Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C22orf39	Gene	0	52.68	49.37	57.54	137.99	35.25	53.20	103.29	99.06	78.25	57.13	57.95	66.20	65.80	80.72	86.52	72.55	91.27	73.68	95.53	89.27	36.95	62.45	57.45	59.84	57.55	68.62	35.47	84.85	37.54
2	333059	Transcript	0	1.82	0.20	1.74	2.90	1.24	0.48	0.87	0.85	0.08	0.33	0.07	0.29	0.24	3.06	0.41	1.82	0.98	2.75	1.33	1.44	1.04	1.26	3.18	1.03	2.12	1.57	0.02	1.99	0.48
3	399562	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	399568	Transcript	0	191.16	76.56	38.72	141.87	47.00	94.43	188.11	195.12	166.79	82.72	74.57	59.40	90.79	107.99	216.63	94.59	78.47	128.02	161.54	175.55	68.38	202.37	58.25	100.50	93.52	79.16	34.88	98.45	49.51
5	ER1a	ExonRegion	0	3.64	0.40	3.49	5.80	2.47	0.95	1.73	1.70	0.16	0.65	0.14	0.58	0.48	6.11	0.83	3.64	1.96	5.51	2.66	2.88	2.08	2.53	6.37	2.07	4.24	3.15	0.04	3.98	0.97
6	E1_Ab	KnownBoundary	0	17.87	4.46	31.59	167.38	96.38	11.89	58.36	26.57	6.55	18.89	1.27	15.48	7.23	8.49	32.49	19.12	15.91	41.48	16.18	20.34	3.49	38.31	36.49	11.42	9.05	39.44	5.91	29.79	7.36
7	ER1b	ExonRegion	1	4.29	3.28	6.73	176.97	77.71	14.02	60.47	26.14	2.25	8.66	3.33	2.47	2.60	8.53	23.52	43.53	1.00	56.22	35.30	21.92	2.85	14.42	37.25	8.60	4.29	12.26	3.66	11.74	2.68
8	E1_Da	NovelBoundary	0	0.00	0.00	1.22	0.00	0.00	0.00	0.00	0.00	1.55	0.00	0.00	0.00	0.00	4.36	0.00	3.67	1.26	0.00	0.00	0.00	0.00	4.33	0.00	0.00	1.78	0.00	0.00	4.58	0.00
9	E1a_E2a	KnownJunction	0	92.02	33.84	163.57	1290.92	306.09	56.59	419.96	118.54	33.68	44.78	11.58	28.49	62.16	39.46	283.63	242.58	68.61	147.82	97.11	129.59	39.67	121.88	141.25	8.31	23.56	90.55	23.31	178.65	18.32
10	E1a_E3a	NovelJunction	0	5.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.43	1.37	0.00	0.00	0.00	0.00	0.00	0.00	2.05	0.00	2.36	0.00	0.00	5.41	0.00	0.00	0.00
11	E1a_E4a	NovelJunction	0	5.19	0.00	0.00	0.00	0.00	0.00	2.69	0.00	3.38	0.00	0.00	0.00	0.00	0.00	0.00	3.82	0.00	0.00	8.09	0.00	0.00	1.90	0.00	0.00	0.00	5.71	0.00	0.00	0.00
12	ER1c	ExonRegion	1	25.64	13.26	48.50	543.57	155.35	25.71	197.02	59.94	13.11	19.25	3.79	5.77	15.49	14.68	131.51	120.44	11.58	127.97	83.31	69.43	15.69	54.68	74.67	6.61	9.90	41.68	12.55	64.24	5.27
13	E2_Aa	NovelBoundary	0	0.00	0.00	2.64	9.49	0.00	0.00	0.00	0.00	0.00	3.20	0.00	1.57	0.00	0.00	9.97	0.00	1.98	9.25	0.00	3.64	0.00	2.48	0.00	0.00	0.00	0.00	0.00	3.91	0.00
14	ER2a	ExonRegion	0	86.10	21.41	40.82	157.79	40.00	36.09	133.99	119.03	34.82	32.08	10.92	30.27	48.37	47.06	94.04	54.14	31.97	66.69	44.23	92.37	25.73	110.93	48.72	25.99	35.84	83.63	14.05	70.81	24.04
15	E2a_E3a	KnownJunction	0	57.22	16.19	14.92	58.02	0.00	35.57	38.73	105.85	21.35	33.19	14.52	41.99	67.80	72.27	98.86	69.08	49.52	111.73	16.18	140.09	47.17	95.10	34.57	27.46	38.64	45.79	16.60	41.88	21.85
16	E2a_E4a	KnownJunction	0	302.77	45.95	10.29	77.22	13.56	84.64	192.76	285.71	135.51	72.30	37.11	26.81	79.39	90.91	272.27	78.41	39.55	160.15	113.29	207.24	74.28	319.80	45.31	85.90	100.40	84.67	7.55	62.23	34.30
17	Ix	Intron	0	10.75	8.08	4.76	1.62	1.10	7.91	3.41	3.01	7.16	9.20	2.41	4.33	1.83	13.09	6.98	16.15	29.37	13.61	7.65	4.03	5.71	2.08	1.53	7.21	5.28	5.41	1.29	6.20	2.48
18	Ix_SR1	SilentIntronRegion	0	8.40	4.75	2.37	2.73	1.33	4.95	2.52	1.71	4.15	5.66	1.30	3.62	0.99	9.54	3.83	10.71	18.14	11.72	5.04	2.96	3.80	2.16	1.18	4.69	4.20	3.77	0.80	3.64	0.87
19	Ix_AR1	ActiveIntronRegion	0	13.30	11.67	7.34	0.42	0.86	11.11	4.37	4.42	10.40	13.02	3.62	5.09	2.73	16.95	10.38	22.03	41.52	15.66	10.48	5.20	7.77	2.01	1.91	9.95	6.44	7.18	1.83	8.97	4.23
20	E3_Aa	NovelBoundary	0	19.47	9.50	7.40	0.00	0.00	6.87	0.00	11.50	12.24	3.75	2.97	3.37	0.00	19.25	42.26	20.96	51.01	23.12	8.09	3.39	7.54	0.00	0.00	8.08	10.08	11.89	6.71	4.04	0.00
21	ER3a	ExonRegion	0	52.84	35.23	81.95	139.59	12.52	44.13	86.15	144.69	33.66	63.92	55.15	88.48	76.16	92.85	70.71	80.75	130.45	92.16	63.09	92.15	37.81	68.91	74.85	53.85	67.91	98.04	37.36	91.51	38.63
22	E3_Da	NovelBoundary	0	12.62	48.18	23.25	113.89	7.37	48.04	45.89	20.55	28.63	56.36	34.42	64.00	50.98	45.73	99.46	76.80	79.35	32.62	48.55	77.08	28.28	33.55	33.54	49.23	29.78	33.43	29.42	30.82	21.56
23	E3_Db	NovelBoundary	0	25.66	26.37	25.49	63.84	0.00	35.68	23.52	25.43	26.49	25.17	22.43	29.58	26.56	52.82	33.88	54.70	50.76	24.53	16.18	44.74	21.54	18.57	36.10	31.10	20.50	18.45	30.96	20.26	22.52
24	ER3b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
25	Ix	Intron	0	10.14	27.43	4.40	45.23	7.70	33.25	36.03	33.88	72.22	31.12	22.53	31.15	35.06	33.79	48.85	68.09	36.10	54.19	90.70	49.09	23.25	17.06	38.03	42.98	29.31	32.23	7.70	42.85	40.11
26	Ix_AR1	ActiveIntronRegion	0	10.16	27.68	4.44	45.70	7.73	33.56	36.41	34.23	72.92	31.40	22.74	31.46	35.41	34.13	49.24	68.75	36.47	54.75	91.60	49.60	23.49	17.20	38.41	43.36	29.61	32.55	7.78	43.26	40.49
27	E4_Aa	NovelBoundary	0	21.77	98.31	30.40	194.55	20.19	53.83	42.22	84.25	63.34	59.16	27.36	47.62	34.84	59.73	28.30	85.45	77.57	47.52	89.02	91.80	44.76	36.46	47.77	165.27	60.20	46.26	38.57	47.45	40.24
28	ER4a	ExonRegion	0	79.55	107.16	67.16	206.52	80.44	104.23	183.46	104.53	198.07	93.13	112.04	91.99	102.18	125.07	160.99	110.77	117.39	95.88	209.79	143.87	62.47	84.93	71.19	115.11	86.65	73.64	62.20	134.66	64.72