Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	THAP7	Gene	0	65.39	31.86	55.09	75.56	43.52	42.10	81.02	84.96	45.86	60.79	20.81	19.30	48.80	46.31	52.77	55.24	71.26	53.94	40.29	85.40	30.22	102.90	67.69	83.19	45.48	45.99	28.10	67.25	31.65
2	399133	Transcript	0	0.38	0.04	0.00	1.30	1.45	0.19	0.00	0.30	0.00	0.02	0.00	0.02	0.00	0.06	0.00	0.48	0.03	0.45	0.00	0.00	0.00	0.32	0.00	0.71	0.00	0.00	0.00	1.07	0.02
3	471723	Transcript	0	4.11	0.62	2.37	0.40	1.35	3.01	5.18	1.64	2.22	2.89	0.00	1.97	0.67	4.09	2.27	3.90	5.69	4.35	1.35	0.84	1.85	2.29	4.69	7.38	1.00	2.97	1.73	3.96	1.85
4	466670	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	476667	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	438917	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	215742	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	471073	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9	498406	Transcript	0	1.98	2.32	2.70	6.57	1.12	1.89	2.62	2.84	3.77	3.46	1.09	1.82	2.50	3.13	3.79	4.55	5.85	1.64	3.86	4.00	1.04	5.13	2.50	5.46	2.23	3.43	2.24	6.05	1.17
10	488975	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1a	ExonRegion	0	0.38	0.04	0.00	1.30	1.45	0.19	0.00	0.30	0.00	0.02	0.00	0.02	0.00	0.06	0.00	0.48	0.03	0.45	0.00	0.00	0.00	0.32	0.00	0.71	0.00	0.00	0.00	1.07	0.02
12	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00	0.00	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
13	E1_Ac	KnownBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Ad	NovelBoundary	0	2.71	0.00	0.00	9.92	12.82	1.65	0.00	2.24	0.00	0.00	0.00	0.00	0.00	1.95	0.00	3.52	0.00	4.62	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	2.29	0.00
15	E1_Af	NovelBoundary	0	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.00	0.00	1.54	0.00	0.00	0.00	3.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1b	ExonRegion	0	6.43	3.28	0.00	7.31	19.93	4.12	0.00	1.84	1.12	2.89	2.38	2.47	6.50	1.81	0.00	7.59	2.00	8.19	0.00	0.00	0.00	10.82	1.81	8.60	0.00	0.00	0.00	3.26	5.37
17	E1_Da	NovelBoundary	0	2.83	0.00	10.02	48.75	14.00	4.95	8.18	0.00	5.09	0.00	0.00	1.42	15.32	0.00	0.00	10.10	9.00	0.00	0.00	3.64	1.56	3.84	8.77	2.33	0.00	8.07	2.19	11.59	3.04
18	E1a_E1g	KnownJunction	1	134.78	31.51	73.95	425.99	545.86	38.90	99.67	147.06	58.65	108.29	59.92	52.71	117.70	40.57	59.60	55.77	76.67	154.12	153.53	51.36	31.37	266.28	141.40	36.13	40.01	88.36	77.28	205.07	62.20
19	E1a_E1k	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
20	ER1c	ExonRegion	0	22.21	4.48	7.45	41.22	86.04	6.00	10.81	15.23	4.60	11.81	4.00	6.75	17.12	5.77	4.58	12.88	6.01	31.76	22.63	5.88	2.46	25.73	12.82	11.15	3.77	6.86	4.50	14.08	11.10
21	ER1d	ExonRegion	1	73.09	8.21	31.87	193.05	212.21	19.66	43.74	62.78	21.57	41.58	21.18	22.63	54.69	17.05	13.44	30.87	34.36	79.15	64.27	21.08	13.41	108.52	62.38	19.58	17.87	34.73	31.32	67.32	29.53
22	ER1e	ExonRegion	1	101.60	23.32	79.67	343.69	351.20	33.95	79.22	113.96	41.57	74.93	44.03	44.65	104.96	27.85	39.76	50.11	65.71	131.27	94.59	38.23	25.82	204.43	108.31	26.46	30.73	72.14	58.24	170.83	56.51
23	ER1f	ExonRegion	1	2.54	3.83	15.34	38.65	9.31	2.98	5.16	6.51	7.39	6.02	0.28	3.29	5.07	1.41	5.98	4.57	7.85	15.52	7.24	3.89	2.55	13.36	12.58	2.32	0.99	6.90	7.25	23.93	4.50
24	E1_Ag	KnownBoundary	0	4.78	3.97	0.00	0.00	0.00	3.15	0.00	11.74	8.10	10.15	0.00	1.23	2.96	0.93	0.00	15.91	9.63	4.62	0.00	26.55	1.89	24.45	6.65	8.55	0.00	1.89	2.53	11.95	3.30
25	ER1g	ExonRegion	1	56.95	16.84	79.58	145.05	148.88	22.92	62.28	85.90	44.46	57.02	27.75	35.60	82.74	26.47	40.69	39.47	70.21	66.81	35.63	47.60	19.14	135.66	81.67	28.75	24.17	51.80	30.67	114.31	53.70
26	E1_Db	KnownBoundary	0	7.96	0.00	2.82	0.00	0.00	1.76	2.23	0.00	1.55	0.00	0.00	1.14	0.00	2.48	8.37	0.00	2.16	4.62	0.00	0.00	0.00	0.00	0.00	2.45	0.00	5.97	0.00	2.29	1.55
27	E1b_E1k	KnownJunction	1	27.07	22.88	43.08	32.79	18.13	21.26	38.33	42.00	35.63	26.80	11.17	14.61	37.77	29.84	28.10	36.34	52.69	61.90	15.74	85.18	18.77	32.87	54.47	27.57	22.88	24.03	8.60	66.95	30.70
28	E1b_E1m	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	1.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	1.82	2.10	0.00	0.00	0.00
29	ER1h	ExonRegion	0	4.11	0.62	2.37	0.40	1.35	3.01	5.18	1.64	2.22	2.89	0.00	1.97	0.67	4.09	2.27	3.90	5.69	4.35	1.35	0.84	1.85	2.29	4.69	7.38	1.00	2.97	1.73	3.96	1.85
30	E1_Ah	KnownBoundary	0	0.00	3.68	0.00	0.00	5.89	3.41	10.53	4.63	1.71	5.19	0.00	3.92	2.77	4.45	0.00	13.39	8.60	9.25	8.09	3.39	4.05	4.52	9.21	15.85	3.67	0.00	2.39	4.58	1.52
31	ER1i	ExonRegion	0	45.38	20.70	27.73	137.84	62.79	29.46	50.28	43.28	15.75	43.64	22.03	8.73	16.42	28.84	47.87	88.19	50.71	38.98	17.93	64.49	26.08	91.70	57.66	45.58	38.54	37.01	19.32	51.55	18.71
32	E1_Ai	KnownBoundary	1	80.57	30.54	74.32	396.01	177.14	63.00	96.35	96.70	41.48	111.21	55.96	16.57	43.50	76.60	125.37	189.41	138.79	48.55	24.28	159.53	62.57	200.30	149.28	110.06	111.19	103.47	50.64	148.41	73.12
33	ER1j	ExonRegion	0	51.19	22.80	30.30	74.60	33.78	30.61	45.85	62.09	18.93	43.51	12.54	10.59	21.20	36.54	44.85	65.10	69.12	31.41	18.14	83.76	26.25	99.54	56.89	66.94	44.78	32.82	16.21	31.02	24.45
34	E1_Aj	KnownBoundary	0	49.31	29.57	23.20	29.98	5.89	20.45	74.78	53.55	27.44	74.78	25.18	19.61	31.14	37.42	35.08	82.24	118.74	38.14	16.18	97.09	19.53	73.51	92.79	55.45	48.87	51.50	20.72	51.00	34.60
35	ER1k	ExonRegion	0	51.66	23.98	41.21	47.43	15.97	39.08	86.58	62.55	21.80	55.46	21.98	14.57	20.43	48.33	56.84	54.78	107.03	44.30	17.05	98.48	20.72	76.78	78.14	85.36	45.22	31.84	36.27	55.31	26.63
36	E1_Ak	KnownBoundary	0	59.63	29.38	82.67	89.51	54.97	34.03	68.49	95.90	28.59	49.77	16.13	12.44	29.01	61.44	72.35	72.06	95.98	60.36	32.37	161.51	36.62	76.33	88.45	116.94	40.65	26.26	36.58	62.81	28.79
37	ER1l	ExonRegion	0	156.20	61.03	67.32	124.75	86.03	78.08	148.37	229.04	66.11	100.83	28.28	27.72	93.37	81.57	70.83	101.87	109.41	101.03	78.23	201.57	51.28	256.56	127.03	150.54	74.84	72.36	38.99	114.92	53.54
38	E1_Dc	KnownBoundary	0	192.23	111.01	101.75	232.08	157.83	168.82	301.24	280.63	171.93	275.46	102.31	61.57	197.40	156.74	136.14	166.16	241.23	234.77	210.40	228.25	86.80	263.55	219.11	323.66	198.52	159.68	71.32	198.28	139.48
39	ER1m	ExonRegion	0	226.49	129.57	117.29	317.69	143.50	210.29	331.42	341.11	196.68	311.21	137.19	78.78	212.82	166.92	144.84	208.15	252.07	179.90	173.74	229.30	136.81	305.56	246.48	321.00	229.25	189.82	103.02	257.73	158.49
40	E1_Dd	KnownBoundary	0	25.36	16.38	18.89	56.51	6.48	11.47	28.15	10.60	22.93	44.86	1.58	8.22	2.80	32.59	0.00	23.33	28.05	18.49	16.18	33.25	20.02	44.44	31.22	39.84	16.75	12.32	20.33	10.60	10.76
41	E1d_E1m	KnownJunction	0	266.32	117.99	98.54	345.11	189.81	215.89	328.64	372.90	179.85	269.23	152.76	75.33	218.61	134.69	169.02	229.88	242.83	126.12	169.94	205.09	151.98	297.34	234.72	260.20	209.69	205.30	100.89	309.85	166.88
42	E1d_E1o	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER1n	ExonRegion	0	29.14	10.41	44.56	23.95	4.65	21.98	23.26	22.70	25.28	36.16	9.96	9.06	11.49	47.38	13.83	28.80	48.11	26.64	17.52	42.39	19.92	63.49	46.42	78.05	26.57	30.65	25.37	11.05	17.23
44	E1e_E1n	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	ER1o	ExonRegion	0	20.01	6.57	51.62	43.88	0.00	29.33	26.88	20.25	34.08	35.13	22.61	11.96	18.62	48.38	33.60	33.74	49.75	24.56	13.58	50.59	24.25	63.70	41.59	96.08	25.25	29.86	32.97	8.69	24.61
46	ER1p	ExonRegion	0	25.41	14.44	42.74	36.70	10.06	32.94	26.79	17.96	39.35	43.01	14.58	10.48	21.48	45.23	18.39	30.32	55.29	36.01	20.09	54.08	24.51	58.63	40.47	87.10	44.42	35.16	33.21	15.69	27.00
47	E1_Am	KnownBoundary	0	18.70	9.21	43.55	39.04	0.00	29.08	28.04	9.06	57.71	36.35	19.93	8.70	27.70	39.53	7.97	46.66	40.85	23.12	40.46	76.50	31.13	77.93	38.86	82.13	47.96	18.80	54.27	5.62	30.08
48	ER1q	ExonRegion	0	291.14	126.04	181.62	332.53	181.52	175.23	344.87	356.39	174.48	224.32	113.62	82.78	186.67	171.05	169.49	194.60	286.90	169.93	151.10	291.92	128.22	376.30	245.38	351.69	190.80	160.44	161.59	293.26	149.50
49	E1_An	KnownBoundary	0	98.68	31.41	60.72	143.22	61.90	45.20	94.98	119.74	65.08	62.71	22.84	28.67	54.71	58.43	24.12	52.25	93.30	4.62	0.00	93.70	40.35	103.36	82.05	82.96	32.20	35.92	31.06	101.72	38.36
50	E1_Ao	KnownBoundary	0	147.35	25.98	97.09	121.22	144.87	74.43	148.19	155.22	58.07	73.86	34.07	30.36	54.33	60.02	41.86	64.41	100.39	4.62	0.00	91.30	49.46	158.01	59.05	152.23	66.34	53.13	77.48	166.02	65.93
51	ER1r	ExonRegion	0	342.96	82.12	215.44	416.82	368.63	195.20	324.54	410.56	166.28	244.00	83.31	80.40	151.98	177.78	179.22	184.74	284.49	174.67	122.20	328.85	129.80	382.18	238.69	352.79	162.94	165.02	148.35	352.09	139.59
52	ER1s	ExonRegion	0	270.91	95.30	236.92	264.77	237.96	159.76	278.59	331.66	152.65	204.65	70.93	68.92	168.16	161.16	163.03	157.68	264.99	151.90	108.84	277.30	111.68	307.83	206.10	268.66	140.34	139.45	114.49	265.26	124.38
53	E1_Df	NovelBoundary	0	2.54	0.00	1.54	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	1.81	0.00	0.00	0.00	3.37	2.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.25	0.00
54	E1f_E2a	KnownJunction	0	293.69	135.73	227.72	381.56	247.14	244.02	420.47	362.64	227.08	333.67	96.26	72.89	236.51	174.20	221.84	166.61	307.72	160.15	80.70	236.35	149.21	429.00	281.61	297.52	160.60	247.14	102.97	363.94	166.88
55	Ix_SR2	SilentIntronRegion	0	1.36	0.00	0.00	0.00	0.00	0.47	0.00	0.00	1.16	0.73	0.00	1.03	0.00	0.68	0.00	0.85	2.74	2.77	2.14	0.00	0.00	3.73	0.00	2.22	1.65	0.54	0.00	1.12	0.00
56	Ix_SR1	SilentIntronRegion	0	0.11	2.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.79	0.00	0.00	0.00	1.29	0.00	1.54	0.70	0.00	0.00	0.00	0.00	4.58	0.00	0.00	0.68	0.00	0.00	0.00	0.00
57	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	5.09	0.00	3.11	0.00	0.00	1.14	0.00	0.00	0.00	0.00	1.13	4.62	0.00	0.00	0.00	4.28	5.02	5.44	3.75	0.00	0.00	0.00	0.00
58	ER2a	ExonRegion	0	221.06	123.30	123.55	183.50	115.13	175.73	338.62	292.49	154.63	240.38	86.18	48.52	164.88	126.12	165.93	170.17	180.55	160.97	154.83	254.20	114.60	301.21	198.20	264.98	161.97	167.19	77.91	220.48	72.77
59	E2_Da	KnownBoundary	0	155.31	68.16	83.89	135.02	126.00	79.42	210.32	175.82	74.43	160.02	48.40	46.23	88.05	103.25	206.69	110.08	130.76	178.65	32.37	167.55	77.85	247.66	150.65	197.63	111.87	91.15	72.01	148.95	66.92
60	ER2b	ExonRegion	0	166.68	76.96	109.48	161.05	107.34	101.69	260.80	218.34	106.65	141.42	35.22	60.20	137.32	111.55	169.35	126.17	199.15	116.64	59.05	192.80	73.87	267.92	181.43	190.58	122.07	118.32	66.59	166.15	93.31
61	E2_Db	KnownBoundary	0	197.48	78.82	140.69	192.61	127.92	141.15	347.92	250.87	158.90	166.13	42.20	69.10	159.73	103.29	185.97	160.95	230.11	125.35	56.65	197.98	84.59	296.08	205.52	240.10	123.13	183.20	74.35	212.53	101.91
62	ER2c	ExonRegion	0	89.16	52.38	104.07	97.22	42.65	43.50	120.47	130.72	79.19	73.33	18.63	32.58	88.14	63.21	107.17	81.61	94.86	97.96	69.86	139.29	33.95	144.89	99.10	101.84	51.37	61.77	23.37	107.72	40.59
63	E2_Dc	KnownBoundary	1	75.50	88.71	115.95	79.16	107.14	25.78	71.40	60.07	71.47	47.34	20.59	14.61	59.84	52.58	158.66	56.76	68.81	131.51	88.57	189.30	27.07	117.36	52.65	75.97	65.16	68.88	7.36	108.78	60.48
64	E2_Dd	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.39	0.00	0.00	0.00	0.00	0.00	2.46	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	2.25	0.00
65	E2_De	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
66	E2_Df	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	E2_Dg	KnownBoundary	0	0.00	0.00	2.44	0.00	0.00	0.00	0.00	0.00	1.49	0.00	0.00	1.39	1.24	1.13	0.00	0.00	4.32	0.00	0.00	0.00	0.00	2.48	2.51	2.81	0.00	1.80	0.00	2.25	1.62
68	ER2d	ExonRegion	1	35.67	30.62	80.56	24.86	59.18	11.93	32.57	21.80	31.77	11.95	8.43	11.73	32.79	25.32	69.00	19.94	32.30	65.06	50.51	92.75	13.47	67.42	30.38	37.52	28.19	37.91	5.42	56.53	31.35
69	ER2e	ExonRegion	1	3.57	3.28	23.19	2.44	13.28	2.29	4.03	4.91	5.62	2.89	1.19	5.36	10.83	7.86	7.47	5.91	9.35	11.83	18.10	15.93	1.90	10.22	9.64	9.32	8.10	13.62	0.00	14.67	6.71
70	ER2f	ExonRegion	0	2.14	0.00	8.98	0.00	9.96	1.37	2.02	3.68	4.49	1.44	0.00	3.71	3.90	6.35	0.00	5.06	8.01	2.73	13.58	5.62	1.43	9.01	7.23	6.45	5.72	7.86	0.00	9.78	2.68
71	ER2g	ExonRegion	0	2.14	0.00	6.73	0.00	4.98	1.37	2.02	1.84	2.25	1.44	0.00	2.47	2.60	5.44	0.00	0.00	6.01	0.00	9.05	5.62	1.43	7.21	7.23	6.45	2.86	4.71	0.00	8.15	2.68
72	ER2h	ExonRegion	0	1.98	2.32	2.70	6.57	1.12	1.89	2.62	2.84	3.77	3.46	1.09	1.82	2.50	3.13	3.79	4.55	5.85	1.64	3.86	4.00	1.04	5.13	2.50	5.46	2.23	3.43	2.24	6.05	1.17