Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	UBE2L3	Gene	0	360.67	311.96	453.58	435.98	424.84	522.52	492.09	407.47	587.20	338.77	374.74	291.86	635.21	345.29	244.71	292.31	302.88	223.40	308.13	236.30	367.46	526.65	386.14	386.86	447.93	696.59	468.10	512.26	400.61
2	458578	Transcript	0	0.14	0.24	0.25	0.35	0.24	0.71	0.83	0.21	0.46	0.15	0.44	0.20	0.30	0.11	0.15	0.39	0.07	0.26	0.00	0.03	0.48	1.47	0.36	2.96	0.34	0.77	0.74	0.74	0.38
3	342192	Transcript	0	1929.05	718.09	2996.88	3145.59	3673.57	2270.25	2934.11	2239.67	3725.56	1268.19	1143.35	1086.33	3289.17	882.09	375.08	1035.98	1627.95	120.95	195.50	714.35	1592.01	3014.65	1446.26	732.28	1477.44	3478.97	2447.94	2666.66	2472.39
4	496722	Transcript	1	5.82	6.87	6.16	0.03	1.51	6.05	3.63	0.27	3.34	4.64	4.96	1.09	7.38	3.18	5.06	5.53	2.94	6.27	26.77	15.91	7.14	8.78	6.60	6.76	6.83	13.69	43.16	18.20	4.03
5	418385	Transcript	0	0.00	0.00	0.14	0.00	0.00	0.17	1.01	0.69	0.56	0.00	0.15	0.00	0.16	0.57	0.00	0.00	0.13	0.68	0.57	0.35	1.25	1.80	0.23	0.00	0.71	0.00	1.83	0.20	0.00
6	ER1a	ExonRegion	0	0.28	0.47	0.49	0.69	0.47	1.43	1.65	0.42	0.92	0.30	0.88	0.40	0.61	0.21	0.31	0.78	0.14	0.53	0.00	0.06	0.97	0.84	0.72	1.02	0.68	1.55	1.48	1.48	0.75
7	E1_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	3.87	0.00	0.00	0.00	1.33	0.00	0.00	1.10	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	4.21	0.00	0.00	0.00
8	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.09	0.00	4.90	0.00	0.00	0.00	0.00	0.00
9	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER2a	ExonRegion	0	24.29	19.25	54.55	109.65	203.76	92.67	148.05	41.42	139.96	49.17	50.17	25.50	65.37	18.60	25.23	31.13	26.81	37.30	34.93	14.13	66.40	24.47	58.31	14.03	40.11	302.50	76.46	212.88	51.45
11	E2_Ab	KnownBoundary	0	90.42	71.65	387.25	583.02	1393.84	958.23	1674.85	347.71	1546.65	412.80	215.59	116.05	144.92	55.55	174.80	107.71	219.17	216.40	184.33	56.32	694.67	73.27	550.22	97.80	308.42	3495.40	341.82	2908.86	227.07
12	ER2b	ExonRegion	0	2382.18	1224.63	3232.58	5977.29	9015.02	4086.10	5709.88	2878.73	5422.71	2482.87	2383.47	1449.60	4298.31	1190.47	1066.71	1940.39	1756.70	1382.56	1308.19	1051.33	2851.27	3086.42	2739.03	956.32	2147.21	8735.39	4045.28	6041.28	3125.19
13	E2_Da	KnownBoundary	0	2.48	0.00	2.64	0.00	0.00	3.38	2.57	0.00	2.83	7.87	0.00	0.00	5.92	0.00	0.00	13.46	14.72	0.00	0.00	3.97	3.61	17.21	0.00	0.00	0.00	1.59	0.00	12.49	1.68
14	E2a_E3a	KnownJunction	0	3833.82	1416.93	5939.22	6181.52	7143.39	4447.84	5720.16	4437.92	7311.16	2487.21	2236.53	2147.16	6512.97	1745.59	724.93	2040.83	3229.09	204.59	356.07	1414.57	3117.62	6004.82	2834.22	1450.53	2914.77	6655.43	4819.41	5120.44	4893.33
15	E2a_E6a	NovelJunction	1	147.64	14.45	50.05	122.08	57.77	88.48	132.17	193.94	91.24	29.32	29.74	22.89	159.32	24.57	87.70	89.50	9.81	18.49	16.18	53.75	132.52	149.30	74.51	16.39	72.21	110.59	27.93	30.60	102.47
16	ER2c	ExonRegion	0	3.97	1.72	5.15	0.06	3.02	1.31	1.71	0.53	2.88	1.49	1.00	1.07	2.72	1.82	2.54	3.63	3.29	3.30	5.21	4.77	3.62	6.33	1.28	2.40	1.84	4.09	6.65	6.30	0.79
17	E2_Db	NovelBoundary	0	3.01	0.00	1.05	8.84	0.00	1.46	0.00	1.94	2.86	0.00	0.00	0.00	3.22	2.50	0.00	3.82	2.39	4.62	0.00	0.00	3.69	2.19	0.00	0.00	3.56	0.00	0.00	2.11	0.00
18	E2b_E3a	KnownJunction	1	7.67	12.02	7.18	0.00	0.00	10.78	5.55	0.00	3.81	7.79	8.92	1.11	12.04	4.54	7.57	7.42	2.59	9.25	48.33	27.04	10.67	11.23	11.92	11.13	11.82	23.30	79.67	30.10	7.26
19	Ix	Intron	0	1.56	1.55	0.73	0.46	0.36	1.60	0.87	0.80	4.67	2.36	0.83	1.33	1.15	1.37	3.72	1.16	5.24	1.46	2.12	0.97	2.09	0.78	0.53	1.78	1.01	1.34	0.51	1.88	0.92
20	Ix_SR1	SilentIntronRegion	0	3.11	0.00	1.23	0.00	0.90	3.03	1.85	1.69	6.35	2.12	0.54	1.88	0.58	2.66	3.67	4.20	3.10	3.49	2.18	0.51	4.06	2.43	1.18	0.39	1.31	1.73	0.34	2.09	0.00
21	Ix_AR1	ActiveIntronRegion	0	1.34	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.02	1.26	1.19	2.47	1.62	2.72	11.20	7.59	5.13	2.73	4.53	0.00	1.43	4.51	2.71	0.00	0.00	0.00	0.00	0.00	0.00
22	Ix_AR2	ActiveIntronRegion	0	5.84	3.04	1.94	0.92	0.63	3.10	2.52	3.66	6.85	3.55	1.59	3.05	2.81	3.62	6.25	4.84	13.21	1.25	2.89	2.38	3.38	3.48	1.14	4.56	4.55	1.38	0.00	2.31	0.66
23	Ix_SR2	SilentIntronRegion	0	1.54	1.75	0.88	0.66	0.41	1.99	0.96	0.86	5.83	2.78	0.94	1.51	1.42	1.51	4.52	1.20	6.39	1.80	2.64	1.32	2.41	0.76	0.64	2.19	1.05	1.77	0.74	2.41	1.27
24	Ix_AR3	ActiveIntronRegion	0	2.64	5.05	1.12	0.00	0.00	2.43	0.00	1.84	3.63	4.78	0.00	0.00	0.00	0.91	0.00	0.00	4.85	0.00	0.35	0.00	4.28	0.00	0.00	0.00	0.00	0.24	0.00	0.00	0.00
25	Ix_AR4	ActiveIntronRegion	0	2.14	8.00	1.02	0.00	0.00	2.63	0.00	1.28	2.39	1.82	0.88	0.05	0.00	0.91	0.00	0.00	3.40	2.73	4.53	0.00	4.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	Ix_AR5	ActiveIntronRegion	0	0.00	9.85	0.00	0.00	0.00	1.37	0.00	0.00	2.25	1.56	1.19	2.16	0.00	0.30	0.00	0.00	3.09	2.73	4.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	Ix_AR6	ActiveIntronRegion	0	0.00	3.28	0.00	0.00	0.00	0.14	0.00	0.00	3.93	2.45	1.19	2.47	0.00	0.00	0.00	0.00	4.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
28	Ix_AR7	ActiveIntronRegion	0	0.82	1.41	0.95	0.00	0.00	0.26	0.38	0.70	2.60	2.68	0.95	0.84	0.25	0.69	3.68	0.47	3.84	0.37	0.61	0.00	0.54	0.34	0.00	1.23	0.54	0.60	0.00	0.62	0.64
29	E3_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.50	2.23	0.00	0.00	1.96	0.00	0.00	0.00	1.13	0.00	0.00	1.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	ER3a	ExonRegion	0	1337.86	817.09	3113.54	1827.63	1733.89	2371.77	2205.42	1574.12	3178.52	912.21	922.52	1138.44	3621.07	952.71	474.30	527.31	1577.27	187.52	355.70	599.99	1773.65	2198.76	1084.71	773.02	1498.76	3089.42	2192.99	2434.56	3026.09
31	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	1.20	1.87	1.82	0.00	0.00	0.00	5.22	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00
32	E3a_E6a	KnownJunction	0	1401.32	916.76	335.98	445.84	210.74	755.19	757.41	1227.87	2003.44	596.39	317.26	453.21	1813.50	906.80	698.22	344.86	385.56	356.27	615.03	742.31	485.30	1833.85	318.79	1024.16	1102.95	821.63	309.02	343.23	1108.96
33	Ix	Intron	0	1.19	1.31	0.70	0.60	0.60	1.48	0.41	0.53	2.92	2.22	0.63	0.95	0.86	0.96	2.01	0.62	3.54	0.77	1.02	0.60	2.15	0.76	0.47	0.90	0.66	1.09	0.49	2.01	0.95
34	Ix_SR1	SilentIntronRegion	0	1.96	1.40	0.81	0.18	0.25	1.95	0.51	0.33	3.59	3.23	0.91	1.32	0.69	1.74	0.75	0.38	4.31	0.73	2.02	0.63	2.83	0.50	0.46	1.04	0.40	1.79	0.87	2.41	1.05
35	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	ER5a	ExonRegion	0	0.00	0.00	0.28	0.00	0.00	0.34	2.02	1.38	1.12	0.00	0.30	0.00	0.32	1.13	0.00	0.00	0.25	1.36	1.13	0.70	2.50	3.61	0.45	0.00	1.43	0.00	3.66	0.41	0.00
37	Ix	Intron	0	0.48	0.72	0.37	1.60	2.18	2.46	0.90	0.41	2.01	2.58	0.53	0.00	0.00	0.20	1.03	2.22	2.00	1.36	1.43	0.00	4.15	0.00	0.00	0.96	0.64	0.00	0.41	1.82	0.45
38	Ix_SR1	SilentIntronRegion	0	0.49	0.74	0.39	1.65	2.25	2.54	0.93	0.42	2.04	2.67	0.55	0.00	0.00	0.21	1.06	2.29	2.07	1.41	1.47	0.00	4.19	0.00	0.00	0.99	0.66	0.00	0.42	1.88	0.46
39	E6_Aa	NovelBoundary	0	0.00	0.00	1.42	0.00	0.00	1.96	0.00	0.00	1.55	3.64	0.00	0.00	1.72	0.00	0.00	3.75	0.00	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	4.22	1.35
40	ER6a	ExonRegion	0	2172.50	1431.68	1283.70	1292.58	2226.17	2804.97	3253.44	2553.02	3620.85	1433.33	1427.52	1166.34	3774.79	1255.49	996.04	1084.52	1453.14	700.08	884.59	1086.39	1952.18	3027.09	1583.44	1463.08	2109.89	4289.13	1893.70	2805.35	2702.89
41	E6_Da	NovelBoundary	0	5.25	0.00	0.00	0.00	0.00	5.22	0.00	2.29	5.45	1.80	1.20	1.54	0.00	1.15	0.00	0.00	5.06	9.25	0.00	4.13	0.00	4.91	2.22	0.00	1.55	0.00	0.00	2.20	0.00
42	E6a_E7a	KnownJunction	0	1146.91	724.22	4301.33	3171.11	3641.40	1497.14	2047.20	1368.91	1678.39	1145.36	1228.34	680.56	1896.94	866.59	1042.04	722.22	764.12	505.76	639.08	614.95	978.73	987.47	1426.02	939.28	1398.00	1632.80	1331.15	1125.26	1005.59
43	Ix	Intron	0	7.54	6.24	4.25	3.37	1.97	7.31	2.99	5.19	7.01	8.01	4.68	3.57	2.26	7.02	9.58	6.97	14.07	9.05	5.51	4.99	4.55	2.21	1.74	6.46	4.96	4.86	2.94	5.11	2.73
44	Ix_SR1	SilentIntronRegion	0	5.49	4.21	3.08	2.28	0.97	5.25	1.87	3.30	5.82	6.18	3.43	2.78	1.68	4.11	8.37	5.13	11.21	7.09	3.30	4.53	3.51	1.00	1.01	4.36	3.43	4.37	3.64	4.06	1.88
45	Ix_AR1	ActiveIntronRegion	0	7.47	5.27	4.64	3.52	0.80	13.02	4.89	9.88	6.60	9.32	5.97	3.01	2.38	6.04	7.58	5.88	19.17	11.28	4.18	4.28	5.73	0.59	1.77	5.00	5.53	4.62	2.00	5.58	1.61
46	Ix_AR2	ActiveIntronRegion	0	8.22	13.29	3.63	4.08	4.87	20.43	2.53	0.30	11.21	11.99	9.49	3.08	3.78	4.07	28.39	10.71	14.75	9.08	7.58	6.93	7.13	0.00	0.00	12.56	6.15	0.91	0.68	8.72	3.90
47	Ix_AR3	ActiveIntronRegion	0	7.12	23.78	5.48	7.31	1.39	22.10	9.03	4.34	8.72	9.88	11.28	5.89	4.78	7.55	26.88	15.99	13.38	11.79	9.96	9.56	9.07	0.00	1.52	12.82	8.86	1.57	2.93	8.54	1.88
48	Ix_SR2	SilentIntronRegion	0	7.36	4.60	4.09	3.50	0.95	10.33	4.03	5.52	6.92	8.76	5.37	4.43	3.32	7.18	7.93	9.14	12.30	8.60	6.08	2.64	6.26	0.88	1.87	7.30	7.43	3.69	2.36	3.68	1.31
49	Ix_AR4	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.60	5.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.67	5.32	1.97	2.14	0.00	0.00	0.00	0.00	0.00	0.00
50	Ix_SR3	SilentIntronRegion	0	3.08	6.92	1.60	9.17	0.00	5.93	3.22	2.35	6.84	6.74	1.90	0.49	0.42	3.18	10.15	4.54	6.21	5.34	4.09	3.01	3.47	1.95	0.22	3.10	2.29	3.27	3.22	3.13	1.18
51	Ix_AR5	ActiveIntronRegion	0	1.82	6.57	1.14	0.00	1.66	3.27	4.11	1.56	5.91	3.93	1.82	2.09	1.43	2.31	4.85	5.37	8.63	7.86	9.23	3.15	2.67	0.31	0.92	5.12	1.46	2.40	2.80	2.77	4.88
52	Ix_SR5	SilentIntronRegion	0	3.64	0.00	3.79	0.00	0.00	6.23	0.00	3.13	0.64	1.64	2.02	0.00	0.00	3.85	7.84	2.81	0.00	7.64	7.24	0.00	2.42	0.00	1.02	6.09	4.05	0.89	1.04	0.92	0.00
53	Ix_AR7	ActiveIntronRegion	0	10.89	16.20	6.22	3.24	3.67	11.57	4.53	7.48	7.91	13.47	8.75	4.00	2.54	8.93	6.76	6.14	18.61	9.31	4.81	6.22	6.63	4.34	4.32	9.03	8.60	5.20	3.58	5.39	4.09
54	Ix_SR7	SilentIntronRegion	0	8.35	9.37	5.27	0.00	3.32	2.69	0.54	0.49	4.66	7.70	3.97	4.30	0.88	7.37	12.99	5.06	11.79	9.90	6.82	12.18	3.65	4.47	3.76	3.50	6.08	1.07	0.93	1.11	1.09
55	Ix_AR8	ActiveIntronRegion	0	14.57	9.49	7.73	5.24	5.71	5.46	1.37	6.35	7.06	11.43	3.69	5.29	2.65	9.99	14.68	11.60	18.00	15.20	8.34	12.06	6.74	4.31	1.60	8.71	8.09	6.20	4.35	8.58	5.17
56	Ix_AR9	ActiveIntronRegion	0	2.53	2.69	0.00	0.00	0.00	1.00	0.00	0.84	4.09	4.46	1.30	0.90	1.30	0.99	5.60	0.69	0.00	5.21	0.00	0.00	1.30	1.15	1.81	0.00	1.95	8.57	0.00	7.11	0.00
57	Ix_SR9	SilentIntronRegion	0	13.41	5.52	5.63	5.13	0.57	5.57	4.28	8.06	6.07	8.34	6.27	3.83	1.15	10.90	16.84	8.73	17.19	8.67	6.87	3.06	3.67	3.06	2.91	6.18	4.73	8.33	2.02	5.18	3.73
58	Ix_AR10	ActiveIntronRegion	0	7.86	4.19	6.40	4.84	4.28	7.00	3.37	7.62	9.24	7.73	5.16	6.31	3.67	12.85	10.89	8.70	21.96	9.55	6.85	6.72	3.59	4.41	2.06	9.48	4.70	7.97	2.72	7.11	2.34
59	Ix_SR10	SilentIntronRegion	0	10.88	5.48	4.94	0.00	4.37	9.77	2.18	7.82	14.71	11.03	8.57	5.91	5.65	14.95	7.40	9.58	22.23	15.59	6.90	5.24	5.89	6.36	2.87	12.59	6.22	7.15	2.37	12.18	7.00
60	E7_Aa	NovelBoundary	0	16.52	4.85	7.05	0.00	6.93	10.21	2.69	11.35	8.25	20.13	4.46	8.25	3.31	13.25	36.28	26.93	28.45	5.01	7.87	0.00	3.53	7.00	3.99	26.02	4.32	16.31	8.45	14.15	2.91
61	ER7a	ExonRegion	0	298.63	318.57	422.86	396.78	257.01	427.98	323.87	324.53	410.21	333.29	390.02	291.29	479.25	378.12	262.92	312.29	264.56	256.96	367.57	239.10	298.09	444.49	383.31	437.15	433.91	465.44	419.64	368.05	242.76