Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	DPH3	Gene	0	178.86	130.22	76.59	98.44	254.05	128.74	438.71	106.74	112.97	111.25	105.70	185.85	119.87	93.08	167.36	105.07	102.33	82.52	177.80	224.28	102.07	173.12	72.19	86.78	112.58	67.65	127.68	55.38	75.57
2	488423	Transcript	1	231.12	53.26	13.65	18.36	27.80	49.94	122.67	107.48	44.11	31.88	31.00	39.44	78.25	46.39	96.40	40.93	25.86	46.27	87.45	92.43	57.93	202.83	28.72	29.87	88.18	44.63	3.48	4.78	44.36
3	383775	Transcript	1	440.98	71.55	16.89	59.96	13.41	192.45	489.76	309.29	181.22	96.55	50.68	118.55	88.65	84.62	120.59	127.29	36.01	36.99	121.39	279.69	341.06	592.74	82.59	77.94	78.91	88.23	51.49	12.36	15.55
4	285082	Transcript	0	3.58	3.27	6.05	0.00	41.61	5.26	15.05	3.88	3.24	2.40	4.03	3.95	7.67	1.00	4.56	12.67	0.22	3.28	5.26	2.77	1.58	11.39	2.86	2.03	8.12	1.37	3.02	12.27	11.66
5	462982	Transcript	0	0.98	0.25	0.00	0.00	0.99	0.28	1.22	0.45	1.00	0.44	0.25	0.13	0.02	0.42	0.08	0.44	0.30	0.42	0.03	0.05	0.04	0.06	0.01	0.00	0.21	0.01	0.01	0.01	0.02
6	IG17_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.01	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	IG17_SR1	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.58	1.94	0.00	0.00	0.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	ER1a	ExonRegion	0	4.82	0.00	3.09	5.48	16.19	2.06	10.58	5.52	1.97	1.08	2.68	2.47	0.00	0.91	0.00	0.63	3.26	4.09	3.39	0.00	1.07	1.35	3.62	0.00	0.00	7.07	4.12	1.22	0.00
9	ER1b	ExonRegion	0	420.78	89.67	209.73	209.59	534.74	134.09	561.47	208.69	111.50	139.91	92.56	228.37	243.22	103.09	241.93	155.18	119.53	124.35	135.80	177.66	181.75	444.85	213.63	49.94	149.16	181.67	170.07	94.53	168.30
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.89	0.00	0.00	0.00	0.00	0.00	0.00	1.80	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00
11	E1a_E3a	KnownJunction	1	688.54	159.77	37.87	49.61	67.20	147.75	357.42	316.91	130.37	94.55	90.32	114.61	234.76	138.26	289.21	122.17	74.33	134.72	258.96	274.48	172.72	607.13	82.54	89.60	263.11	126.81	6.31	13.12	133.08
12	E1a_E4a	KnownJunction	1	440.98	71.55	16.89	59.96	13.41	192.45	489.76	309.29	181.22	96.55	50.68	118.55	88.65	84.62	120.59	127.29	36.01	36.99	121.39	279.69	341.06	592.74	82.59	77.94	78.91	88.23	51.49	12.36	15.55
13	ER1c	ExonRegion	1	994.04	216.80	24.55	87.75	72.86	292.12	757.67	539.90	240.01	181.55	138.05	198.06	298.77	210.66	351.44	197.71	102.68	161.02	308.89	502.06	425.24	1076.69	135.17	150.85	306.95	177.99	54.72	26.28	125.33
14	ER1d	ExonRegion	0	4.57	2.66	2.17	0.00	19.27	5.02	9.05	3.32	2.71	2.75	0.75	1.45	3.17	0.86	0.74	4.07	0.44	1.94	2.42	2.57	1.39	6.64	0.94	1.01	4.72	2.75	3.56	5.44	6.69
15	E1b_E3a	KnownJunction	0	2.60	3.88	9.94	0.00	63.96	5.49	21.06	4.43	3.78	2.04	7.31	6.45	12.16	1.13	8.37	21.27	0.00	4.62	8.09	2.98	1.76	16.14	4.78	3.05	11.52	0.00	2.48	19.10	16.64
16	E1b_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	7.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E2_Aa	NovelBoundary	0	5.31	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER2a	ExonRegion	0	1.97	0.50	0.00	0.00	1.98	0.56	2.43	0.90	0.24	0.87	0.50	0.25	0.04	0.85	0.15	0.89	0.59	0.84	0.05	0.11	0.09	0.13	0.02	0.00	0.42	0.02	0.01	0.02	0.03
19	E2_Da	NovelBoundary	0	2.77	4.46	0.00	0.00	0.00	1.96	0.00	1.89	0.00	3.75	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	3.26	3.65	0.00	1.71	0.00
20	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3a	ExonRegion	0	516.03	180.54	16.55	32.47	73.59	174.69	615.82	219.70	152.98	189.79	135.58	226.40	365.33	149.84	469.56	192.20	139.76	197.85	285.01	275.52	191.90	468.71	169.95	84.93	304.52	202.51	86.16	92.56	244.08
22	E3_Da	NovelBoundary	0	4.66	16.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	3.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.52	5.45	0.00	0.00	0.00
23	E3a_E4a	KnownJunction	1	429.24	256.05	51.92	28.90	81.20	215.13	801.58	195.43	203.94	297.08	241.59	389.21	483.81	164.93	491.72	165.31	207.33	99.02	379.67	192.28	182.94	333.51	399.07	80.69	320.96	391.85	208.93	262.09	464.17
24	I3_SR1	SilentIntronRegion	0	1.20	0.90	0.35	0.00	0.68	2.78	0.00	0.00	0.94	0.81	0.33	0.17	0.00	1.20	0.32	0.00	1.77	1.34	1.11	0.96	1.39	0.13	0.00	0.90	0.50	0.11	0.00	0.68	0.19
25	E4_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.92	0.00	0.00	1.52	0.00	0.00	1.27	0.00	1.11	0.00	3.75	4.59	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.44	0.00	0.00
26	ER4a	ExonRegion	0	426.14	330.84	159.18	167.69	502.99	314.77	957.09	179.08	230.13	261.45	232.89	334.13	329.23	208.30	426.45	209.51	175.09	211.86	490.37	539.56	326.17	359.86	187.31	145.84	259.50	118.97	273.12	82.15	166.93
27	E4_Da	KnownBoundary	1	111.13	226.19	40.09	34.30	286.64	232.28	709.81	40.51	136.21	107.21	124.61	214.24	96.65	87.10	220.85	124.62	141.83	118.28	234.68	334.93	193.85	81.00	77.27	48.39	71.11	22.19	161.52	25.93	69.36
28	ER4b	ExonRegion	0	135.25	135.44	36.62	125.51	303.02	162.92	466.60	53.17	72.31	107.62	128.38	196.08	78.46	88.75	115.18	110.34	121.23	78.38	213.12	258.81	98.00	95.77	48.15	81.48	103.47	39.59	134.97	42.61	52.79
29	E4_Db	KnownBoundary	0	172.95	211.84	36.77	168.02	303.29	175.88	442.61	85.45	100.07	141.73	188.29	295.60	95.02	131.96	69.56	135.10	124.30	66.78	250.87	318.23	104.53	135.06	65.85	122.20	107.52	32.40	247.84	65.91	78.47
30	ER4c	ExonRegion	0	137.66	117.46	76.26	90.44	223.86	106.07	399.78	113.15	122.46	99.20	96.65	187.90	91.10	87.14	144.56	96.20	101.82	65.80	142.05	200.70	66.20	150.68	52.46	98.74	97.16	62.31	121.36	59.95	62.91
31	ER4d	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	1.43	0.00	0.00	0.00	0.00
32	IG16_AR10	ActiveIntergenicRegion	0	0.75	4.90	0.67	5.30	11.55	7.25	5.32	1.39	1.03	0.75	3.64	2.44	1.71	2.29	1.38	3.08	0.52	4.75	9.51	3.18	0.74	0.39	1.23	4.05	2.30	0.27	4.54	0.00	6.15
33	IG16_AR9	ActiveIntergenicRegion	0	4.20	9.30	0.79	0.00	7.84	8.19	14.15	1.84	6.10	3.87	7.06	2.79	1.80	3.76	3.69	2.26	5.73	6.39	5.01	6.52	2.58	1.42	2.19	9.70	1.19	1.61	14.18	0.00	5.23
34	IG16_AR8	ActiveIntergenicRegion	0	2.76	1.17	0.00	0.00	8.54	6.48	8.35	0.00	2.81	7.63	2.64	4.59	2.60	1.81	0.00	12.83	9.02	3.70	4.53	2.81	4.08	1.80	1.81	5.07	0.31	2.92	0.78	0.00	4.70
35	IG16_SR4	SilentIntergenicRegion	0	0.60	0.00	0.65	0.29	2.99	11.22	20.04	1.25	4.56	9.93	4.55	8.61	2.78	1.87	3.14	8.15	6.81	1.91	0.00	4.10	1.26	2.74	3.15	2.67	5.69	4.59	6.23	0.00	4.59
36	IG16_AR7	ActiveIntergenicRegion	0	2.14	0.00	1.12	12.54	0.00	17.28	15.84	1.84	4.49	6.39	9.01	6.36	3.90	0.91	11.20	0.00	5.01	0.39	0.00	5.62	2.85	3.61	4.13	6.45	5.92	3.37	3.66	0.00	1.34
37	IG16_SR3	SilentIntergenicRegion	0	4.00	2.33	1.86	29.44	0.00	12.26	9.23	2.18	7.75	3.76	5.39	2.34	3.21	1.55	8.25	0.00	3.98	1.94	0.00	5.03	3.53	2.37	3.24	10.42	3.80	6.70	6.65	0.47	2.79
38	IG16_AR6	ActiveIntergenicRegion	0	2.84	8.02	1.37	4.33	2.61	4.28	8.60	2.03	10.34	8.59	3.32	4.94	6.82	4.96	8.46	3.48	3.34	2.42	4.09	4.86	2.38	5.55	2.74	9.43	4.34	2.16	5.39	2.22	3.24