Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	MCM3APAS	Gene	0	7.56	8.22	5.61	12.16	12.79	9.39	6.93	4.29	8.27	11.97	6.29	12.08	3.86	8.29	6.43	11.72	11.02	8.07	9.07	5.19	13.84	1.58	3.95	5.82	4.53	3.07	6.62	9.24	4.49
2	333280	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
3	414659	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	327553	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	432735	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	444998	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	455567	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	421927	Transcript	0	0.56	0.00	0.00	5.65	3.85	0.00	1.05	0.00	0.00	0.38	0.60	0.74	1.02	0.72	0.00	0.00	0.01	0.00	1.68	0.72	1.50	0.00	1.34	0.00	0.00	0.00	4.36	0.43	0.00
9	420074	Transcript	0	1.60	2.50	4.01	1.83	3.87	3.35	1.62	0.58	3.47	3.70	4.53	6.24	2.25	2.88	0.81	5.03	2.02	3.38	3.83	3.35	4.08	1.10	3.21	2.63	1.81	1.95	5.17	5.90	2.50
10	ER1a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.34	1.51	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	ER1b	ExonRegion	1	0.00	1.64	1.12	25.59	5.81	6.19	32.92	0.00	1.12	2.17	0.00	0.82	2.60	0.00	0.00	0.00	0.83	0.00	0.00	2.34	2.38	0.00	3.62	0.00	1.43	0.00	1.83	7.61	1.34
12	E1_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.27	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.48	0.00	0.00	0.00	0.00	0.00	0.00
13	E1a_E2b	KnownJunction	0	0.00	0.00	1.37	9.06	5.89	0.00	5.55	2.54	0.00	7.55	0.00	2.92	1.62	0.00	0.00	0.00	0.00	0.00	8.09	0.00	2.05	0.00	5.02	0.00	1.59	0.00	0.00	0.00	2.05
14	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.56	4.05	4.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E1a_E4a	KnownJunction	1	11.86	13.19	9.77	116.91	69.12	30.27	155.40	5.08	17.36	23.09	0.00	11.36	13.09	1.88	0.00	3.82	3.96	9.25	0.00	4.13	39.91	0.00	14.58	0.00	4.77	0.00	2.48	15.50	3.66
16	E1a_E5a	KnownJunction	0	3.01	0.00	4.29	31.71	21.66	7.71	8.70	0.00	0.00	6.11	2.94	4.13	3.60	1.13	0.00	6.73	0.00	4.62	0.00	0.00	3.97	2.48	0.00	0.00	0.00	1.76	0.00	14.60	1.65
17	E1a_E5b	NovelJunction	0	0.00	0.00	0.00	0.00	7.37	1.50	2.80	0.00	0.00	0.00	8.00	1.54	0.00	3.37	0.00	2.91	0.00	0.00	0.00	0.00	0.00	0.00	2.51	0.00	1.93	2.19	0.00	0.00	0.00
18	ER1c	ExonRegion	1	2.14	9.85	1.96	42.05	24.91	11.68	63.50	1.84	5.34	9.38	0.00	4.33	5.85	0.45	0.00	1.90	1.75	0.00	1.13	2.81	10.34	0.00	6.33	0.00	1.43	0.00	1.83	14.67	2.01
19	ER1d	ExonRegion	1	6.43	9.85	3.74	53.63	29.89	17.87	80.63	5.52	10.11	17.81	0.00	6.18	9.09	0.91	0.00	2.53	2.00	0.00	4.53	2.81	19.97	0.00	9.04	0.00	1.43	0.00	1.83	16.30	2.68
20	ER1e	ExonRegion	1	6.54	11.24	5.79	64.66	35.66	20.76	97.50	5.72	11.06	22.57	1.25	10.87	10.32	2.15	0.00	3.20	2.00	6.61	4.53	4.44	26.20	0.09	9.90	0.00	3.61	0.08	3.37	17.50	2.68
21	ER1f	ExonRegion	0	1.13	0.00	0.00	11.31	7.70	0.00	2.10	0.00	0.00	0.76	1.20	1.48	2.05	1.43	0.00	0.00	0.02	0.00	3.36	1.45	3.00	0.00	2.68	0.00	0.00	0.00	2.15	0.86	0.00
22	E1b_E5b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	6.56	0.00	0.00
23	ER2a	ExonRegion	0	1.90	0.00	1.28	0.46	0.02	1.14	0.26	0.35	0.07	0.79	0.15	1.47	1.25	0.52	0.00	0.12	0.64	1.26	0.61	1.57	2.54	0.00	0.23	0.00	0.08	0.00	0.96	0.80	0.34
24	E2_Ab	KnownBoundary	0	0.00	0.00	3.34	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	1.39	1.34	0.00	0.00	0.00	2.36	0.00	0.00	0.00	5.78	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
25	ER2b	ExonRegion	0	1.09	0.00	2.02	3.22	4.23	4.03	3.28	1.20	0.29	3.88	1.18	2.99	4.09	1.22	0.00	1.71	0.50	1.64	5.16	1.55	4.75	0.05	1.17	0.65	1.54	0.08	4.97	2.26	2.18
26	E2_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.72	0.00	1.72	1.04	0.00	0.00	0.00	4.62	0.00	0.00	16.32	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
27	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.92	0.00	0.00	1.92	3.07	1.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.13	2.05	0.00	0.00	0.00	0.00	0.00	0.00	4.58	1.75
28	E2a_E5a	KnownJunction	0	55.45	147.07	66.70	42.06	71.33	83.49	15.73	86.24	134.20	84.37	95.98	105.00	145.40	109.52	124.57	166.31	78.80	50.99	0.00	29.03	127.59	80.02	125.93	161.62	97.63	122.73	89.65	93.59	92.64
29	I2_AR1	ActiveIntronRegion	0	3.86	5.80	5.02	2.15	11.72	5.77	4.23	1.66	10.26	11.26	4.28	5.73	3.10	6.10	0.00	15.96	6.72	8.67	7.67	2.48	6.42	1.62	5.97	8.36	2.57	5.19	10.44	8.80	4.82
30	E3_Aa	NovelBoundary	1	5.78	0.00	5.61	0.00	6.04	15.73	2.92	0.00	7.77	4.07	12.43	13.22	5.51	8.42	27.90	13.85	11.52	23.12	24.28	4.13	17.21	9.77	11.48	11.72	13.07	9.78	37.42	24.08	3.47
31	ER3a	ExonRegion	1	2.90	7.49	10.74	5.04	11.60	8.92	1.68	1.39	10.33	8.39	10.37	15.64	5.51	8.11	2.44	14.98	5.41	8.89	10.89	4.35	7.66	3.30	9.39	7.88	5.33	5.84	14.55	12.32	5.42
32	E3_Da	NovelBoundary	0	0.00	4.85	0.00	9.92	6.93	3.57	0.00	7.32	9.32	4.07	0.00	2.74	0.00	4.61	0.00	17.29	3.65	0.00	0.00	0.00	7.54	0.00	2.51	5.08	0.00	0.00	2.09	2.25	2.94
33	Ix	Intron	0	1.37	3.47	1.44	3.15	2.10	1.77	0.87	1.98	3.62	1.86	0.26	4.38	1.12	1.66	5.53	7.34	2.89	3.73	4.12	2.04	1.84	0.39	0.00	5.55	2.46	1.35	0.79	3.51	1.58
34	Ix_AR1	ActiveIntronRegion	0	1.84	2.78	1.93	4.21	2.81	2.38	1.16	2.65	4.85	2.07	0.34	4.09	1.50	1.96	7.40	7.16	3.87	3.89	2.76	2.16	2.05	0.52	0.00	6.82	2.88	1.81	0.53	4.70	2.12
35	Ix_SR1	SilentIntronRegion	0	0.00	5.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	5.49	0.00	0.81	0.00	8.17	0.00	3.45	8.58	1.78	1.28	0.00	0.00	1.92	1.28	0.00	1.64	0.00	0.00
36	E4_Aa	NovelBoundary	0	5.49	3.49	5.51	8.41	5.75	0.00	5.09	4.28	10.05	3.91	0.00	11.42	1.59	4.43	8.37	11.17	5.06	4.62	0.00	4.13	10.75	2.48	0.00	8.61	3.37	0.00	0.00	0.00	4.46
37	ER4a	ExonRegion	1	5.95	6.28	4.96	24.99	16.06	8.84	38.53	7.35	13.73	12.67	5.87	6.20	5.76	5.16	0.00	4.20	6.11	2.91	4.75	6.28	24.18	1.77	3.39	3.20	4.23	1.54	14.74	10.00	5.30
38	E4_Da	NovelBoundary	0	5.90	8.73	3.74	21.57	0.00	0.00	8.58	4.48	6.46	13.50	2.85	5.60	4.97	7.40	8.37	10.10	11.07	9.25	8.09	4.13	11.19	2.29	0.00	13.70	0.00	3.52	2.44	2.07	0.00
39	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	10.78	14.74	3.30	4.52	0.00	0.00	0.00	0.00	2.92	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	5.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E4a_E5b	NovelJunction	0	0.00	0.00	0.00	0.00	20.34	1.80	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	Ix	Intron	0	3.45	8.52	2.02	4.81	3.93	2.77	2.71	1.73	7.81	8.33	1.92	6.20	1.39	1.16	8.52	9.89	4.81	4.14	7.29	0.74	7.08	1.94	1.46	5.77	3.83	0.63	1.23	2.63	3.49
42	Ix_SR1	SilentIntronRegion	0	3.31	6.19	0.81	4.75	2.16	2.27	3.56	1.82	8.36	8.48	2.19	5.73	1.11	1.28	6.84	8.96	4.03	4.14	7.70	0.61	6.50	1.87	0.52	5.41	4.21	1.04	1.21	2.24	3.38
43	Ix_AR1	ActiveIntronRegion	0	3.69	12.23	3.92	4.94	6.73	3.55	1.39	1.60	7.01	8.17	1.50	6.98	1.83	0.96	11.20	11.41	6.05	4.17	6.70	0.95	8.04	2.05	2.92	6.38	3.26	0.00	1.26	3.25	3.70
44	Ix_AR1	ActiveIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.94	0.92	0.00	0.00	0.00	0.00	0.00	1.84	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
45	Ix_AR2	ActiveIntronRegion	0	2.50	1.87	0.38	0.42	4.74	1.23	1.40	0.51	1.75	2.88	0.00	1.20	0.17	1.48	0.00	1.03	2.34	2.94	1.77	0.92	5.40	0.25	1.00	1.49	1.58	1.31	3.30	0.90	0.74
46	E5_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
47	E5_Ab	NovelBoundary	1	48.07	117.70	138.63	29.33	45.24	82.22	16.65	96.25	237.32	80.29	90.89	171.05	209.25	169.56	127.17	175.49	175.32	38.27	40.24	26.63	125.59	76.28	114.01	160.60	105.85	109.69	64.90	91.03	157.14
48	ER5a	ExonRegion	0	0.00	0.00	2.24	14.63	19.93	12.03	12.09	0.00	0.56	12.27	3.57	7.42	1.62	2.72	0.00	0.63	1.75	9.55	0.00	2.81	7.85	0.00	1.81	0.00	2.14	0.00	3.21	11.82	1.34
49	ER5b	ExonRegion	0	13.43	9.57	6.50	6.31	25.02	15.36	37.71	8.31	14.69	20.04	12.23	11.40	5.67	9.96	17.29	15.91	12.44	8.26	10.44	12.77	22.34	2.74	6.75	6.38	6.92	7.89	14.42	14.63	5.04
50	E5_Da	KnownBoundary	0	7.67	3.78	6.05	10.78	6.78	6.71	5.44	0.00	7.22	8.99	1.33	5.63	4.39	6.67	18.34	9.49	12.09	0.00	0.00	3.47	1.76	0.00	0.00	0.00	3.86	2.02	0.00	8.31	1.42
51	E5a_E6a	KnownJunction	0	3.01	0.00	3.31	0.00	27.26	1.50	16.25	4.83	0.00	1.64	3.89	7.41	2.93	2.90	0.00	0.00	0.00	0.00	0.00	0.00	3.29	2.38	2.51	0.00	1.55	2.19	3.78	5.30	0.00
52	ER5c	ExonRegion	0	12.21	13.74	4.84	12.41	10.72	11.91	5.21	3.70	13.76	12.91	6.42	9.77	2.65	11.80	16.60	20.91	22.45	12.78	9.98	6.82	12.93	1.86	1.07	8.11	7.88	3.26	1.93	8.11	6.47
53	E5_Db	NovelBoundary	0	3.07	3.97	6.63	0.00	0.00	1.50	7.95	0.00	0.00	6.83	1.52	1.57	0.00	1.02	0.00	0.00	1.35	0.00	0.00	0.00	8.26	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00
54	Ix	Intron	0	10.29	5.16	5.35	6.56	3.35	6.92	1.38	4.42	2.31	2.64	2.18	2.90	0.89	5.27	4.52	9.12	5.63	6.83	5.48	3.11	11.59	1.44	0.21	2.95	3.11	1.98	0.42	5.22	3.36
55	Ix_AR1	ActiveIntronRegion	0	10.32	5.17	5.37	6.57	3.36	6.93	1.39	4.43	2.31	2.65	2.18	2.90	0.89	5.28	4.53	9.14	5.65	6.84	5.49	3.12	11.61	1.45	0.21	2.96	3.11	1.98	0.42	5.23	3.37
56	Ix	Intron	0	9.11	1.64	10.79	10.53	7.43	6.20	6.87	5.51	3.44	9.54	4.87	9.74	4.99	4.11	0.77	1.56	3.92	7.26	4.53	4.03	12.57	0.95	5.79	2.60	3.07	3.22	2.21	4.87	2.95
57	Ix_AR1	ActiveIntronRegion	0	4.45	3.53	2.66	1.63	0.92	3.82	1.79	0.75	0.62	2.30	0.93	2.98	5.15	1.08	3.32	0.00	1.41	2.22	0.00	0.00	9.98	2.14	0.87	1.75	1.11	3.90	0.00	7.24	0.00
58	Ix_SR1	SilentIntronRegion	0	8.02	1.70	11.20	11.01	7.57	6.58	7.48	5.79	3.51	9.71	5.08	10.39	4.43	4.19	0.96	1.84	4.26	6.26	4.26	4.59	14.38	1.12	5.67	2.25	2.92	3.62	2.94	4.75	2.49
59	Ix_AR2	ActiveIntronRegion	0	12.61	1.29	10.64	10.27	7.81	5.48	5.83	5.28	3.59	9.95	4.76	8.77	6.54	4.23	0.00	0.99	3.27	10.55	5.75	2.98	8.08	0.36	6.67	3.64	3.72	2.08	0.50	4.98	4.54
60	Ix	Intron	0	4.30	1.51	6.82	13.42	5.89	5.97	3.50	2.71	4.76	11.58	4.06	6.15	4.15	3.66	0.73	2.65	3.09	7.23	4.70	3.82	19.45	1.45	5.08	4.31	1.43	0.74	6.61	4.47	1.74
61	Ix_AR1	ActiveIntronRegion	0	1.24	2.77	3.84	0.00	0.00	0.00	2.65	0.87	0.35	3.88	1.82	1.24	0.75	0.91	0.00	2.00	0.00	0.00	2.14	2.66	9.83	0.85	2.66	0.00	0.00	0.99	1.54	3.95	2.05
62	Ix_AR2	ActiveIntronRegion	0	2.14	3.28	9.13	0.00	0.00	2.56	10.08	1.84	2.91	13.98	3.46	3.37	3.66	2.76	0.00	6.33	1.23	2.73	5.55	5.62	29.95	2.38	7.97	0.00	0.00	1.57	8.82	4.89	4.03
63	Ix_AR3	ActiveIntronRegion	0	2.14	3.28	10.72	0.00	0.00	6.87	12.09	1.84	4.49	19.57	3.44	7.56	7.65	4.03	0.00	7.59	4.01	4.85	5.53	5.62	39.94	5.41	16.48	1.67	0.95	1.57	9.16	4.53	4.03
64	Ix_AR4	ActiveIntronRegion	0	2.92	0.00	12.44	0.00	0.00	6.87	11.36	1.51	7.25	17.19	3.68	13.72	7.79	3.63	0.00	5.29	4.01	3.23	6.58	4.85	31.51	4.75	15.95	2.15	2.86	0.57	12.15	3.26	3.29
65	Ix_AR5	ActiveIntronRegion	0	4.29	0.00	14.43	0.00	0.00	7.86	6.48	1.97	9.87	15.88	4.59	15.02	8.44	4.28	0.00	2.89	4.94	11.89	7.11	2.81	20.68	3.61	12.66	5.53	3.06	0.00	15.18	5.36	2.68
66	Ix_AR6	ActiveIntronRegion	0	7.45	0.86	12.56	15.63	8.57	6.14	5.65	5.12	8.05	17.16	5.57	9.82	8.45	6.09	1.47	2.68	5.28	6.45	3.79	4.73	20.91	3.84	7.56	9.26	2.56	0.84	9.19	7.94	1.50
67	Ix_AR7	ActiveIntronRegion	0	3.38	1.68	4.16	14.82	5.84	6.22	1.91	1.96	3.53	9.19	3.60	4.57	2.35	2.85	0.57	2.32	2.37	8.05	5.00	3.40	18.05	0.27	3.34	2.85	1.05	0.66	5.31	3.13	1.60
68	Ix	Intron	0	2.83	2.44	1.47	3.15	6.44	6.65	2.66	1.62	4.44	7.62	8.37	6.24	5.12	2.59	0.00	10.91	1.97	13.69	5.62	2.42	23.83	0.00	6.36	1.89	5.03	0.00	0.00	8.60	1.76
69	Ix_SR1	SilentIntronRegion	0	2.83	2.44	1.47	3.15	6.44	6.65	2.66	1.62	4.44	7.62	8.37	6.24	5.12	2.59	0.00	10.91	1.97	13.69	5.62	2.42	23.83	0.00	6.36	1.89	5.03	0.00	0.00	8.60	1.76
70	Ix	Intron	0	6.60	4.02	6.66	7.00	8.80	5.89	3.94	3.46	6.15	12.15	4.02	9.82	5.74	4.18	1.86	7.16	5.83	8.49	6.24	2.85	15.43	1.49	2.99	3.39	1.83	4.96	5.50	8.57	2.97
71	Ix_SR1	SilentIntronRegion	0	4.09	1.23	0.00	0.00	1.87	4.74	4.64	2.82	4.09	10.52	2.28	5.20	5.96	1.21	0.00	5.44	2.85	5.27	3.68	1.06	9.85	2.07	3.47	1.65	0.55	0.60	4.92	1.88	1.28
72	Ix_AR1	ActiveIntronRegion	0	7.45	4.85	8.56	9.00	10.85	6.38	3.89	3.73	6.88	12.97	4.60	11.31	5.88	5.07	2.40	7.84	6.78	9.58	7.10	3.40	17.36	1.39	2.97	3.95	2.21	6.22	5.84	10.55	3.49
73	E6_Aa	NovelBoundary	0	19.64	0.00	1.02	7.98	13.71	5.41	0.00	4.23	7.92	10.67	2.94	9.58	3.25	5.56	0.00	12.93	7.81	0.00	0.00	2.98	24.39	0.00	2.51	7.84	1.74	7.17	2.09	2.25	1.65
74	ER6a	ExonRegion	0	7.98	7.65	6.26	19.70	19.71	10.73	8.71	7.63	5.67	17.44	7.01	18.49	5.02	9.18	1.55	7.77	8.56	7.16	11.48	5.25	21.81	1.28	5.69	5.91	3.07	2.98	8.98	12.61	4.19