Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	CRKL	Gene	0	116.17	263.17	277.67	158.88	97.89	254.45	79.58	162.50	208.22	302.14	375.42	281.47	298.72	313.71	117.70	254.19	246.37	255.97	251.51	112.23	249.40	166.92	316.34	219.80	238.12	354.36	356.47	228.49	168.96
2	354336	Transcript	0	42.67	98.61	106.63	63.17	49.31	97.97	30.62	62.69	81.75	117.11	144.69	113.60	119.15	118.62	46.88	104.62	93.81	101.57	100.87	45.89	97.55	63.51	123.17	89.05	95.35	144.05	148.54	90.47	68.29
3	411769	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
4	ER1a	ExonRegion	0	8.81	1.09	2.37	4.06	24.91	5.80	3.81	3.07	1.87	8.34	2.78	5.91	4.04	8.26	1.24	32.06	8.79	34.27	19.61	11.87	4.75	15.62	21.30	2.15	4.45	34.23	4.68	17.21	4.03
5	ER1b	ExonRegion	0	102.55	80.66	169.93	78.22	46.37	125.14	50.97	76.05	20.67	140.01	113.46	111.47	83.25	188.09	34.88	164.86	146.52	213.05	88.98	74.66	117.47	132.80	208.61	44.56	83.93	199.26	70.74	122.62	55.22
6	E1_Da	NovelBoundary	0	0.00	3.78	0.92	0.00	0.00	0.00	2.86	0.00	1.49	5.19	0.00	0.00	0.00	3.23	15.95	0.00	1.22	0.00	0.00	0.00	0.00	0.00	0.00	3.05	3.45	0.00	0.00	0.00	0.00
7	E1a_E2a	KnownJunction	0	130.12	215.71	470.49	221.08	92.25	312.58	91.89	204.54	48.11	417.99	443.01	287.13	145.37	367.98	33.69	285.72	253.21	341.62	250.42	150.84	265.45	167.49	383.90	142.84	201.44	496.90	253.11	294.39	107.16
8	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62	0.95	0.00	0.00	0.00	0.00	0.00	0.00	3.73	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
9	Ix_SR1	SilentIntronRegion	0	1.82	1.17	0.00	0.00	0.00	1.35	1.00	0.00	1.79	2.78	0.73	0.24	1.16	0.48	2.05	0.00	2.06	1.47	2.72	0.01	1.45	0.00	0.00	1.26	0.70	0.00	0.71	0.38	0.58
10	Ix_AR1	ActiveIntronRegion	0	1.33	3.66	0.52	1.11	0.00	1.74	0.20	0.71	2.74	4.05	0.46	0.76	1.85	1.08	4.54	0.77	3.15	2.55	7.72	1.70	2.00	0.00	0.28	0.93	0.84	1.07	0.71	0.63	1.54
11	Ix_SR2	SilentIntronRegion	0	0.00	3.53	0.00	0.00	0.00	3.85	0.30	0.88	3.01	1.28	2.27	0.00	1.24	0.49	8.48	0.00	1.29	0.00	7.23	0.00	0.47	0.00	0.00	0.86	0.00	0.90	0.00	0.00	0.00
12	E2_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.46	0.00	0.00	1.55	3.60	0.00	0.00	1.43	1.13	8.37	0.00	0.00	0.00	16.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	2.05
13	ER2a	ExonRegion	0	157.88	301.87	360.91	184.34	102.90	358.14	102.95	202.25	78.51	439.80	571.09	316.10	257.75	407.92	54.67	287.41	315.04	339.38	322.34	130.15	319.09	197.76	419.75	160.97	287.79	492.44	383.68	312.73	147.82
14	E2_Da	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	1.73	0.00	0.00	1.28	1.52	0.00	0.00	3.09	1.37	0.00	3.14	5.51	0.00	0.00	12.07	0.00	0.00	2.27	5.74	0.00	0.00	0.00	2.29	2.58
15	E2a_E3a	KnownJunction	0	186.87	313.25	355.88	265.52	73.83	287.45	86.11	200.95	88.01	356.43	624.12	406.74	310.39	419.03	79.13	294.60	373.83	361.15	323.47	130.17	316.67	172.11	375.78	160.13	267.89	453.90	273.29	300.01	171.11
16	Ix_AR1	ActiveIntronRegion	0	0.94	2.27	0.00	0.00	0.00	1.32	0.78	0.81	3.09	1.74	1.03	1.89	1.20	0.79	1.71	1.01	4.18	0.85	1.05	0.22	1.10	0.16	0.40	1.65	0.62	1.03	0.00	0.41	1.10
17	E3_Aa	NovelBoundary	0	0.00	4.56	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	8.37	0.00	0.97	0.00	0.00	0.00	1.97	2.19	0.00	0.00	0.00	0.00	0.00	0.00	1.88
18	ER3a	ExonRegion	0	160.56	304.01	321.24	180.26	83.35	276.30	82.39	206.29	86.75	349.87	503.59	311.34	256.59	384.63	55.49	267.74	317.23	302.69	289.11	112.40	288.20	195.30	371.68	153.53	270.39	445.74	343.67	292.66	161.67
19	E3_Da	KnownBoundary	0	92.73	334.29	323.17	315.34	136.76	312.93	86.79	209.71	92.30	363.46	492.52	305.45	233.36	318.97	46.84	236.00	275.18	294.75	210.40	137.94	309.41	178.52	328.05	149.48	231.86	426.40	330.54	261.14	151.30
20	E3a_E3b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.99	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
21	ER3b	ExonRegion	0	119.19	294.74	316.41	185.46	118.05	288.10	88.06	184.99	243.37	342.99	431.28	334.90	353.39	347.59	136.61	281.80	272.63	270.43	283.01	125.80	287.89	174.89	348.22	265.01	281.60	396.36	440.94	250.93	198.15
22	E3_Ab	KnownBoundary	0	126.11	533.23	173.71	223.67	118.49	368.71	127.70	223.10	735.37	385.16	513.94	372.79	694.72	335.87	360.97	321.52	328.91	268.16	444.86	124.96	347.48	200.35	392.62	462.73	313.31	433.86	564.32	369.25	373.58
23	ER3c	ExonRegion	0	66.78	300.99	120.83	91.40	56.05	151.33	51.35	107.25	440.93	165.90	217.22	176.32	348.53	193.32	208.85	191.29	154.12	146.71	232.93	72.94	143.35	134.98	179.45	290.15	154.76	183.31	261.62	157.25	187.04
24	ER3d	ExonRegion	0	0.00	0.00	1.12	0.00	4.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	3.26	2.68