Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C22orf27	Gene	0	3.15	18.82	18.95	3.29	21.00	9.54	21.07	6.90	29.25	17.16	8.28	15.13	19.97	8.63	43.42	36.17	25.67	84.42	36.26	1.47	8.40	10.23	10.81	16.98	55.39	8.17	9.94	9.69	6.82
2	432624	Transcript	0	0.35	9.95	1.46	0.00	1.95	3.38	2.88	0.90	6.45	4.58	3.10	2.36	3.78	1.77	17.02	3.62	1.99	25.84	13.07	0.00	2.10	4.74	2.09	6.34	10.09	1.52	4.95	2.31	1.86
3	422995	Transcript	0	0.00	0.31	0.16	0.00	5.18	0.13	2.32	0.35	1.06	0.83	0.00	0.12	0.50	0.00	2.21	2.86	1.89	7.22	0.92	0.00	0.41	0.02	0.00	0.82	5.78	0.00	0.00	0.78	0.51
4	441558	Transcript	0	0.11	0.00	0.18	0.00	0.00	0.00	0.11	0.59	0.00	0.15	0.06	0.00	0.00	0.44	0.00	3.24	0.00	1.86	0.67	0.00	0.00	0.19	0.00	0.11	3.12	0.00	0.00	0.17	0.00
5	ER1a	ExonRegion	0	0.00	0.00	0.89	0.00	0.39	0.76	0.00	0.00	0.00	0.61	0.00	0.00	0.03	0.00	0.00	0.07	0.24	3.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	E1_Ab	KnownBoundary	0	0.00	0.00	1.49	0.00	0.00	1.96	2.92	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	13.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	ER1b	ExonRegion	1	0.00	4.30	13.25	0.00	47.76	0.99	17.15	0.00	1.43	8.27	0.58	2.81	10.08	0.75	19.17	39.27	21.00	71.46	20.37	0.00	0.70	7.33	0.89	2.11	37.73	0.00	1.80	0.00	0.00
8	E1_Ac	KnownBoundary	0	0.00	0.00	18.44	0.00	0.00	1.46	5.03	0.00	0.00	0.00	0.00	1.51	3.12	0.89	8.77	14.00	13.82	55.48	0.00	0.00	0.00	2.19	0.00	3.05	10.08	0.00	0.00	0.00	0.00
9	ER1c	ExonRegion	0	1.66	0.00	5.00	0.00	0.00	0.54	5.62	0.00	0.99	0.02	0.40	1.22	4.09	0.95	9.33	8.67	7.85	24.98	0.21	0.00	0.00	6.34	0.05	1.01	23.45	0.00	0.00	0.00	0.00
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.31	0.00
11	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.31	0.00	0.00	0.00	0.00	0.00	0.00	3.82	1.06	4.62	0.00	0.00	0.00	0.00	0.00	0.00	4.85	0.00	0.00	0.00	0.00
12	E1a_E3a	KnownJunction	0	0.00	0.00	1.54	0.00	0.00	1.80	7.50	0.00	0.00	0.00	1.61	3.13	6.15	1.24	16.74	0.00	4.95	18.49	0.00	0.00	0.00	13.32	0.00	3.05	13.98	0.00	0.00	0.00	0.00
13	E1a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
14	Ix	Intron	0	1.02	0.76	0.00	0.00	2.32	0.16	1.20	0.00	0.60	0.86	0.14	0.00	0.77	0.00	5.89	1.60	2.30	4.87	1.89	0.00	0.68	0.21	0.64	0.26	2.71	1.30	0.00	0.97	0.16
15	Ix_AR1	ActiveIntronRegion	0	0.94	1.42	0.00	0.00	2.15	0.00	1.33	0.00	0.25	0.32	0.26	0.00	0.00	0.00	4.63	1.64	3.61	6.07	2.11	0.00	0.31	0.00	0.80	0.00	2.83	0.00	0.00	0.00	0.00
16	Ix_SR1	SilentIntronRegion	0	1.12	0.00	0.00	0.00	2.54	0.36	1.05	0.00	1.02	1.50	0.00	0.00	1.68	0.00	7.40	1.58	0.78	3.51	1.66	0.00	1.11	0.47	0.47	0.56	2.60	2.86	0.00	2.12	0.35
17	E2_Aa	NovelBoundary	0	2.65	0.00	1.30	0.00	12.97	1.76	5.84	0.00	3.20	1.88	0.00	0.00	7.01	0.00	16.14	0.00	5.45	4.62	8.09	0.00	0.00	0.00	0.00	2.39	5.04	2.19	0.00	0.00	4.46
18	ER2a	ExonRegion	0	0.00	0.93	0.48	0.00	1.83	0.40	6.97	1.06	1.86	2.50	0.00	0.36	1.49	0.00	6.64	4.76	4.61	17.02	2.76	0.00	1.23	0.05	0.00	2.47	6.89	0.00	0.00	2.35	1.54
19	E2_Da	NovelBoundary	0	3.01	0.00	2.96	0.00	0.00	3.91	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	0.00	0.00	7.79	9.25	0.00	0.00	0.00	0.00	0.00	3.05	3.52	0.00	0.00	0.00	0.00
20	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	13.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.61	0.00	0.00	0.00	0.00
21	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	2.54	0.00	1.05	1.92	1.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.78	3.17	1.66	0.00	0.00	0.00	0.00	0.00	0.74	0.00	0.00	0.00	0.00
22	Ix_SR1	SilentIntronRegion	0	1.50	3.27	1.56	0.00	0.00	0.48	1.88	0.00	1.83	1.18	0.69	0.14	0.23	0.21	7.90	4.09	4.00	6.84	2.60	0.23	1.06	0.00	0.21	0.75	3.66	0.00	0.21	1.33	0.00
23	E3_Aa	NovelBoundary	0	2.95	0.00	3.09	0.00	0.00	1.76	0.00	0.00	2.68	0.00	1.36	1.42	0.00	0.00	26.31	6.58	8.40	18.49	8.09	0.00	3.73	0.00	0.00	0.00	5.53	1.67	0.00	2.20	0.00
24	ER3a	ExonRegion	0	4.44	25.52	26.59	4.82	27.53	13.40	28.88	9.64	41.45	23.62	11.61	21.70	28.08	12.20	59.57	48.69	35.62	113.25	49.27	2.15	11.78	14.23	15.43	23.50	75.83	11.71	13.61	13.48	9.53
25	E3_Da	KnownBoundary	0	0.00	3.88	2.52	0.00	6.63	1.69	4.35	1.94	10.26	3.36	2.37	0.00	1.24	1.97	0.00	3.06	1.78	19.26	0.00	0.00	0.00	5.74	2.27	4.55	9.36	6.48	3.98	2.11	1.25
26	ER3b	ExonRegion	0	1.05	29.85	1.96	0.00	5.46	7.59	1.14	2.71	19.34	13.12	7.69	3.94	5.15	4.06	34.30	10.78	0.79	55.16	39.21	0.00	6.30	0.88	6.28	15.97	16.30	4.56	14.86	6.94	5.58
27	E3_Db	NovelBoundary	1	13.15	25.89	77.06	45.51	13.41	22.41	5.21	11.35	116.94	29.64	64.82	49.31	37.32	48.32	85.11	22.18	34.66	18.49	24.28	32.67	27.40	19.40	38.12	34.39	32.09	70.04	112.71	46.86	39.22
28	Ix	Intron	0	3.60	2.48	0.98	0.00	0.00	0.81	0.17	1.70	1.70	0.73	0.40	1.34	0.54	0.38	5.41	1.46	4.52	2.16	2.68	0.69	0.96	0.45	0.30	3.07	1.80	1.32	0.46	1.37	0.34
29	Ix_AR1	ActiveIntronRegion	0	3.08	4.28	0.14	0.00	0.00	0.99	0.09	0.66	2.80	1.04	0.23	1.72	0.13	0.33	13.80	0.61	7.72	2.04	4.59	0.99	2.05	0.00	0.00	1.01	2.11	1.22	0.00	1.17	0.96
30	Ix_SR1	SilentIntronRegion	0	3.78	1.93	1.25	0.00	0.00	0.76	0.20	2.03	1.37	0.64	0.45	1.23	0.67	0.40	2.85	1.73	3.55	2.20	2.11	0.61	0.63	0.60	0.40	3.72	1.71	1.36	0.60	1.44	0.15
31	E4_Aa	NovelBoundary	0	2.42	0.00	0.00	0.00	0.00	4.64	4.46	1.89	5.06	1.72	0.00	2.59	0.00	1.64	6.98	0.00	0.00	0.00	0.00	0.00	3.53	9.67	4.28	2.45	4.77	5.66	4.22	1.66	0.00
32	ER4a	ExonRegion	0	0.00	0.00	0.72	0.00	0.00	0.00	0.00	1.58	0.00	0.62	0.00	0.00	0.00	1.55	0.00	8.06	0.00	6.61	2.66	0.00	0.00	0.77	0.00	0.00	10.23	0.00	0.00	0.00	0.00
33	E4_Da	NovelBoundary	1	38.28	83.77	15.82	47.88	40.23	65.19	32.67	49.07	54.24	64.79	66.08	46.38	50.19	63.35	48.43	60.66	32.75	64.34	64.07	55.24	97.19	53.72	64.81	44.02	53.08	72.52	140.49	52.88	43.51
34	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	Ix_SR1	SilentIntronRegion	0	0.00	0.54	0.98	0.00	0.80	0.00	0.00	0.30	0.14	0.12	0.10	0.10	0.21	0.22	0.00	3.27	0.68	3.98	0.52	0.00	0.23	0.00	0.00	0.35	2.65	0.13	0.00	0.40	0.03
36	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.87	0.00	1.09	0.00	3.44	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.32	0.00	0.00	0.00	0.00	0.00
37	ER5a	ExonRegion	0	0.46	0.00	0.00	0.00	0.00	0.00	0.43	0.79	0.00	0.00	0.25	0.00	0.00	0.19	0.00	1.06	0.00	0.82	0.00	0.00	0.00	0.00	0.00	0.46	0.30	0.00	0.00	0.70	0.00