	0.63	2.02	3.14	1.35	4.19	3.49	0.30	0.15	1.46	0.36	0.40	0.31	0.14	0.34
46	I6_SR1	SilentIntronRegion	0	0.91	1.33	0.14	1.83	7.05	2.80	1.54	0.62	1.95	1.84	4.14	0.47	0.33	0.92	1.57	0.63	2.03	3.16	1.36	4.21	3.51	0.31	0.15	1.46	0.36	0.40	0.31	0.14	0.34
47	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	7.37	5.56	2.80	0.00	3.05	3.95	6.36	0.00	0.00	2.19	0.00	3.75	4.70	4.62	8.09	7.19	16.53	0.00	2.51	2.99	0.00	0.00	20.18	0.00	1.68
48	ER7a	ExonRegion	0	3.31	0.00	1.25	0.00	11.93	9.03	3.53	0.00	0.00	3.94	7.64	1.66	0.00	4.36	0.00	4.03	4.69	0.00	6.82	7.50	5.53	0.00	3.64	2.31	1.80	0.23	0.00	1.37	1.47
49	E7_Da	NovelBoundary	0	5.31	0.00	1.47	0.00	12.67	3.64	5.49	0.00	1.37	11.34	8.98	0.00	0.00	2.02	0.00	0.00	7.29	0.00	16.18	7.11	1.89	0.00	4.68	5.50	0.00	0.00	0.00	2.02	3.30
50	E7_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.28	3.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	4.13	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
51	E7b_E8b	KnownJunction	0	0.00	0.00	1.00	0.00	21.37	0.00	2.86	0.00	0.00	5.43	4.65	0.00	0.00	1.13	0.00	0.00	3.67	0.00	0.00	4.13	0.00	2.29	0.00	2.39	0.00	0.00	5.07	1.75	0.00
52	ER7b	ExonRegion	0	2.31	0.00	1.12	0.00	13.80	1.37	3.33	0.00	0.00	10.22	6.27	0.19	0.00	2.06	0.00	0.68	5.63	0.10	3.83	3.89	0.88	1.11	2.36	4.30	0.00	0.00	3.38	1.63	1.96
53	I7	Intron	0	0.33	0.75	0.26	0.00	0.38	1.50	1.10	0.14	0.92	1.92	1.95	0.67	0.00	0.57	0.00	1.30	1.63	0.60	0.25	1.72	0.67	0.00	0.00	1.68	0.22	0.49	0.86	0.00	0.99
54	I7_SR1	SilentIntronRegion	0	0.34	0.76	0.26	0.00	0.38	1.51	1.11	0.14	0.92	1.92	1.96	0.68	0.00	0.57	0.00	1.31	1.64	0.60	0.25	1.73	0.67	0.00	0.00	1.69	0.22	0.49	0.86	0.00	1.00
55	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.66	2.04	0.00	1.54	0.00	0.00	0.00	0.00	1.40	4.62	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
56	ER8a	ExonRegion	0	0.26	1.87	1.06	0.27	2.26	1.69	3.73	0.12	3.83	2.77	2.25	0.83	0.11	0.75	1.20	0.83	3.76	2.83	1.65	2.92	2.68	0.61	0.69	2.00	0.23	0.19	1.34	0.12	0.59
57	E8_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	7.22	5.64	2.86	0.00	2.41	0.00	5.73	0.00	0.00	0.00	0.00	0.00	2.52	0.00	0.00	0.00	1.60	2.09	2.51	2.75	0.00	0.00	5.96	2.02	0.00
58	ER8b	ExonRegion	0	51.83	71.03	63.52	71.66	89.24	96.98	87.61	26.19	15.98	189.70	135.63	47.49	30.37	63.00	13.29	63.75	50.30	38.68	41.47	94.68	83.88	16.98	96.86	76.93	70.27	27.12	67.97	30.75	28.42
59	E8a_E9a	KnownJunction	0	33.86	81.15	46.37	76.36	46.13	112.88	155.97	49.82	4.39	181.59	86.30	59.52	30.03	64.76	17.54	38.25	63.66	50.86	32.37	126.86	82.35	15.07	103.77	69.69	72.70	22.10	55.46	33.65	40.01
60	E8a_E10a	NovelJunction	0	0.00	0.00	0.00	9.06	0.00	0.00	0.00	0.00	0.00	3.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
61	E9_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
62	ER9a	ExonRegion	0	40.29	51.07	39.22	93.06	89.05	113.65	94.13	22.35	11.93	210.56	151.62	40.71	24.58	58.86	11.70	53.03	54.11	45.24	41.54	121.73	96.77	17.27	119.07	86.46	71.57	25.92	85.19	29.43	34.52
63	E9_Da	NovelBoundary	0	13.98	11.15	21.10	95.98	34.48	43.85	47.43	7.46	1.10	73.94	79.50	15.81	8.82	20.76	16.34	29.38	35.56	13.87	16.18	47.63	67.67	3.74	52.99	21.47	22.58	8.63	23.90	13.93	10.80
64	E9_Db	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	2.04	0.00	1.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
65	E9b_E10a	KnownJunction	0	38.75	52.35	38.49	100.94	88.72	114.83	68.09	16.52	7.31	168.37	137.07	48.40	18.02	50.10	7.97	69.15	55.80	18.49	72.83	100.64	108.18	22.61	87.12	51.50	50.43	21.89	34.84	14.65	31.96
66	ER9b	ExonRegion	0	39.87	44.67	47.35	120.66	77.71	111.21	80.03	15.10	4.72	176.28	159.24	43.29	18.06	51.25	11.20	59.47	55.60	37.39	49.78	96.97	106.12	24.52	107.59	55.50	53.17	24.67	56.04	22.01	24.29
67	I9_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	1.09	0.00	0.00	0.84	1.56	0.00	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	3.26	1.01
68	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.19	2.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	1.85	0.00	0.00	2.57	0.00	0.00	0.00	0.00	0.00
69	ER10a	ExonRegion	0	40.41	71.40	42.64	98.12	124.14	161.32	99.31	22.73	20.02	224.31	185.22	48.64	24.23	58.02	16.80	69.11	60.56	57.42	39.38	119.53	137.41	19.13	117.13	99.96	77.13	33.12	113.36	25.99	39.53
70	E10_Da	KnownBoundary	0	31.32	92.98	12.36	94.90	157.98	175.84	110.02	23.89	32.34	213.03	173.33	49.79	26.18	72.54	9.17	52.40	70.63	51.24	32.37	128.68	117.28	26.20	84.71	94.69	83.46	22.10	98.85	22.20	39.35
71	ER10b	ExonRegion	0	17.38	77.44	11.30	65.96	93.43	113.88	77.98	8.66	45.48	133.48	96.84	40.35	28.85	35.07	30.69	51.78	46.94	37.04	46.58	93.87	102.61	7.02	52.31	111.45	39.47	13.45	83.68	12.33	41.36
72	ER10c	ExonRegion	0	2.14	8.76	0.00	7.31	0.00	0.92	7.39	0.00	1.12	4.33	1.59	0.82	0.00	0.00	7.47	1.69	2.00	6.37	0.00	0.00	4.75	0.00	1.81	11.47	0.95	0.00	0.00	1.63	0.89
73	IG51	Intergenic	0	1.76	18.97	0.00	5.90	8.03	26.03	8.29	3.03	5.55	27.32	7.83	0.00	1.07	0.00	3.79	22.45	0.00	5.02	13.14	12.97	17.60	0.00	4.46	31.85	3.53	0.00	19.59	0.00	0.00
74	IG51_AR1	ActiveIntergenicRegion	0	1.82	19.44	0.00	6.09	8.30	26.69	8.57	3.13	5.71	28.08	8.01	0.00	1.10	0.00	3.92	23.20	0.00	5.19	13.58	13.40	18.19	0.00	4.61	32.84	3.62	0.00	20.15	0.00	0.00