Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	BHLHE40	Gene	0	358.86	781.80	881.18	20.78	53.49	338.81	118.39	228.95	304.19	502.21	351.33	196.96	564.96	529.61	50.62	241.64	198.08	775.87	206.75	48.32	440.02	338.50	279.86	266.05	306.52	287.25	354.91	78.80	338.27
2	256495	Transcript	0	308.21	522.09	738.87	15.18	51.63	245.80	86.97	167.33	219.63	348.33	291.63	140.11	386.68	422.69	31.31	180.48	149.31	645.69	163.34	41.02	306.92	274.99	208.11	176.72	231.17	198.58	251.19	57.99	202.72
3	457655	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	467610	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	460806	Transcript	0	48.94	56.26	22.35	0.00	0.00	15.01	8.13	6.24	6.56	22.86	13.19	3.37	8.18	26.60	4.95	21.47	4.05	48.84	16.34	4.47	21.92	4.12	5.42	11.00	13.26	12.87	1.72	3.69	7.30
6	ER1a	ExonRegion	0	1.96	0.33	0.73	0.00	0.02	0.88	1.05	0.63	0.77	0.09	1.54	0.05	1.19	0.42	0.00	2.11	0.07	4.09	0.55	0.00	0.54	0.00	0.82	1.85	0.00	1.74	0.01	0.28	0.23
7	E1_Ab	KnownBoundary	0	2.42	8.24	1.17	0.00	0.00	0.00	0.00	0.00	0.00	1.92	1.55	0.00	3.12	1.09	0.00	13.39	0.00	23.25	0.00	0.00	0.00	2.38	2.51	0.00	0.00	2.19	0.00	0.00	0.00
8	E1_Ac	KnownBoundary	0	8.08	11.44	29.10	0.00	7.37	7.52	2.92	0.00	0.00	10.83	10.06	4.01	8.95	4.23	7.57	6.88	3.35	23.12	0.00	0.00	3.69	2.09	9.31	6.04	0.00	2.19	2.53	1.93	2.74
9	ER1b	ExonRegion	0	5.40	12.35	17.28	0.00	4.98	6.65	2.02	0.00	0.00	6.53	7.28	2.52	9.72	2.98	4.93	10.73	2.32	25.55	2.35	0.11	2.23	0.94	7.81	3.70	0.34	1.57	1.98	0.78	1.23
10	ER1c	ExonRegion	0	210.82	236.87	351.32	14.32	33.46	150.39	83.24	101.19	72.49	242.66	139.75	112.27	378.77	267.85	21.04	194.47	121.61	540.15	79.32	27.97	189.51	185.46	193.18	74.06	109.29	273.99	133.10	64.38	346.79
11	E1_Da	NovelBoundary	0	18.93	8.43	10.76	0.00	5.75	3.38	0.00	0.00	3.84	9.23	0.00	3.04	1.31	11.48	0.00	16.22	2.30	4.62	0.00	0.00	10.67	10.26	2.31	0.00	12.24	3.26	0.00	0.00	1.29
12	E1a_E2a	KnownJunction	0	375.97	463.42	918.64	7.76	27.41	174.11	83.82	195.43	108.93	308.70	350.38	185.24	357.01	511.93	24.32	196.07	189.84	633.03	72.83	21.25	228.91	353.25	273.04	154.74	183.74	160.97	259.62	70.36	157.38
13	E2_Aa	NovelBoundary	0	73.26	30.44	39.52	10.35	0.00	15.19	0.00	6.37	0.00	5.67	1.46	7.71	6.21	37.13	0.00	17.37	11.68	94.27	0.00	7.36	9.27	25.43	2.22	10.65	16.86	10.21	0.00	0.00	0.00
14	ER2a	ExonRegion	0	510.27	572.98	1205.11	14.73	65.26	269.99	105.68	241.65	158.59	401.82	388.06	195.32	408.78	670.77	12.08	271.44	207.41	916.03	181.36	44.21	299.15	410.84	315.00	185.09	298.98	216.82	291.37	63.94	192.49
15	E2_Da	KnownBoundary	0	102.58	9.60	40.01	0.00	6.48	17.69	5.66	20.16	1.25	16.10	8.83	11.51	1.40	41.61	8.17	36.57	10.49	125.22	16.18	0.00	11.39	18.13	5.81	8.31	8.52	22.62	0.00	6.25	5.08
16	E2a_E2c	KnownJunction	0	573.46	496.39	1192.28	21.57	90.34	322.21	120.15	231.21	214.84	405.97	441.97	195.09	448.46	698.97	19.53	266.06	226.22	1069.57	218.50	66.82	364.64	455.06	307.96	165.57	305.66	248.22	264.99	81.73	182.50
17	E2a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER2b	ExonRegion	0	111.62	29.37	29.61	5.46	4.81	15.22	4.61	10.10	3.52	21.48	6.28	13.44	5.50	43.97	7.86	21.18	10.75	119.39	18.40	9.34	15.43	28.55	5.14	22.23	16.40	22.88	3.23	8.20	7.81
19	E2_Ab	KnownBoundary	0	101.22	34.71	30.82	0.00	0.00	23.98	0.00	17.07	2.83	22.77	2.66	7.17	3.50	43.38	0.00	31.82	11.48	136.39	32.37	10.83	12.43	27.61	7.39	38.34	15.80	1.63	0.00	11.91	6.93
20	ER2c	ExonRegion	0	91.92	25.80	39.79	3.29	2.96	18.83	3.83	12.38	5.03	23.23	8.97	10.54	9.11	47.69	12.34	18.93	11.37	125.78	12.20	11.36	19.87	33.55	7.39	23.51	17.21	10.09	6.34	5.32	12.31
21	E2_Ac	KnownBoundary	0	110.30	9.70	30.00	10.78	13.56	11.93	2.86	8.91	2.68	16.14	7.72	7.38	1.24	41.30	24.72	16.45	7.74	97.86	8.09	3.47	14.24	11.67	6.55	10.23	14.81	5.54	8.35	1.80	9.24
22	ER2d	ExonRegion	0	693.34	673.14	1089.22	50.02	120.89	367.73	150.40	303.68	226.22	537.03	427.25	270.98	547.46	878.40	40.25	284.25	242.27	1095.20	226.96	90.50	426.89	522.34	391.60	267.86	389.24	303.74	331.58	95.93	249.39
23	E2_Db	KnownBoundary	0	714.02	815.16	950.40	70.75	111.12	395.34	141.89	321.09	243.10	515.54	373.76	314.36	605.58	939.48	94.08	349.52	261.27	1305.11	258.96	74.26	461.87	598.67	419.46	306.79	392.87	280.01	303.85	97.59	259.02
24	ER2e	ExonRegion	0	726.17	892.57	993.52	57.13	92.78	390.24	132.98	420.97	245.49	530.54	443.35	327.43	694.81	1046.73	45.68	354.30	282.27	1115.80	259.53	77.64	510.16	643.30	459.69	324.49	436.84	294.48	331.91	89.24	285.21
25	E2_Dc	NovelBoundary	0	68.13	40.43	23.22	0.00	7.37	22.79	5.61	19.11	2.80	32.04	1.52	6.63	4.68	31.73	0.00	21.50	1.06	119.57	7.87	3.56	11.19	4.96	4.78	23.45	14.66	13.56	2.53	0.00	1.68
26	E2c_E3a	KnownJunction	0	681.75	1054.24	996.87	47.67	96.09	412.99	153.16	470.49	310.86	536.63	500.40	310.78	745.64	1087.47	35.08	407.05	315.94	1162.68	258.96	61.36	581.84	672.67	490.18	376.84	473.87	318.47	326.86	82.40	315.81
27	E2c_E4a	NovelJunction	0	11.15	19.49	3.09	0.00	0.00	3.84	0.00	4.83	0.00	2.00	0.00	1.81	1.53	6.12	0.00	0.00	2.50	13.87	0.00	0.00	8.94	0.00	4.63	0.00	12.24	0.00	0.00	4.45	2.94
28	I2	Intron	0	60.94	51.95	14.35	0.41	3.61	16.26	3.09	4.19	5.00	15.84	2.57	3.92	2.54	25.04	4.23	19.34	5.69	78.33	16.35	5.15	16.14	4.00	2.16	13.94	14.87	10.01	4.48	2.22	5.75
29	I2_AR1	ActiveIntronRegion	0	68.83	56.03	17.01	0.50	4.39	17.79	3.35	4.46	5.62	17.08	3.05	4.60	2.78	28.28	3.88	19.48	6.92	86.43	17.69	5.75	17.76	4.12	2.50	14.29	17.20	11.53	5.32	2.37	6.86
30	I2_AR2	ActiveIntronRegion	0	24.91	33.60	2.16	0.00	0.00	9.32	1.95	2.97	2.18	10.25	0.38	0.80	1.46	10.22	5.96	18.90	0.00	41.56	10.31	2.42	8.75	3.49	0.58	12.50	4.15	3.03	0.59	1.58	0.64
31	E3_Aa	NovelBoundary	0	72.85	23.07	12.36	0.00	0.00	7.40	0.00	7.12	3.84	20.41	1.58	4.40	5.57	28.43	0.00	17.21	10.15	64.73	24.28	7.77	19.13	6.42	9.26	15.49	11.82	7.81	10.44	0.00	7.03
32	ER3a	ExonRegion	0	894.94	1093.93	1151.58	21.58	62.67	516.07	189.46	446.95	354.53	712.86	649.84	368.75	785.75	1225.22	29.72	399.98	363.31	1369.84	296.84	95.11	648.19	741.16	541.56	373.35	529.71	415.78	433.76	122.20	389.56
33	E3_Da	KnownBoundary	0	89.66	16.38	22.22	0.00	0.00	22.75	4.69	11.50	2.77	27.36	4.24	6.84	8.28	33.68	0.00	37.25	5.20	64.73	8.09	0.00	24.71	4.47	6.75	10.23	15.99	8.97	2.29	0.00	10.00
34	E3a_E4a	KnownJunction	0	798.72	1174.55	1422.54	56.51	35.81	526.06	157.46	409.57	363.94	752.26	623.42	367.40	817.25	1073.75	45.44	413.71	350.94	1400.15	250.87	62.19	627.49	698.10	538.55	441.56	471.52	408.33	597.56	113.36	412.77
35	ER3b	ExonRegion	0	48.94	56.26	22.35	0.00	0.00	15.01	8.13	6.24	6.56	22.86	13.19	3.37	8.18	26.60	4.95	21.47	4.05	48.84	16.34	4.47	21.92	4.12	5.42	11.00	13.26	12.87	1.72	3.69	7.30
36	E3_Db	NovelBoundary	0	41.94	90.26	25.16	18.12	6.63	21.98	2.92	12.59	14.16	27.56	5.63	11.02	9.20	49.19	0.00	36.26	12.67	102.49	8.09	0.00	26.67	8.85	4.97	8.31	20.12	13.73	20.82	0.00	10.60
37	I3	Intron	0	50.21	74.27	17.61	0.35	3.07	30.41	7.89	8.27	11.88	26.85	8.16	8.61	6.44	37.28	4.97	22.69	8.36	59.17	26.23	7.47	22.80	6.88	4.10	17.35	26.09	10.17	7.96	3.54	8.36
38	I3_AR1	ActiveIntronRegion	0	56.48	80.52	24.80	0.00	4.36	28.94	10.45	11.88	12.85	31.56	9.42	9.95	7.83	44.03	3.94	23.58	9.22	62.30	27.23	8.92	24.03	9.89	4.56	18.93	29.97	13.57	9.77	4.41	9.43
39	I3_AR2	ActiveIntronRegion	0	53.76	100.74	17.88	4.20	3.21	32.60	8.97	4.44	16.25	29.49	10.16	13.02	6.79	39.19	5.41	33.36	14.59	54.77	34.07	8.14	26.94	3.85	3.49	16.71	26.22	9.85	5.87	5.83	9.89
40	I3_SR1	SilentIntronRegion	0	37.06	69.07	4.75	0.00	0.99	30.93	4.21	2.77	10.24	19.60	6.94	6.52	3.48	27.94	8.36	19.55	5.47	58.15	25.25	5.96	20.38	1.68	2.93	17.26	22.43	4.85	6.13	1.30	8.13
41	I3_AR3	ActiveIntronRegion	0	41.87	23.97	4.54	0.00	0.00	37.29	0.00	3.00	6.10	13.32	1.29	1.34	4.93	16.68	2.50	15.78	4.85	46.66	15.60	1.50	17.77	3.91	4.89	8.17	10.86	2.56	2.98	1.77	0.73
42	E4_Aa	NovelBoundary	0	132.48	64.38	29.05	0.00	0.00	37.60	5.49	4.48	23.45	51.81	2.97	10.09	12.58	49.96	26.71	27.92	6.17	93.63	32.37	0.00	19.53	4.81	9.21	36.19	25.35	13.00	0.00	0.00	9.34
43	ER4a	ExonRegion	0	755.43	1034.94	1844.44	33.95	80.49	612.38	204.16	403.11	342.52	795.17	585.12	365.82	874.62	1047.76	50.25	428.84	393.77	1424.29	292.57	75.08	743.13	653.20	507.76	349.14	471.26	431.19	459.05	133.90	474.90
44	E4_Da	KnownBoundary	0	1168.15	1579.23	2363.30	83.04	207.35	894.23	297.06	710.56	562.52	1164.37	780.58	438.82	1624.73	1362.76	60.99	721.15	496.53	1393.08	322.57	87.74	1155.06	1126.46	772.33	537.86	695.38	644.27	664.26	236.83	954.49
45	ER4b	ExonRegion	0	349.22	1069.54	1023.61	23.96	64.54	414.30	139.69	270.16	443.27	638.94	431.38	225.20	710.39	568.68	74.38	273.25	221.63	863.40	270.97	56.24	555.59	369.90	315.54	362.73	387.86	345.77	488.57	91.96	425.44