Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	AP000304.1	Gene	0	1.66	1.38	0.81	0.00	1.89	2.39	0.78	0.18	2.54	3.35	1.38	1.37	0.62	3.02	2.84	5.24	2.60	4.00	6.17	1.60	4.27	0.35	1.05	1.66	1.52	1.06	0.00	2.05	1.16
2	439593	Transcript	0	0.60	0.54	0.78	0.00	0.83	1.21	0.27	0.06	0.91	1.27	0.56	1.09	0.23	2.39	1.15	2.53	2.84	1.65	4.12	1.32	2.84	0.46	0.42	1.25	0.63	0.42	0.00	1.78	0.45
3	ER1a	ExonRegion	0	0.00	0.00	0.21	0.00	0.00	0.34	0.00	0.00	0.00	0.00	0.00	1.10	0.00	1.84	0.00	0.27	3.90	0.00	2.99	1.43	2.48	0.00	0.00	1.29	0.00	0.00	0.00	1.53	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	2.57	0.00	0.00	1.80	0.00	0.00	0.00	0.00	0.00	3.34	0.00	4.59	0.00	2.91	8.60	0.00	8.09	3.97	5.58	0.00	0.00	2.57	0.00	0.00	0.00	3.95	0.00
5	E1a_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	3.04
6	Ix	Intron	0	2.82	6.32	1.00	1.71	1.75	5.07	2.41	0.88	6.01	5.33	0.57	1.84	0.39	1.56	7.78	5.83	2.31	1.19	7.63	0.99	4.76	0.00	0.00	1.79	1.02	0.75	0.88	0.78	0.48
7	Ix_SR2	SilentIntronRegion	0	4.06	3.18	1.57	0.00	0.00	3.91	1.27	0.58	6.73	4.94	0.37	1.40	0.00	1.41	8.33	3.26	0.82	0.61	4.02	1.73	6.13	0.00	0.00	0.96	0.90	0.49	0.00	0.04	0.00
8	Ix_AR1	ActiveIntronRegion	0	0.00	6.57	0.00	0.00	0.00	8.71	0.00	0.00	5.62	9.14	0.00	3.71	0.00	0.00	0.00	2.53	3.01	0.00	4.53	0.00	4.28	0.00	0.00	2.15	0.00	0.00	0.00	1.63	0.00
9	Ix_SR1	SilentIntronRegion	0	2.14	8.37	0.67	2.86	2.92	5.78	3.21	1.10	5.63	5.55	0.71	2.10	0.64	1.71	7.70	7.60	3.26	1.60	10.08	0.55	3.97	0.00	0.00	2.34	1.14	0.93	1.46	1.24	0.80
10	Ix	Intron	0	2.12	5.58	1.18	4.56	1.90	7.43	3.27	1.62	6.32	4.44	4.08	3.81	0.64	3.28	6.24	9.70	6.54	3.48	9.25	3.45	7.71	0.13	0.51	3.95	1.72	1.33	0.65	2.59	1.98
11	Ix_SR2	SilentIntronRegion	0	2.36	2.97	0.83	3.43	0.58	5.49	5.30	1.10	4.77	4.02	2.27	2.85	1.13	2.27	7.12	8.55	3.54	4.65	8.01	3.22	5.50	0.00	0.00	2.41	1.59	1.69	0.66	4.70	2.40
12	Ix_AR1	ActiveIntronRegion	0	2.15	6.66	1.41	5.26	2.09	8.52	2.44	1.91	6.94	4.70	5.11	4.29	0.46	3.84	6.25	10.65	8.20	2.79	10.18	3.59	8.79	0.19	0.69	4.78	1.86	1.26	0.68	1.82	1.91
13	Ix_SR1	SilentIntronRegion	0	0.00	7.18	0.00	1.61	8.44	4.22	2.39	0.84	7.81	3.43	0.73	3.21	0.00	1.75	0.00	3.05	1.75	6.48	3.68	3.14	6.75	0.00	1.41	1.86	0.29	0.00	0.00	0.00	0.30
14	E2_Aa	NovelBoundary	0	120.21	482.52	545.46	275.22	157.83	359.89	102.24	143.28	242.77	397.18	478.60	395.96	277.21	374.07	180.18	554.00	356.50	169.53	178.03	120.74	608.39	140.75	312.24	459.38	332.82	271.39	564.07	369.07	409.50
15	ER2a	ExonRegion	0	0.00	0.00	0.87	0.00	0.24	0.58	0.00	0.00	0.00	0.05	0.00	0.27	0.00	1.06	0.00	1.40	3.37	0.00	3.76	0.58	2.51	0.00	0.00	1.66	0.88	0.15	0.00	0.94	0.03
16	E2_Da	NovelBoundary	0	24.54	16.38	12.93	9.92	26.53	61.16	21.86	9.75	73.91	27.84	12.65	22.80	13.28	36.87	60.00	121.25	86.62	13.87	16.18	8.10	28.00	0.00	0.00	45.94	20.84	0.00	1.94	6.25	13.04
17	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
18	Ix	Intron	0	7.41	36.52	3.70	5.95	9.45	36.67	5.85	6.11	49.51	20.35	10.69	19.00	4.29	19.43	27.32	114.55	34.04	21.30	30.03	12.46	22.47	0.50	0.75	35.08	9.09	4.13	1.27	7.66	10.71
19	Ix_AR1	ActiveIntronRegion	0	7.44	36.72	3.72	5.98	9.50	36.87	5.88	6.13	49.77	20.46	10.75	19.10	4.31	19.53	27.47	115.17	34.23	21.42	30.19	12.53	22.60	0.50	0.75	35.26	9.14	4.15	1.27	7.70	10.77
20	Ix	Intron	0	18.42	26.23	5.00	14.73	4.56	30.81	5.65	15.48	30.05	25.08	14.45	28.21	3.87	22.81	27.45	136.07	52.71	22.19	25.07	14.52	25.58	3.70	2.70	27.73	10.41	5.58	6.16	17.05	6.99
21	Ix_AR1	ActiveIntronRegion	0	18.55	26.42	5.03	14.84	4.60	31.04	5.69	15.59	30.27	25.27	14.55	28.42	3.90	22.98	27.63	137.07	53.09	22.36	25.25	14.62	25.77	3.73	2.72	27.93	10.49	5.62	6.20	17.18	7.04
22	Ix	Intron	0	8.20	34.90	2.13	4.57	3.11	14.90	3.86	11.74	10.38	21.17	11.38	13.39	4.55	14.15	26.32	67.38	15.23	25.18	26.48	5.27	10.00	1.15	1.15	15.08	20.05	8.02	2.34	17.67	5.54
23	Ix_AR1	ActiveIntronRegion	0	8.41	35.63	2.16	4.69	3.19	15.28	3.95	12.04	10.63	21.71	11.67	13.69	4.65	14.49	26.93	69.08	15.50	25.82	27.15	5.41	10.24	1.18	1.18	15.44	20.54	8.18	2.40	18.08	5.68
24	Ix	Intron	0	17.28	55.06	4.85	14.57	12.86	64.06	11.35	8.71	47.19	30.11	16.25	35.41	4.38	33.77	24.32	175.03	99.40	31.01	33.31	20.21	39.64	0.48	2.65	28.74	13.81	2.67	1.22	14.50	9.94
25	Ix_AR1	ActiveIntronRegion	0	17.42	55.45	4.87	14.68	12.96	64.54	11.44	8.75	47.56	30.30	16.37	35.67	4.41	34.03	24.51	176.27	100.12	31.19	33.48	20.36	39.94	0.48	2.67	28.94	13.91	2.69	1.23	14.54	10.01
26	Ix_SR1	SilentIntronRegion	0	0.00	7.56	2.24	0.00	0.00	3.71	0.00	3.68	1.46	5.63	1.67	4.08	0.78	1.27	0.00	20.50	9.72	7.91	14.48	1.97	2.00	0.00	0.90	3.23	1.43	0.00	0.00	10.60	0.54
27	Ix	Intron	1	22.66	22.47	16.64	0.00	7.59	18.38	3.76	16.60	12.38	23.80	16.65	25.90	3.63	24.91	12.02	106.11	68.24	19.57	8.94	7.47	11.53	2.24	6.75	12.71	14.67	5.38	0.57	31.43	7.07
28	Ix_SR1	SilentIntronRegion	0	22.92	22.75	16.83	0.00	7.69	18.61	3.81	16.76	12.52	24.09	16.86	26.21	3.67	25.20	12.17	107.37	69.08	19.79	9.05	7.56	11.68	2.27	6.83	12.87	14.85	5.44	0.58	31.80	7.15
29	Ix	Intron	1	28.45	50.65	21.32	17.53	16.21	71.80	4.58	19.29	32.22	55.73	24.94	31.10	3.39	41.23	6.10	158.51	111.34	33.87	36.83	17.35	47.33	2.83	2.21	27.05	22.72	12.08	1.92	32.17	11.09
30	Ix_AR1	ActiveIntronRegion	0	28.65	51.00	21.47	17.65	16.32	72.25	4.60	19.42	32.43	56.11	25.12	31.31	3.42	41.50	6.14	159.58	112.09	34.11	37.03	17.46	47.66	2.85	2.23	27.23	22.87	12.17	1.93	32.39	11.15
31	Ix	Intron	0	3.24	4.56	0.47	1.63	2.13	8.20	1.34	0.80	5.64	5.83	2.74	3.84	0.96	4.10	4.10	12.66	6.15	5.65	12.93	4.24	12.50	0.20	0.48	2.23	2.34	0.70	0.38	2.76	1.46
32	Ix_SR5	SilentIntronRegion	0	4.23	3.19	0.21	1.77	1.51	7.37	1.24	0.68	4.91	6.59	2.42	3.04	0.51	3.98	3.51	14.26	5.70	4.39	11.62	5.73	10.64	0.33	0.11	1.99	3.26	0.19	0.23	1.10	1.63
33	Ix_AR5	ActiveIntronRegion	0	3.20	8.12	0.00	1.22	2.46	7.93	1.68	0.42	6.07	3.11	3.78	3.55	1.95	3.29	2.02	11.51	6.15	8.57	15.58	6.75	14.50	0.00	0.82	0.97	1.30	0.00	0.00	1.69	1.96
34	Ix_SR4	SilentIntronRegion	0	2.68	7.32	0.15	1.62	1.57	6.80	1.31	0.56	5.80	5.26	1.31	5.49	3.13	4.16	4.75	11.21	7.56	5.61	12.50	3.65	11.92	0.49	0.00	1.84	1.74	0.49	0.00	3.86	1.79
35	Ix_AR4	ActiveIntronRegion	0	1.58	6.08	1.85	0.00	1.19	10.02	0.61	0.37	6.59	4.38	1.29	3.23	0.63	5.08	7.37	10.20	7.27	7.54	12.81	1.88	13.11	0.44	0.22	4.10	3.24	0.88	2.02	3.74	2.34
36	Ix_SR3	SilentIntronRegion	0	1.81	1.85	1.03	1.72	2.50	5.90	1.30	2.85	5.81	8.26	2.61	3.83	1.78	3.76	5.73	11.91	6.39	0.92	4.74	3.31	11.28	0.00	1.77	1.64	2.74	2.26	0.00	4.45	1.71
37	Ix_AR3	ActiveIntronRegion	0	2.47	3.37	0.63	1.10	4.47	9.86	1.04	1.03	5.85	5.85	2.93	2.66	0.34	3.24	9.45	7.49	5.89	5.38	11.25	3.62	9.98	0.00	0.25	2.19	1.76	1.25	0.84	2.18	1.71
38	Ix_SR2	SilentIntronRegion	0	3.19	4.10	0.50	1.07	1.80	10.71	1.95	1.02	7.50	6.70	4.15	3.53	0.63	4.28	4.31	15.47	6.74	5.98	13.42	4.63	14.72	0.07	0.61	2.50	2.55	0.63	0.34	2.90	0.83
39	Ix_AR2	ActiveIntronRegion	0	3.37	5.83	0.42	1.78	2.43	6.99	0.50	0.76	5.28	4.61	1.97	4.41	0.43	4.67	2.66	12.06	4.25	6.59	19.10	3.25	14.31	0.00	0.90	1.26	2.36	0.91	0.02	2.62	1.44
40	Ix_SR1	SilentIntronRegion	0	2.29	3.99	0.54	5.75	3.13	9.16	1.81	0.00	3.66	8.73	1.74	3.99	0.21	3.89	2.20	12.72	5.07	5.78	11.20	3.39	13.73	0.00	0.29	3.07	1.60	1.05	1.13	4.46	0.96
41	Ix_AR1	ActiveIntronRegion	0	5.33	1.22	0.17	2.20	2.50	3.80	1.11	0.94	1.90	5.14	2.78	4.87	0.73	3.76	1.68	11.50	5.87	3.61	10.09	3.73	7.11	0.55	0.37	2.86	1.75	0.94	0.00	2.75	1.43
42	E3_Aa	NovelBoundary	0	11.68	3.97	0.00	0.00	0.00	10.55	0.00	0.00	1.31	9.43	6.71	7.74	0.00	8.93	0.00	10.94	6.05	4.62	8.09	0.00	10.91	0.00	0.00	2.81	1.89	3.91	0.00	18.96	0.00
43	ER3a	ExonRegion	0	3.58	2.07	0.80	0.00	1.07	4.91	1.92	0.44	5.85	6.17	1.71	2.94	1.23	4.59	3.51	9.52	3.55	4.13	9.05	3.28	7.11	0.72	1.29	2.55	3.07	1.81	0.00	3.80	1.90
44	E3_Da	NovelBoundary	0	8.08	0.00	0.00	0.00	13.85	10.86	2.63	0.00	9.07	11.46	0.00	4.58	6.50	10.01	0.00	30.68	10.42	13.87	24.05	7.19	20.10	0.00	1.87	0.00	1.74	8.20	0.00	16.94	2.05
45	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.33	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	Ix	Intron	0	1.50	0.00	0.00	0.00	0.00	0.96	1.41	0.00	2.35	0.00	0.83	0.86	0.00	1.27	0.00	0.00	0.00	1.35	2.23	9.63	3.99	0.00	0.00	0.00	1.00	0.00	1.28	3.42	0.94
47	Ix_SR1	SilentIntronRegion	0	1.54	0.00	0.00	0.00	0.00	0.99	1.45	0.00	2.42	0.00	0.85	0.89	0.00	1.30	0.00	0.00	0.00	1.38	2.29	9.90	4.10	0.00	0.00	0.00	1.03	0.00	1.29	3.47	0.96
48	Ix	Intron	0	7.81	7.91	0.87	0.00	10.17	18.60	6.29	0.96	1.46	6.76	6.81	8.66	0.00	13.43	0.00	15.11	4.66	12.36	46.55	2.87	24.50	1.88	0.94	26.87	8.93	1.64	2.86	10.16	0.70
49	Ix_AR1	ActiveIntronRegion	0	7.89	7.99	0.88	0.00	10.27	18.76	6.32	0.97	1.47	6.82	6.87	8.73	0.00	13.56	0.00	15.24	4.71	12.49	47.03	2.90	24.75	1.90	0.95	27.12	9.00	1.65	2.89	10.27	0.71
50	E4_Aa	NovelBoundary	0	191.94	899.41	429.78	285.79	191.73	682.56	124.44	115.71	324.05	699.13	1004.84	649.11	353.98	578.11	278.65	912.32	524.26	619.29	728.32	148.11	1103.16	138.36	476.29	761.03	628.14	450.00	1054.73	597.09	385.83
51	ER4a	ExonRegion	0	0.66	1.72	1.02	0.00	4.50	0.84	0.00	0.00	0.54	2.66	2.19	0.00	0.40	2.43	4.52	3.60	0.47	7.40	4.91	0.00	2.19	0.18	1.67	0.66	0.44	0.97	0.00	0.54	1.23