Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AC006547.4	Gene	0	17.86	9.12	8.56	5.76	2.45	11.04	3.24	8.32	11.42	7.83	2.15	5.94	3.96	15.62	24.83	9.75	26.97	12.31	4.81	8.90	6.01	9.96	2.72	18.57	10.04	10.89	4.60	8.35	6.52
2	415503	Transcript	0	10.08	4.92	4.58	3.26	1.36	6.00	1.74	4.46	6.31	4.26	1.16	3.14	2.08	8.58	13.59	5.39	14.81	6.84	2.74	4.72	3.27	5.43	1.43	9.98	5.41	5.85	2.43	4.63	3.49
3	IG40	Intergenic	0	7.09	5.67	5.50	1.91	0.65	5.52	1.72	7.25	7.94	5.71	2.24	5.21	2.98	8.36	13.79	5.27	17.54	5.55	2.86	7.32	2.85	6.51	3.27	12.19	6.58	11.18	1.57	3.81	4.23
4	IG40_SR1	SilentIntergenicRegion	0	6.86	5.43	5.40	1.99	0.68	5.28	1.61	7.30	7.87	5.67	2.20	5.03	2.96	8.11	13.53	5.18	17.26	5.37	2.69	7.15	2.76	6.15	2.98	11.77	6.40	10.78	1.58	3.70	4.20
5	IG40_AR1	ActiveIntergenicRegion	0	13.09	12.01	8.18	0.00	0.00	11.64	4.76	6.21	9.79	6.74	3.40	9.70	3.54	14.79	20.65	7.54	24.97	10.33	7.01	11.71	5.22	15.77	10.67	22.90	11.20	21.43	1.33	6.78	4.89
6	ER1a	ExonRegion	0	12.63	14.41	14.92	3.67	2.50	15.49	5.17	13.68	12.49	10.73	3.36	11.52	8.30	20.11	32.03	10.63	34.25	12.43	2.46	16.36	8.41	13.39	5.55	30.31	16.12	17.67	9.30	8.76	11.22
7	E1_Da	NovelBoundary	0	74.32	64.08	83.89	86.28	28.00	39.33	12.87	38.57	100.31	39.55	37.49	26.08	56.01	57.32	111.42	59.44	88.62	36.99	32.15	42.26	18.85	57.85	23.79	103.96	56.18	77.72	11.33	41.07	36.35
8	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	E2_Aa	NovelBoundary	0	109.54	114.01	188.68	249.12	18.57	61.85	31.75	94.65	142.03	55.24	40.14	107.83	137.19	129.02	123.38	71.60	239.61	46.23	48.55	118.18	45.93	194.76	44.82	145.17	87.86	85.83	21.62	63.49	102.51
10	ER2a	ExonRegion	0	0.27	0.17	0.21	0.00	0.00	0.06	0.06	0.00	0.02	0.02	0.02	0.01	0.00	0.83	0.25	0.00	0.98	0.08	0.00	0.00	0.03	0.04	0.01	0.10	0.07	0.07	0.34	0.14	0.20
11	E2_Da	NovelBoundary	0	316.93	470.11	206.87	237.91	49.07	199.09	92.12	311.09	268.68	220.98	213.41	195.66	219.82	292.62	400.83	202.80	372.60	162.72	218.50	295.81	128.87	452.34	102.88	512.86	399.80	355.16	99.05	230.27	127.93
12	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	Ix	Intron	0	14.95	2.44	4.34	1.55	0.00	4.24	3.05	2.49	7.34	4.76	1.48	2.67	1.86	9.13	15.06	5.75	20.99	7.99	3.11	5.84	2.55	0.88	0.98	8.49	3.71	6.88	1.68	4.50	1.34
14	Ix_SR2	SilentIntronRegion	0	3.40	0.00	2.24	0.00	0.00	1.46	1.48	3.74	6.25	3.57	0.07	0.00	3.48	3.20	6.92	4.61	5.21	5.70	0.00	3.14	1.43	0.00	1.81	3.42	0.21	4.11	2.80	0.00	1.34
15	Ix_AR1	ActiveIntronRegion	0	16.72	1.81	5.83	1.32	0.00	4.13	3.71	3.05	8.72	5.06	0.98	3.36	1.91	10.09	17.45	7.06	23.99	9.49	2.87	8.01	2.56	0.83	1.55	9.25	3.93	7.18	2.34	5.09	2.02
16	Ix_SR1	SilentIntronRegion	0	13.45	3.71	2.22	2.09	0.00	4.73	2.19	1.50	5.32	4.45	2.43	1.86	1.63	8.29	12.24	3.85	18.01	5.92	3.83	2.71	2.65	1.05	0.00	7.89	3.75	6.76	0.56	4.04	0.26
17	Ix	Intron	0	19.34	13.54	9.84	5.63	3.83	9.17	7.12	17.33	7.71	13.03	4.67	4.36	7.12	13.49	6.12	12.65	16.98	7.94	10.03	14.23	3.36	17.68	6.38	14.35	9.53	28.36	5.03	10.87	3.42
18	Ix_SR1	SilentIntronRegion	0	19.63	13.76	9.99	5.71	3.89	9.31	7.23	17.61	7.83	13.22	4.74	4.42	7.22	13.70	6.21	12.85	17.22	8.06	10.15	14.45	3.40	17.91	6.47	14.57	9.66	28.79	5.11	11.04	3.47
19	Ix	Intron	0	23.30	3.66	2.80	0.00	0.00	5.17	0.00	3.08	8.68	6.04	1.49	4.39	0.54	8.51	16.53	14.23	19.97	13.15	0.00	11.52	5.96	3.01	0.00	9.89	7.77	7.88	0.00	6.13	2.24
20	Ix_SR1	SilentIntronRegion	0	23.47	3.69	2.82	0.00	0.00	5.21	0.00	3.10	8.75	6.09	1.50	4.43	0.55	8.58	16.66	14.35	20.13	13.26	0.00	11.61	6.01	3.04	0.00	9.97	7.83	7.95	0.00	6.18	2.26
21	E3_Aa	NovelBoundary	0	46.95	0.00	6.38	18.77	0.00	16.38	11.10	9.95	15.23	10.99	3.23	7.74	3.34	16.15	55.81	48.42	47.76	33.13	24.28	17.86	11.23	9.29	2.17	21.65	31.29	16.01	0.00	19.59	1.68
22	ER3a	ExonRegion	0	37.49	10.01	7.77	12.61	4.29	14.47	3.50	8.63	19.05	10.56	2.43	4.16	2.08	21.96	35.66	16.32	38.82	21.68	11.24	7.27	7.92	13.73	1.59	19.47	10.84	11.52	2.53	14.24	6.06