Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	LAPTM4A	Gene	0	645.24	870.14	312.33	702.16	935.01	729.43	625.85	448.88	592.67	749.52	670.70	358.24	517.82	665.36	621.38	562.10	711.17	515.23	539.95	990.16	562.05	613.07	522.20	1397.75	862.94	488.14	846.83	239.15	650.18
2	175091	Transcript	0	1158.29	1227.36	616.87	1281.50	1917.58	1340.61	1100.69	759.22	953.94	1250.18	1156.53	600.55	831.18	1171.67	758.34	812.78	1226.21	856.91	741.65	1674.10	1045.80	1017.28	857.10	2398.77	1637.49	806.00	1317.19	423.57	1074.27
3	483117	Transcript	0	19.73	13.75	5.43	9.00	11.93	23.78	17.02	11.38	15.35	14.73	16.81	8.24	10.41	15.61	14.00	13.72	17.27	10.72	14.10	14.12	19.03	11.67	9.11	40.07	22.32	13.26	26.50	7.26	15.25
4	IG31_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	5.75	0.00	0.00	0.00	2.59	0.00	0.00	0.00	0.00	0.00	5.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	ER1a	ExonRegion	0	264.33	176.12	148.17	316.20	448.63	168.93	213.22	231.07	147.98	180.36	115.99	134.09	172.86	220.49	116.25	216.74	291.37	238.85	107.88	338.18	160.77	305.23	206.90	255.92	241.02	327.83	163.28	142.85	233.52
6	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.99	0.00	0.00	0.00	0.00	0.00	0.00	1.01	0.00	0.00	0.00	4.09	0.00	0.00	0.00	1.70	4.12	0.00	0.00	3.73
7	E1a_E2a	KnownJunction	0	1169.80	1116.00	75.84	258.18	330.26	950.17	1075.92	780.43	814.24	1253.89	733.45	565.65	803.82	1172.22	705.59	1231.09	1237.45	1309.47	646.95	1872.47	870.27	1191.76	896.30	1720.83	1555.83	935.61	506.67	404.38	1132.66
8	E2_Aa	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.56	0.00	1.57	0.00	0.00	9.97	0.00	1.08	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	ER2a	ExonRegion	0	1025.61	982.92	434.50	666.42	1054.07	880.69	1081.66	865.58	790.65	1283.24	1054.88	762.18	929.80	1228.15	749.79	846.02	1472.26	879.04	688.75	1518.09	730.91	932.03	1139.89	1872.51	1639.36	1620.62	1397.58	767.06	1238.28
10	E2_Da	NovelBoundary	0	5.78	0.00	0.00	0.00	0.00	5.52	0.00	0.00	4.39	0.00	0.00	0.00	0.00	1.82	0.00	0.00	1.40	0.00	8.09	8.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.39
11	E2a_E3a	KnownJunction	0	1095.95	1204.51	1008.73	1829.72	2913.53	797.85	694.53	680.80	759.12	1110.49	1126.41	648.27	608.93	1345.39	683.87	583.76	1279.49	863.95	663.13	1878.18	671.69	1071.62	882.51	2548.26	1504.80	578.44	1805.86	477.76	831.18
12	I2_SR2	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.28	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	I2_SR5	SilentIntronRegion	0	1.26	5.14	2.09	0.00	0.00	0.81	1.18	0.00	2.47	0.00	0.00	2.74	0.00	0.47	0.00	0.00	0.31	2.26	4.16	4.85	0.84	0.00	0.00	0.00	0.26	0.92	0.00	0.00	0.00
14	E3_Aa	NovelBoundary	0	3.01	4.27	1.49	0.00	7.37	0.00	0.00	0.00	6.70	1.92	3.99	0.00	0.00	2.99	0.00	0.00	4.59	0.00	8.09	0.00	3.93	0.00	0.00	0.00	1.44	0.00	0.00	1.84	0.00
15	ER3a	ExonRegion	0	1239.85	1376.50	1103.16	2310.80	3281.35	1333.08	996.12	724.64	873.12	1248.99	1161.58	602.72	679.79	1403.04	650.33	733.19	1133.90	808.05	752.93	1909.25	994.15	1024.52	804.89	2864.29	1787.83	503.88	1188.07	279.08	807.06
16	E3_Da	NovelBoundary	0	4.90	0.00	0.00	0.00	0.00	3.72	0.00	0.00	0.00	0.00	0.00	2.44	0.00	5.25	0.00	0.00	0.90	0.00	16.18	0.00	0.00	0.00	2.31	0.00	0.00	0.00	0.00	0.00	0.00
17	E3a_E4a	KnownJunction	0	1399.43	1363.22	1044.46	2764.09	4056.69	1689.02	1194.13	904.94	1066.51	1415.63	1221.63	579.09	778.21	1450.75	880.99	961.97	1122.31	949.74	784.97	2043.74	1193.77	1105.22	771.59	2952.91	1764.88	609.77	1045.24	271.66	891.13
18	I3	Intron	0	1.10	3.32	0.00	0.00	0.00	0.71	0.00	0.00	0.58	0.74	0.00	0.00	0.00	0.70	0.00	1.28	0.77	0.99	8.23	0.00	2.20	1.86	0.00	0.00	2.21	0.00	0.00	3.36	0.00
19	I3_SR1	SilentIntronRegion	0	1.13	3.32	0.00	0.00	0.00	0.72	0.00	0.00	0.59	0.76	0.00	0.00	0.00	0.71	0.00	1.30	0.78	1.01	8.40	0.00	2.25	1.90	0.00	0.00	2.25	0.00	0.00	3.38	0.00
20	E4_Aa	NovelBoundary	0	3.01	4.27	0.00	0.00	0.00	0.00	0.00	0.00	1.34	0.00	1.30	0.00	0.00	2.28	0.00	3.37	5.20	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.55
21	ER4a	ExonRegion	0	1380.75	1558.89	930.67	1859.02	2616.65	1717.67	1424.77	830.85	1054.54	1685.02	1838.48	784.08	1140.33	1456.16	836.18	946.66	1707.70	949.99	990.13	2043.11	1328.48	1145.93	1115.01	3193.53	2229.27	823.28	2006.63	516.78	1489.82
22	E4_Da	NovelBoundary	0	9.02	0.00	0.00	0.00	0.00	6.91	0.00	0.00	0.00	3.87	2.91	0.00	2.48	7.31	0.00	7.65	3.15	4.62	32.37	0.00	1.64	0.00	2.36	5.20	1.82	0.00	0.00	7.73	4.32
23	E4a_E5b	KnownJunction	0	2409.91	2093.06	666.35	1068.54	1944.57	3763.36	2646.36	1563.69	2300.72	2288.40	2489.10	1058.14	1929.74	1689.22	1097.85	1157.50	2328.02	1200.69	1318.85	2435.49	2898.18	2006.34	1483.50	4706.64	3319.12	1637.09	2794.99	836.44	2649.17
24	I4	Intron	0	3.23	3.48	1.21	1.12	1.78	5.89	1.73	0.53	1.37	3.15	2.97	1.75	0.55	5.08	4.78	7.91	5.74	5.03	8.13	2.97	4.41	0.19	0.42	6.87	3.41	1.43	0.86	2.16	1.08
25	I4_AR1	ActiveIntronRegion	0	2.25	3.37	1.20	0.00	3.80	4.42	1.57	0.57	0.76	2.88	3.09	3.09	0.10	5.78	4.96	6.98	6.19	3.93	7.98	3.71	5.48	0.00	0.57	4.53	2.38	1.23	1.14	2.14	1.28
26	I4_SR1	SilentIntronRegion	0	2.70	2.21	1.49	3.62	3.01	1.85	0.00	0.00	1.50	1.69	3.04	2.39	1.35	5.16	10.09	7.49	8.45	3.67	7.62	2.81	2.56	0.00	1.77	2.09	4.05	2.49	0.00	5.26	0.47
27	I4_AR2	ActiveIntronRegion	0	3.81	3.65	1.20	1.52	0.57	7.04	1.96	0.55	1.70	3.42	2.90	0.97	0.74	4.70	4.24	8.46	5.27	5.75	8.27	2.59	3.98	0.31	0.23	8.56	3.93	1.45	0.78	1.91	1.02
28	E5_Aa	NovelBoundary	0	7.67	4.56	1.00	0.00	0.00	1.96	0.00	0.00	0.00	7.43	3.23	6.02	0.00	7.33	16.74	9.94	3.29	0.00	8.09	0.00	1.76	0.00	0.00	8.97	0.00	0.00	0.00	0.00	0.00
29	ER5a	ExonRegion	0	19.73	13.75	5.43	9.00	11.93	23.78	17.02	11.38	15.35	14.73	16.81	8.24	10.41	15.61	14.00	13.72	17.27	10.72	14.10	14.12	19.03	11.67	9.11	40.07	22.32	13.26	26.50	7.26	15.25
30	E5_Ab	KnownBoundary	0	8.43	0.00	2.49	9.49	6.04	1.34	0.00	1.89	10.48	7.19	1.46	6.72	0.00	10.26	8.37	22.03	13.75	9.25	8.09	3.89	19.49	0.00	2.17	19.68	6.97	10.60	10.09	4.31	0.00
31	ER5b	ExonRegion	0	1881.32	1710.19	500.39	970.43	1278.53	2113.35	1650.18	1266.00	1328.57	1955.86	2011.78	934.17	1331.46	1653.89	984.00	1222.98	1823.84	1118.38	1174.86	2226.70	1562.22	1712.53	1277.58	3656.27	2437.61	1239.92	2135.43	567.65	2006.73
32	E5_Da	NovelBoundary	0	6.02	8.05	1.22	0.00	0.00	3.38	4.81	2.14	2.98	1.88	1.30	2.59	1.43	8.38	7.57	11.32	7.65	5.39	0.00	0.00	7.30	0.00	0.00	15.55	0.00	3.86	0.00	6.47	0.00
33	E5a_E6a	KnownJunction	0	1435.59	1676.08	294.67	1655.65	1797.49	1602.12	1029.81	985.66	860.13	1361.31	1462.12	683.18	953.87	1214.56	809.64	953.10	1448.47	1025.13	1164.64	2196.49	1259.59	1384.48	950.96	3478.57	1869.14	711.65	1830.36	377.60	1236.95
34	I5	Intron	0	7.34	5.63	2.32	4.65	5.88	6.11	3.36	2.22	3.37	5.08	4.19	3.25	1.32	8.61	7.83	6.99	5.66	3.98	8.28	2.55	4.88	1.17	0.84	12.34	4.63	1.75	0.34	1.66	2.78
35	I5_AR1	ActiveIntronRegion	0	1.43	3.62	1.90	4.24	2.89	4.16	0.00	0.00	1.34	2.03	7.14	2.29	2.94	4.63	6.33	4.80	3.88	2.85	2.82	5.87	10.29	0.00	0.00	4.93	7.08	0.05	0.00	2.41	2.57
36	I5_SR1	SilentIntronRegion	0	8.40	6.12	2.46	4.86	6.33	6.51	3.94	2.62	3.74	5.63	3.87	3.50	1.12	9.46	8.23	7.55	6.12	4.16	9.14	2.15	4.23	1.38	0.99	13.83	4.30	2.06	0.40	1.58	2.91
37	E6_Aa	NovelBoundary	0	7.31	18.03	0.00	10.78	0.00	3.91	0.00	11.35	1.37	14.82	1.61	3.01	0.00	13.91	0.00	0.00	5.58	0.00	8.09	0.00	0.00	9.38	0.00	26.20	3.86	0.00	0.00	0.00	0.00
38	I5_AR2	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	9.96	4.12	2.02	0.00	2.25	3.85	1.19	0.00	0.00	1.81	5.60	0.00	0.00	5.46	9.05	0.00	1.43	0.00	0.00	2.51	5.72	0.00	0.00	2.17	0.00
39	I5_SR2	SilentIntronRegion	0	2.14	0.00	0.00	0.00	4.98	3.21	0.67	0.00	2.06	1.44	0.60	0.00	0.00	1.06	0.93	0.00	0.00	4.09	7.54	0.00	0.00	0.00	0.00	0.36	3.57	0.00	0.00	0.00	0.00
40	ER6a	ExonRegion	0	1747.26	1726.97	669.14	1634.64	1773.78	1465.72	1278.37	1215.34	1177.13	1361.93	1293.02	693.49	1280.79	1359.36	1006.75	994.17	1753.83	887.56	929.49	1827.62	1090.26	1855.18	1069.14	3328.76	1767.54	965.30	1832.14	416.24	1680.37
41	E6_Da	NovelBoundary	0	7.20	0.00	1.25	0.00	0.00	3.76	2.92	0.00	3.11	7.23	0.00	2.95	4.39	7.38	0.00	10.33	3.04	0.00	0.00	7.19	0.00	2.48	1.87	8.85	0.00	0.00	0.00	0.00	1.68
42	E6a_E7a	KnownJunction	0	1097.01	1399.29	848.55	1010.09	1144.49	930.57	893.35	762.36	1005.94	1127.82	1108.89	692.37	973.20	1189.08	832.56	835.14	1697.56	675.80	824.98	1488.01	778.42	938.36	858.42	1954.71	1275.52	643.33	1541.91	301.13	1552.69
43	I6	Intron	0	7.60	4.97	2.92	2.58	2.51	3.68	4.15	4.35	1.76	2.82	2.94	1.84	1.13	6.46	7.05	5.91	5.91	3.98	6.24	5.29	2.71	1.39	0.19	8.96	3.45	1.29	2.07	2.43	0.83
44	I6_SR1	SilentIntronRegion	0	9.60	4.65	3.79	3.05	2.88	3.84	5.61	5.55	1.60	2.89	3.64	2.45	1.29	7.33	8.73	7.61	6.64	3.86	7.31	5.39	3.04	1.63	0.27	10.23	3.56	1.62	2.97	3.23	1.08
45	I6_AR1	ActiveIntronRegion	0	2.14	9.85	3.37	7.31	0.00	0.00	2.02	0.79	3.37	2.89	3.91	0.00	0.00	5.57	0.00	2.53	10.02	6.63	9.70	2.01	0.00	1.80	0.00	7.68	6.33	0.00	0.00	0.93	0.00
46	I6_SR2	SilentIntronRegion	0	3.07	5.71	0.86	1.38	1.74	3.43	0.73	1.64	2.14	2.70	1.26	0.44	0.81	4.52	3.29	2.00	4.16	4.28	3.69	5.22	2.03	0.82	0.00	6.10	3.20	0.56	0.00	0.58	0.24
47	E7_Aa	NovelBoundary	0	3.01	13.19	0.00	0.00	0.00	1.96	0.00	1.94	1.16	3.67	0.00	0.00	0.00	6.96	9.97	5.74	4.25	13.87	0.00	0.00	1.89	0.00	0.00	11.36	0.00	0.00	29.17	0.00	1.78
48	ER7a	ExonRegion	0	1076.35	1998.29	690.70	1700.69	2005.86	1327.25	1044.10	854.29	1076.68	1416.07	1096.38	717.32	1022.62	1145.81	1124.46	1226.56	1238.99	967.11	1264.17	1862.41	1021.10	1166.66	970.43	2454.52	1336.79	740.66	1434.12	381.87	1445.05
49	E7_Da	KnownBoundary	0	593.92	1746.85	471.56	928.12	1440.26	1030.28	673.76	580.12	934.77	1168.25	849.51	412.85	565.75	818.80	1364.54	1010.93	626.95	745.15	1060.11	1752.40	893.42	645.54	658.96	1870.55	998.09	447.64	1597.43	211.76	720.95
50	ER7b	ExonRegion	0	439.00	1175.05	139.98	460.51	612.51	764.72	579.52	251.00	778.56	785.59	667.21	270.77	437.15	579.64	1104.23	638.08	463.40	512.39	721.26	1028.42	563.96	372.85	413.28	1474.07	695.28	217.45	946.43	116.08	395.58