Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	SETMAR	Gene	0	24.36	15.90	28.57	50.74	20.81	23.49	53.57	37.31	13.90	29.97	19.99	22.15	11.05	7.61	25.48	13.43	10.46	13.23	19.87	12.03	26.82	23.69	17.50	21.90	19.66	10.54	21.03	11.44	15.26
2	358065	Transcript	0	1.03	7.24	2.90	2.07	4.00	3.11	3.23	1.97	2.29	5.72	2.60	2.42	0.40	1.12	4.54	1.41	1.77	3.69	5.98	1.05	4.16	1.74	0.86	2.77	0.36	1.85	4.08	2.50	0.67
3	413809	Transcript	0	5.49	0.00	4.16	0.00	7.37	0.00	0.00	12.29	3.32	0.00	0.00	1.23	0.00	0.00	0.00	0.00	1.13	4.62	0.00	2.98	7.30	2.29	0.00	0.00	0.00	0.00	0.00	2.29	1.75
4	425046	Transcript	0	16.52	0.00	0.00	0.00	6.78	4.57	2.69	11.65	2.77	3.28	0.00	1.81	3.53	2.19	24.32	6.58	1.87	0.00	0.00	15.55	1.89	15.36	7.49	0.00	1.55	0.00	2.14	1.80	0.00
5	430981	Transcript	0	2.72	2.28	5.83	11.98	2.72	3.11	5.78	2.73	5.65	5.21	3.24	8.44	2.11	2.15	1.68	5.20	5.59	4.43	7.22	1.32	6.77	2.47	0.49	4.57	2.96	2.05	2.55	2.01	7.40
6	307483	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	425863	Transcript	1	5.96	8.34	6.90	10.35	0.00	12.81	25.80	8.21	1.25	3.60	0.00	9.07	2.99	0.95	8.37	6.81	1.40	13.87	0.00	7.19	3.33	4.72	6.45	8.37	9.32	0.00	11.18	0.00	9.77
8	358950	Transcript	0	1.07	0.00	1.03	3.66	2.49	0.34	3.59	2.24	0.00	1.36	1.19	0.31	0.00	0.00	8.97	0.00	0.00	0.00	0.00	4.84	0.59	0.00	0.00	2.06	0.87	0.00	0.00	0.82	0.00
9	490691	Transcript	0	2.65	0.00	1.30	0.00	0.00	3.72	12.30	2.04	0.00	5.15	6.07	2.92	0.00	1.37	17.94	0.00	0.00	0.00	0.00	0.00	3.85	1.90	0.00	0.00	5.00	0.00	5.07	0.00	0.00
10	462115	Transcript	0	1.01	2.28	2.26	0.82	1.12	1.35	1.19	0.42	0.85	2.59	0.00	2.76	0.30	0.78	0.00	1.54	0.99	1.77	1.10	0.00	4.33	1.18	0.21	0.51	1.02	0.18	0.84	0.60	1.08
11	406657	Transcript	0	5.31	0.00	9.29	31.49	0.00	1.46	19.40	11.30	0.00	3.99	2.97	4.46	2.55	0.00	26.71	10.33	5.85	13.87	8.09	6.70	3.25	4.28	15.17	13.52	13.37	0.00	3.78	0.00	22.48
12	ER1a	ExonRegion	0	0.37	2.15	2.17	0.50	0.00	0.00	0.97	0.13	0.81	0.40	0.74	0.00	0.81	0.09	3.67	0.00	0.00	1.88	0.00	0.00	0.00	0.93	0.81	1.63	0.00	1.41	0.13	2.53	0.69
13	E1_Ac	KnownBoundary	0	0.00	4.85	0.00	9.27	0.00	0.00	5.61	0.00	1.55	3.75	1.61	0.00	1.62	0.00	9.77	0.00	0.00	4.62	0.00	0.00	0.00	2.43	0.00	5.98	0.00	2.19	2.09	8.76	2.97
14	E1_Ad	KnownBoundary	0	5.84	0.00	4.56	21.57	0.00	0.00	0.00	7.56	0.00	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	4.62	0.00	2.98	0.00	0.00	4.63	3.05	0.00	2.02	4.87	2.29	0.00
15	ER1b	ExonRegion	0	4.29	3.28	5.61	10.24	0.00	0.00	2.02	3.68	1.12	1.44	1.19	1.24	1.30	0.91	5.60	0.00	0.00	5.46	0.00	1.12	0.00	1.80	3.62	4.30	0.00	3.14	1.83	4.24	1.34
16	E1_Ae	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER1c	ExonRegion	0	18.76	3.28	13.46	35.04	1.04	7.05	6.47	15.50	6.46	2.89	1.19	5.31	1.73	1.44	18.20	6.54	0.75	11.60	3.58	5.39	0.83	9.16	7.23	5.56	2.08	6.48	1.83	12.02	5.59
18	E1_Af	KnownBoundary	0	25.36	3.88	19.16	18.12	14.00	17.84	11.33	18.16	7.49	6.75	0.00	8.58	3.95	1.20	0.00	3.82	2.21	0.00	0.00	7.19	7.22	11.81	0.00	0.00	1.93	10.13	0.00	12.22	6.40
19	ER1d	ExonRegion	0	35.37	7.39	25.95	82.27	8.72	20.62	16.38	30.38	12.08	10.65	0.60	11.13	3.90	1.93	23.80	12.65	2.88	17.06	16.41	11.24	6.60	16.68	10.85	5.11	2.86	15.91	2.75	18.75	9.06
20	ER1e	ExonRegion	0	36.44	6.57	31.42	95.06	14.94	21.99	20.16	31.30	13.48	15.88	0.00	11.13	3.90	2.72	22.40	12.65	3.01	16.38	18.10	11.24	8.56	16.22	12.66	4.30	2.86	20.43	3.66	17.93	9.40
21	ER1f	ExonRegion	0	42.30	14.75	84.03	149.08	56.56	43.92	116.90	69.36	21.86	45.07	27.25	37.15	16.88	8.68	47.48	32.77	20.51	23.79	23.24	15.50	44.70	38.74	39.04	16.96	23.69	20.30	29.12	29.86	26.99
22	E1a_E3a	KnownJunction	0	13.74	0.00	10.66	0.00	0.00	7.33	17.28	9.46	1.22	1.60	1.61	3.19	0.00	0.89	0.00	0.00	0.00	4.62	0.00	6.53	1.76	13.61	9.75	4.73	6.71	0.00	2.48	2.29	0.00
23	E1a_E3b	KnownJunction	0	16.52	0.00	0.00	0.00	6.78	4.57	2.69	11.65	2.77	3.28	0.00	1.81	3.53	2.19	24.32	6.58	1.87	0.00	0.00	15.55	1.89	15.36	7.49	0.00	1.55	0.00	2.14	1.80	0.00
24	E1a_E3c	NovelJunction	0	2.60	0.00	1.54	0.00	0.00	0.00	2.29	0.00	1.43	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.09	0.00	0.00	1.85	0.00	2.93	5.15	0.00	0.00	0.00	0.00
25	E1a_E4a	NovelJunction	0	11.97	4.85	0.95	0.00	0.00	1.73	7.72	35.23	1.25	11.02	1.49	0.00	1.59	2.24	0.00	0.00	2.57	0.00	0.00	14.39	1.89	0.00	2.51	8.25	0.00	4.03	2.48	0.00	7.82
26	E2_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.95
27	E2_Ab	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.10	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	E2_Ac	NovelBoundary	0	2.95	0.00	5.36	41.20	70.15	3.76	5.15	0.00	1.55	3.71	4.75	2.68	0.00	2.19	9.97	0.00	1.15	0.00	0.00	3.89	5.58	7.44	0.00	2.81	3.86	0.00	0.00	4.54	0.00
29	ER2a	ExonRegion	0	2.14	0.00	2.06	7.31	4.98	0.69	1.34	0.00	0.00	1.20	2.38	0.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.41	1.19	0.00	0.00	1.08	0.00	0.00	0.00	1.63	0.00
30	ER2b	ExonRegion	0	2.14	0.00	3.93	13.06	24.20	1.96	4.75	0.00	0.00	3.51	2.89	3.71	0.00	0.00	0.00	0.00	1.00	0.00	0.00	3.01	4.48	0.13	0.13	2.15	1.33	0.00	1.31	1.63	0.38
31	ER2c	ExonRegion	0	6.00	4.38	12.97	37.05	44.61	7.24	25.49	2.66	1.60	9.85	5.34	6.54	0.72	0.83	15.93	4.78	2.96	7.28	5.83	14.49	11.09	4.93	8.44	3.20	13.28	4.44	12.37	1.88	8.65
32	E2_Ad	KnownBoundary	0	8.61	9.40	20.18	60.61	43.03	9.25	45.37	4.73	2.92	13.74	8.83	11.78	1.75	0.93	44.25	11.47	5.56	10.02	8.09	13.98	16.37	8.90	10.05	2.99	19.06	7.77	17.74	2.29	16.84
33	ER2d	ExonRegion	0	8.45	4.26	11.74	13.54	11.01	6.83	18.59	10.24	3.67	11.90	4.36	6.16	1.19	2.92	18.40	5.77	3.15	3.91	4.18	9.09	12.12	10.18	3.52	6.01	13.73	3.10	6.46	1.77	11.36
34	E2_Da	KnownBoundary	0	2.18	17.16	3.86	0.00	0.00	1.96	2.17	0.00	4.17	3.75	0.00	12.23	0.00	3.15	0.00	3.67	1.06	0.00	0.00	0.00	7.58	4.76	0.00	0.00	6.55	0.00	0.00	1.89	0.00
35	E2a_E3a	KnownJunction	0	5.31	0.00	9.29	31.49	0.00	1.46	19.40	11.30	0.00	3.99	2.97	4.46	2.55	0.00	26.71	10.33	5.85	13.87	8.09	6.70	3.25	4.28	15.17	13.52	13.37	0.00	3.78	0.00	22.48
36	E2a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	5.84	4.48	0.00	1.52	0.00	0.00	0.00	0.00	17.94	0.00	0.00	0.00	0.00	8.27	0.00	0.00	0.00	3.05	1.74	0.00	0.00	0.00	0.00
37	E2a_E3c	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	8.75	0.00	0.00	0.00	0.00	0.00	0.00	0.00	9.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	1.88
38	E2a_E4a	KnownJunction	0	2.65	0.00	1.30	0.00	0.00	3.72	12.30	2.04	0.00	5.15	6.07	2.92	0.00	1.37	17.94	0.00	0.00	0.00	0.00	0.00	3.85	1.90	0.00	0.00	5.00	0.00	5.07	0.00	0.00
39	ER2e	ExonRegion	0	2.03	4.56	4.52	1.65	2.24	2.70	2.38	0.85	1.70	5.18	0.00	5.52	0.60	1.56	0.00	3.08	1.99	3.54	2.20	0.00	8.65	2.36	0.42	1.02	2.04	0.36	1.68	1.20	2.15
40	E2_Db	NovelBoundary	0	5.60	4.85	8.30	0.00	0.00	1.69	4.98	2.39	0.00	5.99	2.97	6.23	2.99	4.96	0.00	3.29	3.47	0.00	0.00	0.00	15.24	0.00	0.00	2.81	1.89	1.76	0.00	0.00	0.00
41	E2b_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	Ix	Intron	0	1.61	1.81	0.63	0.84	1.26	2.34	1.40	0.61	1.46	3.60	0.84	1.83	0.16	0.73	0.69	1.85	2.30	2.83	2.29	0.81	2.11	0.21	0.17	0.61	0.57	0.11	0.45	0.31	0.37
43	Ix_SR1	SilentIntronRegion	0	1.61	1.81	0.63	0.84	1.26	2.35	1.40	0.61	1.46	3.60	0.84	1.83	0.16	0.73	0.69	1.85	2.30	2.83	2.29	0.81	2.11	0.21	0.17	0.61	0.57	0.11	0.45	0.31	0.37
44	E3_Aa	NovelBoundary	0	0.00	4.85	2.54	0.00	0.00	1.46	0.00	12.09	12.76	5.43	1.61	6.96	0.00	2.48	7.97	0.00	2.95	0.00	0.00	3.97	4.05	0.00	0.00	0.00	1.52	0.00	0.00	0.00	0.00
45	ER3a	ExonRegion	0	32.61	12.77	42.68	63.48	31.60	32.31	61.83	43.06	17.00	28.73	27.37	32.28	8.58	10.22	18.64	19.87	17.78	23.32	25.05	22.84	41.23	35.14	31.12	23.91	30.65	11.86	24.51	17.45	25.62
46	E3_Da	KnownBoundary	0	21.77	3.88	103.97	61.69	29.47	36.14	73.12	40.61	10.78	15.22	39.01	39.97	9.94	12.27	45.84	12.32	7.29	37.76	16.18	25.39	35.82	29.51	18.42	28.23	17.50	4.38	6.66	11.82	25.59
47	ER3b	ExonRegion	0	42.43	20.27	71.01	100.43	30.04	28.42	62.83	43.29	11.17	34.68	24.45	36.52	13.53	11.56	27.74	20.68	15.62	24.31	28.18	19.70	39.44	42.91	27.70	37.83	33.99	6.41	25.05	14.28	19.19
48	E3_Db	KnownBoundary	0	28.84	29.38	27.85	111.73	27.56	29.50	49.32	17.87	17.63	27.84	11.14	40.27	13.44	11.63	51.62	32.74	18.28	27.74	40.46	28.04	29.44	13.90	24.67	36.25	26.07	3.60	22.91	18.15	17.99
49	E3b_E3b	KnownJunction	0	5.96	8.34	6.90	10.35	0.00	12.81	25.80	8.21	1.25	3.60	0.00	9.07	2.99	0.95	8.37	6.81	1.40	13.87	0.00	7.19	3.33	4.72	6.45	8.37	9.32	0.00	11.18	0.00	9.77
50	E3b_E3c	KnownJunction	0	5.49	0.00	4.16	0.00	7.37	0.00	0.00	12.29	3.32	0.00	0.00	1.23	0.00	0.00	0.00	0.00	1.13	4.62	0.00	2.98	7.30	2.29	0.00	0.00	0.00	0.00	0.00	2.29	1.75
51	ER3c	ExonRegion	0	22.87	18.57	47.08	108.19	33.51	28.80	61.94	21.04	19.98	38.67	36.30	37.05	18.02	13.52	27.60	16.34	20.47	26.08	37.46	16.51	49.89	25.04	21.43	33.44	29.78	7.38	38.93	17.97	20.76
52	E3_Ab	KnownBoundary	0	25.54	4.85	50.50	155.51	47.75	21.91	76.27	14.23	10.45	28.84	42.04	26.87	26.05	7.73	37.47	17.67	18.03	43.02	56.42	38.54	38.83	17.70	30.14	17.47	21.06	15.02	25.74	22.47	22.55
53	E3_Ac	KnownBoundary	0	49.31	22.69	54.94	58.88	28.15	38.37	56.47	51.61	18.70	37.63	15.28	41.23	25.09	9.93	59.80	27.39	23.75	27.61	24.28	22.25	48.01	41.37	38.76	37.50	44.33	1.72	19.03	14.87	15.22
54	ER3d	ExonRegion	0	60.12	24.31	82.08	128.70	44.09	49.69	94.84	59.47	18.54	44.40	37.13	52.69	40.79	14.78	67.49	30.37	31.50	46.26	40.96	56.92	58.34	46.15	51.90	44.53	53.81	9.12	38.83	22.90	33.02
55	ER3e	ExonRegion	0	96.41	42.84	91.13	86.66	23.21	66.48	173.08	111.95	37.88	108.18	60.32	81.73	45.76	21.69	86.51	35.51	33.97	37.42	49.45	33.28	64.64	65.84	53.98	62.82	61.64	30.98	60.56	41.32	37.97
56	E3_Dc	KnownBoundary	0	2.36	3.78	1.10	0.00	0.00	10.70	4.75	2.39	9.53	3.20	2.72	10.45	6.59	1.06	0.00	0.00	9.90	5.27	8.09	3.80	4.93	7.15	2.51	8.19	0.00	2.15	2.53	2.29	10.93
57	E3c_E4a	KnownJunction	0	42.94	32.28	78.76	128.34	17.83	44.01	200.37	76.54	19.37	121.67	79.53	70.57	41.21	20.47	106.04	25.86	25.93	48.55	72.61	17.78	51.58	28.54	82.30	52.34	52.77	27.59	47.86	52.61	40.64
58	ER3f	ExonRegion	0	2.72	2.28	5.83	11.98	2.72	3.11	5.78	2.73	5.65	5.21	3.24	8.44	2.11	2.15	1.68	5.20	5.59	4.43	7.22	1.32	6.77	2.47	0.49	4.57	2.96	2.05	2.55	2.01	7.40
59	E3_Dd	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.89	2.04	6.45	1.48	0.00	1.04	0.00	0.00	5.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	Ix	Intron	0	1.85	1.17	0.50	0.93	1.68	3.32	1.22	0.63	2.87	3.42	1.69	3.29	0.64	0.57	2.34	1.54	3.54	2.93	2.89	0.59	2.33	0.23	0.39	3.06	1.48	0.47	0.32	0.91	0.69
61	Ix_SR1	SilentIntronRegion	0	2.71	0.00	0.00	0.82	1.12	3.63	2.32	0.39	1.53	2.32	1.92	3.29	0.97	0.57	1.79	2.68	2.29	3.67	1.66	0.00	2.62	0.00	0.21	2.05	1.15	1.08	0.00	0.94	0.18
62	Ix_AR1	ActiveIntronRegion	0	1.33	1.87	0.81	0.99	2.02	3.13	0.56	0.78	3.68	4.08	1.56	3.30	0.45	0.56	2.66	0.86	4.28	2.49	3.63	0.95	2.16	0.37	0.50	3.66	1.67	0.11	0.51	0.90	1.00
63	E4_Aa	NovelBoundary	0	0.00	0.00	1.25	0.00	0.00	0.00	2.23	2.04	0.00	0.00	0.00	3.55	1.72	0.97	7.97	0.00	6.08	0.00	0.00	0.00	1.89	0.00	0.00	0.00	1.82	0.00	7.60	0.00	1.22
64	ER4a	ExonRegion	0	32.31	14.05	16.20	45.44	22.11	27.28	80.22	56.95	12.77	42.03	25.42	23.07	13.62	12.96	31.15	15.05	6.15	11.13	19.48	13.98	26.26	29.30	35.22	30.24	25.41	18.52	26.63	14.00	19.71
65	E4_Da	KnownBoundary	0	11.21	4.17	34.93	0.00	6.34	10.59	7.44	23.04	27.04	5.23	4.59	33.95	27.77	7.58	9.77	3.75	22.69	0.00	0.00	3.72	7.10	13.42	13.30	10.95	19.85	6.35	9.54	4.36	8.45
66	ER4b	ExonRegion	0	61.30	27.42	19.01	75.07	38.97	36.41	82.78	72.31	15.49	63.27	34.36	21.93	13.15	8.07	72.54	27.47	7.70	14.53	26.43	10.20	40.30	52.99	33.85	39.83	32.75	11.48	32.89	8.05	15.48
67	E4_Db	KnownBoundary	0	32.03	28.50	48.78	28.47	5.75	21.49	35.19	45.64	23.60	26.24	19.20	24.10	24.97	11.63	23.72	16.75	26.43	0.00	0.00	20.67	28.72	21.44	19.60	28.11	28.49	19.35	19.13	4.13	27.93
68	ER4c	ExonRegion	0	39.61	31.94	35.86	58.03	26.77	42.44	97.19	84.00	25.11	48.40	31.30	28.16	19.82	10.45	44.04	17.04	11.02	12.85	27.70	19.05	34.45	41.58	24.81	38.48	29.42	22.82	32.63	16.21	21.28
69	E4_Dc	KnownBoundary	0	2.54	0.00	0.00	0.00	11.20	3.57	0.00	2.24	3.11	1.60	0.00	0.00	1.34	1.31	0.00	0.00	0.00	0.00	0.00	0.00	3.49	4.08	0.00	2.93	0.00	1.67	6.41	0.00	3.30
70	E4_Dd	KnownBoundary	0	0.00	3.78	7.18	0.00	0.00	4.91	4.41	5.82	2.65	10.11	1.36	8.13	0.00	1.93	0.00	0.00	2.27	0.00	0.00	3.31	5.54	0.00	1.97	5.86	0.00	3.35	4.77	0.00	0.00
71	ER4d	ExonRegion	0	6.43	13.14	5.61	0.00	14.94	11.00	6.05	7.36	12.36	17.33	2.38	7.42	1.30	3.63	11.20	0.00	3.01	2.73	13.58	5.62	7.13	3.61	0.00	15.06	1.43	7.86	9.16	0.00	1.34
72	ER4e	ExonRegion	0	1.68	12.33	3.64	3.63	8.00	6.23	5.48	3.81	3.77	11.03	4.47	4.83	0.00	2.15	5.42	2.82	3.54	5.50	11.96	2.10	8.33	2.55	0.92	3.92	0.72	2.28	8.03	2.48	0.64