Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	EOMES	Gene	0	36.72	96.09	110.36	13.40	15.88	334.93	50.28	6.52	257.32	173.92	76.02	23.42	44.33	282.70	108.42	63.97	89.19	29.38	56.64	14.81	80.69	227.79	42.38	190.91	25.26	76.86	64.39	5.44	82.19
2	461503	Transcript	0	1.79	2.66	5.77	0.85	0.58	21.81	0.48	0.00	2.98	9.33	2.02	0.15	0.39	15.16	2.50	6.13	6.53	0.73	0.62	1.63	7.26	16.51	1.95	1.25	1.02	5.91	4.15	0.00	3.70
3	295743	Transcript	0	10.17	44.53	24.01	3.70	5.63	126.34	20.65	2.01	195.36	47.75	28.85	6.85	17.06	89.35	72.03	22.62	33.90	9.71	23.99	8.18	29.05	62.91	14.40	85.27	7.23	15.68	18.29	1.07	30.14
4	449599	Transcript	0	84.96	141.39	181.63	16.38	8.70	531.50	74.67	10.68	293.71	320.59	106.25	39.74	93.41	622.51	119.75	89.01	190.21	49.56	95.57	11.97	131.84	436.96	76.02	280.77	43.00	171.33	97.53	6.15	162.29
5	ER1a	ExonRegion	0	3.58	5.31	11.54	1.71	1.16	40.05	0.96	0.00	5.96	18.66	4.04	0.29	0.79	26.09	5.00	12.25	10.94	1.47	1.25	3.26	14.52	29.14	3.90	2.49	2.03	11.82	8.30	0.00	7.39
6	E1_Ab	KnownBoundary	0	0.00	0.00	2.59	0.00	0.00	85.48	0.00	0.00	9.74	41.78	3.20	0.00	1.72	26.45	8.37	27.39	10.13	0.00	8.09	4.05	40.71	34.66	6.99	11.07	3.75	18.88	0.00	0.00	3.10
7	ER1b	ExonRegion	0	1.64	0.19	2.89	0.00	0.00	53.05	1.72	0.00	7.48	32.02	5.97	0.00	0.44	26.10	11.70	21.92	9.91	9.31	1.20	0.12	20.16	20.41	6.81	2.12	3.45	23.85	9.91	0.14	9.69
8	E1_Da	KnownBoundary	0	2.24	0.00	1.47	0.00	0.00	18.45	0.00	0.00	2.89	12.46	5.50	0.00	0.00	21.87	9.37	3.52	12.61	4.62	0.00	0.00	15.44	6.56	6.75	0.00	1.52	11.67	10.14	0.00	7.76
9	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	3.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.23	0.00	0.00	2.12	0.00	0.00	0.00	0.00	3.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER1c	ExonRegion	0	2.40	6.90	17.42	0.00	2.11	23.04	0.87	0.06	3.21	7.92	3.26	1.35	0.30	28.53	9.49	9.14	8.69	2.47	0.00	1.86	6.43	15.64	4.83	2.79	2.59	6.55	3.74	0.00	7.47
11	E1_Ac	KnownBoundary	0	7.96	9.70	31.49	0.00	0.00	22.94	0.00	0.00	8.77	7.59	4.84	1.11	3.06	41.34	24.52	11.47	3.76	0.00	0.00	2.98	13.64	30.14	0.00	0.00	3.52	23.82	4.37	0.00	3.37
12	ER1d	ExonRegion	0	18.92	14.85	46.19	3.26	4.09	87.65	15.15	2.70	17.34	39.90	12.53	5.44	8.58	81.54	19.44	31.17	24.94	13.96	11.62	4.64	19.46	115.80	23.01	23.03	4.53	33.91	10.50	2.19	19.55
13	E1_Db	NovelBoundary	0	0.00	0.00	1.12	0.00	0.00	3.91	0.00	0.00	2.62	0.00	3.23	0.00	0.00	5.47	0.00	3.82	1.98	0.00	0.00	0.00	0.00	2.33	0.00	3.05	0.00	0.00	0.00	0.00	0.00
14	E1b_E2a	KnownJunction	0	58.16	61.66	121.26	0.00	29.47	243.56	39.59	12.09	79.66	167.61	87.50	32.56	56.56	291.89	41.86	57.53	90.44	28.51	40.24	24.48	48.01	293.11	60.63	130.04	28.64	106.04	102.77	9.88	87.25
15	I1	Intron	0	1.04	3.60	1.30	0.00	0.48	13.72	1.18	0.36	7.54	2.39	0.52	0.09	0.00	6.25	2.19	1.59	2.11	0.94	3.58	0.00	1.46	1.40	0.35	2.93	0.28	1.07	0.09	0.00	1.56
16	I1_SR1	SilentIntronRegion	0	0.91	3.91	1.22	0.00	0.59	13.44	1.35	0.45	8.69	2.10	0.51	0.11	0.00	6.37	2.73	1.83	2.45	0.94	4.07	0.00	1.21	1.42	0.33	3.00	0.35	1.34	0.11	0.00	1.38
17	I1_AR1	ActiveIntronRegion	0	1.59	2.39	1.66	0.00	0.00	14.97	0.50	0.00	2.92	3.57	0.59	0.00	0.00	5.82	0.00	0.61	0.74	0.95	1.58	0.00	2.47	1.34	0.45	2.66	0.00	0.00	0.00	0.00	2.31
18	E2_Aa	NovelBoundary	0	8.32	4.85	0.00	0.00	0.00	39.10	0.00	0.00	14.86	7.55	0.00	0.00	1.78	10.32	0.00	3.44	5.09	0.00	0.00	0.00	11.47	0.00	0.00	2.99	0.00	2.15	0.00	0.00	0.00
19	ER2a	ExonRegion	0	65.70	96.72	169.64	8.96	4.76	447.65	48.60	9.87	129.73	240.01	81.35	33.28	51.01	410.59	54.38	93.98	106.96	48.32	60.38	23.72	104.86	334.48	65.05	159.57	30.83	118.10	44.75	8.48	92.76
20	E2_Da	NovelBoundary	0	7.55	0.00	5.13	0.00	0.00	14.12	0.00	0.00	3.38	9.07	10.82	0.00	1.85	12.41	8.17	3.21	7.70	0.00	0.00	0.00	1.93	2.48	0.00	8.91	0.00	1.93	0.00	0.00	0.00
21	E2a_E3a	KnownJunction	0	57.63	96.56	153.70	8.84	6.78	456.96	54.47	11.99	136.64	163.10	79.37	29.04	34.20	470.32	25.11	99.83	106.04	32.36	32.37	41.27	92.21	395.02	66.29	197.75	32.69	75.74	38.52	6.34	69.96
22	E2a_E4a	NovelJunction	0	5.72	0.00	2.99	10.78	0.00	10.55	2.92	0.00	10.96	0.00	1.39	0.00	0.00	14.96	9.17	3.82	0.95	0.00	0.00	0.00	0.00	18.62	0.00	8.31	0.00	1.89	1.89	0.00	1.62
23	E2a_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	I2	Intron	0	9.81	6.73	5.77	0.54	0.37	41.34	2.72	0.00	16.99	6.61	2.23	0.28	2.24	20.91	7.58	5.21	9.85	2.89	10.54	0.83	3.53	4.73	0.00	10.81	0.43	6.37	1.37	0.37	0.45
25	I2_AR1	ActiveIntronRegion	0	11.11	3.01	3.91	0.00	0.00	41.72	1.89	0.00	25.70	2.94	1.34	0.00	0.00	8.66	4.73	6.80	2.32	0.33	17.23	0.00	4.88	3.67	0.00	7.46	0.00	7.71	0.86	0.76	0.00
26	I2_SR1	SilentIntronRegion	0	9.59	7.47	6.14	0.64	0.44	41.42	2.89	0.00	15.39	7.34	2.41	0.33	2.67	23.33	8.15	4.92	11.33	3.39	9.30	0.99	3.28	4.95	0.00	11.49	0.51	6.13	1.48	0.30	0.54
27	E3_Aa	NovelBoundary	0	11.38	4.07	1.00	0.00	0.00	41.90	5.72	0.00	7.83	11.58	5.98	0.00	4.62	21.09	9.97	0.00	8.35	0.00	8.09	0.00	4.09	9.53	0.00	19.26	3.86	3.82	0.00	0.00	1.32
28	ER3a	ExonRegion	1	71.67	175.96	233.98	20.44	17.52	741.21	64.95	11.91	214.72	443.68	201.34	51.96	77.48	662.49	59.72	135.31	172.39	61.20	96.19	32.23	193.45	460.27	98.19	273.42	55.15	175.56	124.18	17.28	187.47
29	E3_Da	NovelBoundary	0	8.02	8.63	8.27	0.00	0.00	64.92	5.78	0.00	17.02	11.98	2.78	0.00	1.94	47.77	28.30	15.22	12.65	13.87	24.28	7.53	7.58	0.00	0.00	21.83	1.93	9.96	0.00	0.00	4.46
30	E3a_E4a	KnownJunction	1	81.64	242.76	245.64	39.90	41.85	953.55	73.46	9.36	311.92	582.77	239.54	56.38	118.14	816.16	58.80	144.20	186.85	83.86	104.98	52.02	228.63	682.20	108.05	367.93	55.31	239.59	119.97	19.95	201.55
31	E3a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	0.00
32	I3	Intron	0	7.81	11.26	1.71	2.45	0.56	81.21	6.65	0.42	25.71	8.22	6.36	0.99	1.47	32.94	25.43	15.82	13.93	5.30	13.09	2.51	8.77	2.87	0.00	20.82	1.30	4.83	1.04	0.00	1.37
33	I3_AR1	ActiveIntronRegion	0	1.75	1.19	0.00	0.00	0.45	9.75	1.10	0.00	0.61	0.00	0.00	0.11	0.00	3.13	0.00	0.00	2.46	0.00	0.00	0.00	0.00	1.15	0.00	1.37	0.78	0.00	0.00	0.00	0.00
34	I3_SR1	SilentIntronRegion	0	8.00	11.57	1.76	2.52	0.56	83.38	6.83	0.43	26.46	8.46	6.55	1.01	1.52	33.84	26.19	16.29	14.29	5.45	13.48	2.58	9.03	2.93	0.00	21.40	1.32	4.98	1.07	0.00	1.41
35	E4_Aa	NovelBoundary	0	16.57	16.38	6.45	10.78	0.00	129.22	22.43	0.00	30.30	19.29	8.83	0.00	1.43	53.82	68.57	13.92	40.31	14.64	16.18	0.00	11.55	11.47	0.00	47.49	1.74	2.19	0.00	0.00	5.25
36	ER4a	ExonRegion	0	67.45	212.97	241.06	60.21	54.46	876.90	88.09	10.92	240.77	518.70	225.84	52.07	107.73	769.63	71.50	126.03	175.10	89.52	127.78	31.39	188.62	542.20	99.64	357.88	45.60	207.14	139.68	14.78	184.95
37	ER4b	ExonRegion	0	65.80	188.89	277.83	22.45	30.43	819.23	77.88	12.02	281.50	409.73	178.17	54.63	81.65	722.90	117.53	123.61	210.99	60.38	111.29	20.42	190.68	434.03	97.66	312.18	55.12	158.03	113.17	15.26	191.69
38	E4_Db	NovelBoundary	0	2.36	4.65	9.32	0.00	0.00	48.61	0.00	2.44	3.11	1.56	4.27	0.00	0.00	25.10	8.37	6.50	14.20	4.62	8.09	0.00	10.83	2.48	0.00	18.18	0.00	10.64	2.34	0.00	0.00
39	E4b_E5a	KnownJunction	0	55.68	255.95	208.39	10.57	7.37	820.38	108.25	7.51	311.29	467.48	170.35	59.91	94.48	673.87	85.91	136.86	185.30	56.12	153.76	27.37	172.64	405.08	115.34	320.79	51.22	171.23	143.68	14.56	190.95
40	E4b_E6a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	7.57	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	I4	Intron	0	0.00	7.64	0.99	0.00	0.00	18.75	2.39	0.00	3.66	6.85	2.12	0.00	0.00	16.13	5.47	2.12	5.31	4.57	5.68	0.00	0.00	3.21	0.00	5.10	0.85	0.00	0.00	0.00	0.00
42	I4_AR1	ActiveIntronRegion	0	0.00	7.82	1.00	0.00	0.00	19.16	2.45	0.00	3.73	7.01	2.17	0.00	0.00	16.50	5.60	2.17	5.43	4.68	5.82	0.00	0.00	3.26	0.00	5.22	0.87	0.00	0.00	0.00	0.00
43	E5_Aa	NovelBoundary	0	2.30	13.57	0.00	10.35	0.00	59.78	5.15	10.15	10.11	2.04	0.00	0.00	0.00	25.79	19.53	16.37	10.78	13.87	8.09	4.13	3.93	2.09	2.46	16.93	7.27	2.19	0.00	0.00	0.00
44	ER5a	ExonRegion	0	75.44	206.37	194.70	7.19	16.63	749.99	116.07	19.60	306.74	484.57	196.27	52.79	103.52	705.30	102.44	123.31	195.30	67.13	115.92	18.00	184.60	467.99	107.59	350.43	58.21	199.39	106.79	15.98	210.85
45	E5_Da	NovelBoundary	0	8.14	0.00	4.21	0.00	0.00	46.73	2.80	2.04	4.35	3.60	0.00	0.00	0.00	16.88	16.94	3.82	18.53	4.62	16.18	0.00	3.41	0.00	0.00	6.10	2.88	0.00	0.00	0.00	0.00
46	E5a_E6a	KnownJunction	0	95.26	147.36	177.57	28.47	6.48	560.74	89.08	15.68	323.71	346.77	90.25	44.28	106.20	660.16	128.16	109.39	194.37	51.50	121.39	12.40	136.30	476.55	92.39	328.99	48.64	189.04	81.70	8.31	174.18
47	E5a_E6b	KnownJunction	0	2.48	4.56	13.83	0.00	0.00	64.80	5.26	2.54	23.05	23.49	28.85	1.42	7.52	42.90	0.00	3.60	15.85	5.39	8.09	0.00	7.38	31.65	13.99	27.16	1.44	3.78	0.00	0.00	11.98
48	I5	Intron	0	3.96	8.71	2.06	1.65	0.75	34.57	2.17	0.00	11.94	4.33	2.75	0.57	0.15	13.98	7.02	6.00	4.25	1.83	6.88	0.64	4.06	0.55	0.14	8.44	0.22	1.57	0.42	0.13	1.44
49	I5_SR1	SilentIntronRegion	0	4.18	9.24	2.16	1.81	0.82	36.85	2.37	0.00	12.90	4.61	2.96	0.62	0.16	14.88	7.31	6.50	4.54	2.00	7.05	0.69	4.37	0.61	0.15	8.64	0.24	1.72	0.46	0.14	1.58
50	I5_AR1	ActiveIntronRegion	0	4.29	6.57	2.24	0.00	0.00	23.79	0.00	0.00	3.72	2.89	1.19	0.00	0.00	10.68	9.91	2.53	2.54	0.00	13.58	0.00	1.43	0.00	0.00	13.90	0.00	0.00	0.00	0.00	0.00
51	I5_AR2	ActiveIntronRegion	0	1.51	4.25	1.32	0.00	0.00	13.10	0.00	0.00	2.11	1.87	0.49	0.00	0.00	5.44	4.94	0.00	1.36	0.00	5.59	0.00	1.09	0.00	0.00	9.11	0.00	0.00	0.00	0.00	0.00
52	E6_Aa	NovelBoundary	0	8.38	4.65	4.01	0.00	0.00	43.74	2.52	0.00	32.77	3.91	5.44	0.00	2.74	23.62	8.37	7.11	3.69	0.00	0.00	0.00	14.36	2.48	2.41	13.10	1.93	5.62	0.00	1.84	1.42
53	ER6a	ExonRegion	0	74.65	135.42	185.68	4.29	10.91	502.25	60.26	5.68	263.72	294.41	122.25	35.21	80.63	584.86	111.34	68.64	186.04	47.62	69.76	11.53	127.39	397.38	59.64	232.55	37.36	153.61	113.37	3.99	150.39
54	E6_Ab	KnownBoundary	0	63.82	132.43	203.23	9.27	21.81	416.79	19.85	3.98	205.68	204.72	120.24	34.58	71.46	483.15	166.63	52.78	174.72	61.90	16.18	11.41	92.09	369.10	36.99	179.87	32.51	78.96	96.61	2.29	106.70
55	ER6b	ExonRegion	0	48.53	142.56	159.43	23.05	27.25	464.95	77.92	9.86	407.05	246.12	113.20	34.55	67.93	383.55	175.89	83.47	126.36	37.98	86.20	19.18	110.58	310.41	54.00	316.81	39.30	103.59	107.07	6.90	116.54
56	E6_Da	KnownBoundary	0	23.59	48.28	75.97	0.00	39.94	200.05	33.07	2.49	398.41	95.47	27.33	9.28	25.48	129.62	125.17	41.23	43.98	33.13	80.70	12.32	42.64	104.19	22.56	172.75	24.93	41.50	15.95	3.86	47.64
57	ER6c	ExonRegion	0	25.63	122.12	40.77	11.11	14.79	291.18	55.81	3.42	559.82	111.84	54.45	17.78	43.36	196.63	206.61	55.11	77.16	21.27	63.88	22.69	73.35	141.44	24.38	225.86	17.66	36.72	51.13	3.20	70.97
58	IG26_AR2	ActiveIntergenicRegion	0	0.34	0.40	2.80	0.27	0.00	12.98	4.13	0.28	4.90	4.69	4.59	0.00	1.31	3.31	6.75	2.24	1.14	0.29	1.02	0.68	2.50	5.21	0.26	10.80	0.00	0.29	0.75	0.00	1.82
59	IG26_SR2	SilentIntergenicRegion	0	5.72	0.00	4.52	7.31	0.00	40.20	17.84	1.84	23.19	12.25	15.83	2.51	7.01	15.97	32.92	8.05	10.11	4.30	6.99	1.11	3.80	20.59	2.36	25.36	0.00	8.43	15.43	0.00	6.83
60	IG26_AR1	ActiveIntergenicRegion	0	12.39	4.56	17.32	5.98	3.53	38.62	32.97	4.42	41.43	24.17	10.93	3.59	9.08	27.23	34.39	15.16	19.39	4.55	5.73	4.72	8.88	55.28	4.18	41.12	1.81	5.21	5.40	0.00	7.59