Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	KLF11	Gene	0	15.32	52.16	31.12	14.02	64.52	40.74	18.30	9.86	19.07	54.49	68.06	25.77	56.63	27.19	7.72	22.34	21.35	28.10	13.49	8.51	34.52	14.02	26.48	129.97	30.31	28.68	34.32	5.31	22.83
2	401510	Transcript	0	0.74	0.37	0.57	1.64	2.23	1.26	0.92	0.21	0.71	0.17	0.02	0.16	0.59	1.33	0.00	0.85	0.51	0.50	1.10	0.00	0.16	0.41	0.21	2.95	2.75	1.26	0.00	0.00	0.54
3	305883	Transcript	0	11.49	39.86	28.11	8.51	44.05	22.93	11.70	9.27	11.15	38.27	43.03	17.26	37.60	21.50	3.00	18.88	16.28	22.48	9.01	6.05	22.02	11.76	22.21	85.73	21.72	25.90	18.68	4.59	16.65
4	448523	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	440320	Transcript	0	0.00	0.00	1.09	0.00	0.00	0.25	0.21	0.00	0.00	1.16	0.77	0.11	0.50	0.12	0.00	0.00	0.14	0.62	0.59	0.00	0.00	0.00	0.00	0.20	0.13	2.61	0.00	0.00	0.00
6	IG43_AR3	ActiveIntergenicRegion	0	9.06	13.41	11.98	2.64	37.70	8.72	27.97	3.38	9.12	13.27	10.61	3.35	14.28	8.03	1.27	9.61	12.89	8.23	4.40	5.06	8.91	6.63	6.81	27.08	6.83	10.69	4.88	1.65	8.43
7	IG43_SR4	SilentIntergenicRegion	0	1.32	0.99	1.54	0.00	2.51	1.41	1.82	0.14	0.29	2.34	0.49	0.80	1.08	1.02	1.51	0.95	1.28	1.20	0.33	0.27	0.73	0.94	0.56	4.10	0.88	0.49	0.56	0.00	0.34
8	IG43_AR5	ActiveIntergenicRegion	0	0.53	1.59	1.24	1.77	0.00	2.72	2.60	1.02	1.11	1.51	2.36	0.22	3.82	1.68	1.36	4.57	2.45	0.45	0.79	0.72	0.35	0.42	1.79	5.56	2.12	3.10	0.45	0.00	3.64
9	ER1a	ExonRegion	0	1.47	0.74	1.15	3.28	4.47	2.52	1.84	0.42	1.41	0.33	0.03	0.31	1.18	1.80	0.00	1.70	1.02	0.99	2.19	0.00	0.33	0.82	0.41	5.90	1.64	2.52	0.00	0.00	1.07
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	10.78	0.00	0.00	2.86	0.00	0.00	0.00	0.00	0.00	0.00	1.11	0.00	3.75	1.24	0.00	8.09	0.00	0.00	0.00	0.00	8.61	0.00	0.00	0.00	0.00	0.00
11	E1a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.86	0.00	0.00	0.00	0.00
12	I1_AR1	ActiveIntronRegion	0	1.19	0.54	0.00	1.83	36.60	0.00	4.47	0.00	0.92	0.80	2.64	0.00	2.00	0.00	0.00	0.00	0.00	1.96	0.00	0.82	0.00	0.00	1.00	2.27	1.55	0.68	1.02	0.00	0.00
13	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	6.93	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	ER2a	ExonRegion	0	2.14	2.08	1.45	1.79	9.35	1.17	0.50	0.47	0.46	3.66	3.44	1.09	3.09	1.66	0.03	3.25	1.54	2.46	0.00	1.68	2.02	1.77	2.40	4.41	1.41	6.75	0.45	0.81	2.22
15	E2a_E5a	KnownJunction	0	0.00	17.45	7.80	0.00	7.07	7.33	0.00	6.72	2.86	11.10	7.66	2.74	18.28	11.92	0.00	11.02	10.04	9.12	0.00	4.13	11.27	6.51	7.34	16.99	8.56	17.68	5.07	4.58	4.99
16	ER3a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	E3a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
18	ER4a	ExonRegion	0	0.00	0.00	0.83	0.00	0.00	0.51	0.43	0.00	0.00	0.59	1.53	0.23	0.99	0.24	0.00	0.00	0.27	1.23	1.18	0.00	0.00	0.00	0.00	0.40	0.26	0.85	0.00	0.00	0.00
19	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	4.68	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	E4a_E5a	KnownJunction	0	0.00	0.00	1.35	0.00	0.00	0.00	0.00	0.00	0.00	1.72	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.38	0.00	0.00	0.00
21	E5_Aa	NovelBoundary	0	0.00	8.34	1.52	0.00	0.00	1.92	0.00	0.00	1.49	0.00	0.00	0.00	0.00	0.89	0.00	3.21	0.99	0.00	0.00	0.00	1.89	0.00	0.00	2.87	0.00	3.95	0.00	0.00	0.00
22	ER5a	ExonRegion	0	15.63	50.25	32.42	20.04	20.09	26.37	9.71	11.26	4.32	43.06	47.62	23.81	46.98	39.27	1.72	26.21	19.80	36.80	9.05	6.83	22.32	18.55	30.44	71.32	27.78	30.08	7.64	4.93	16.76
23	E5a_E6a	KnownJunction	0	25.66	64.18	29.47	8.84	86.06	34.65	18.54	11.65	5.24	80.41	77.03	31.57	80.02	39.24	0.00	41.39	29.53	27.74	0.00	11.25	24.03	25.72	47.08	101.03	44.36	66.43	6.91	7.50	17.20
24	E6_Aa	NovelBoundary	0	0.00	4.85	1.10	0.00	0.00	0.00	0.00	0.00	0.00	4.07	0.00	1.23	0.00	0.91	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	0.00	3.78	0.00	0.00	0.00
25	ER6a	ExonRegion	0	23.15	51.44	52.62	10.69	37.88	43.81	15.08	12.45	3.92	74.11	70.04	27.13	65.81	36.69	4.86	26.81	27.23	38.03	14.47	11.80	28.35	22.50	39.41	98.87	32.56	50.44	9.71	6.74	24.45
26	E6_Da	KnownBoundary	0	11.68	17.26	42.68	10.78	13.41	35.07	15.45	19.31	2.89	41.70	31.25	14.25	29.17	28.16	0.00	24.94	19.63	4.62	16.18	21.75	24.99	26.69	17.83	64.18	19.44	57.42	4.62	9.71	11.09
27	E6_Db	KnownBoundary	0	19.23	23.37	41.68	10.78	52.91	10.70	0.00	4.73	1.55	45.26	26.00	18.55	49.84	17.99	0.00	48.27	9.99	18.49	0.00	3.47	15.20	9.67	49.45	55.81	23.15	16.48	0.00	6.43	15.55
28	ER6b	ExonRegion	0	17.29	35.26	63.81	14.63	40.52	31.71	10.62	19.52	3.52	62.27	37.13	22.68	54.04	33.92	0.00	50.11	22.64	27.84	14.78	11.06	23.01	21.39	47.74	77.58	23.73	45.37	4.27	6.85	18.25
29	ER6c	ExonRegion	0	21.85	39.39	69.53	15.09	55.85	36.76	14.94	9.73	4.02	69.94	63.86	32.62	54.64	37.73	1.28	32.64	21.89	38.83	10.50	5.57	33.54	22.28	34.21	94.77	26.58	58.02	12.33	6.39	17.71
30	E6_Dc	KnownBoundary	0	19.94	42.76	73.80	0.00	77.08	46.92	8.30	17.12	4.78	75.06	77.19	47.95	49.65	42.03	8.17	25.17	24.47	46.23	0.00	0.00	47.57	31.70	32.36	95.05	30.19	77.89	19.78	13.21	14.13
31	ER6d	ExonRegion	0	24.32	54.09	61.70	15.90	68.79	42.20	17.55	19.89	9.90	75.71	62.79	30.07	64.07	37.72	2.50	27.71	32.64	43.00	10.31	9.96	38.00	23.30	42.48	118.45	39.32	50.81	17.96	10.16	28.56
32	E6_Dd	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
33	E6d_E7a	KnownJunction	0	14.57	58.17	40.86	8.20	47.75	10.47	15.62	9.65	12.67	36.99	49.89	20.54	31.11	26.39	0.00	26.62	13.03	27.74	16.18	3.89	13.72	13.03	30.58	109.46	22.54	26.44	16.25	2.02	19.02
34	I6_AR1	ActiveIntronRegion	0	0.46	0.00	0.00	0.00	1.04	0.59	0.43	0.00	0.95	0.00	0.00	0.00	0.00	0.48	0.00	0.00	0.32	0.41	0.68	0.00	0.30	0.00	0.39	2.75	0.61	1.01	0.00	0.00	0.29
35	E7_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	7.22	0.00	0.00	0.00	0.00	1.56	1.61	0.00	0.00	0.00	0.00	0.00	1.13	0.00	0.00	0.00	0.00	0.00	2.51	3.05	0.00	0.00	0.00	0.00	0.00
36	ER7a	ExonRegion	0	16.39	67.51	28.74	16.65	87.28	53.47	24.82	9.62	29.86	63.91	91.36	31.86	71.42	29.83	12.46	25.82	24.14	30.08	18.53	10.62	45.09	14.17	28.23	179.33	36.78	27.81	53.65	5.39	28.46
37	IG44	Intergenic	0	0.00	0.29	0.15	0.00	0.00	0.18	0.00	0.00	0.25	0.64	0.05	0.00	0.00	0.34	0.00	0.74	0.13	2.34	0.28	0.00	5.78	0.24	0.40	1.82	0.57	0.35	3.18	0.15	1.01
38	IG44_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.64	0.00	0.00	5.71	0.00	0.00	3.04	2.17	0.00	16.67	0.00	1.06
39	IG44_SR1	SilentIntergenicRegion	0	0.00	2.45	0.00	0.00	0.00	0.23	0.00	0.00	0.43	0.55	0.45	0.00	0.00	0.86	0.00	1.62	0.00	0.90	0.00	0.00	6.37	0.00	0.00	3.44	1.16	0.00	11.73	0.00	1.80
40	IG44_SR2	SilentIntergenicRegion	0	0.00	0.00	0.17	0.00	0.00	0.14	0.00	0.00	0.23	0.68	0.00	0.00	0.00	0.28	0.00	0.65	0.16	2.54	0.33	0.00	5.72	0.28	0.47	1.57	0.45	0.41	1.62	0.17	0.91