Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	MIRHG2	Gene	0	5091.90	783.30	1074.62	853.29	122.51	781.31	3886.04	5165.07	1994.54	220.35	797.06	2180.57	235.56	88.23	245.42	694.59	503.73	307.56	241.34	14.93	482.49	230.20	6.22	54.57	368.63	61.17	300.03	5.56	137.04
2	456917	Transcript	0	4315.15	284.04	1102.20	331.15	63.88	333.52	1880.87	5480.48	701.31	95.59	366.44	1169.06	172.24	35.86	96.31	279.69	231.98	142.50	93.33	7.08	168.34	250.20	4.85	17.60	242.18	52.32	129.22	3.18	94.83
3	ER1a	ExonRegion	0	46.45	5.14	28.79	6.90	0.00	2.54	12.08	84.50	10.10	3.49	2.54	5.79	3.08	0.44	0.00	2.75	1.44	2.03	1.54	0.37	0.59	5.00	0.00	0.00	2.02	0.76	3.32	0.00	11.26
4	E1_Da	NovelBoundary	0	33.33	0.00	17.59	9.49	0.00	0.00	0.00	16.97	10.57	0.00	0.00	1.51	0.00	0.00	9.77	0.00	1.40	0.00	8.09	0.00	3.29	13.22	0.00	2.21	5.76	1.59	0.00	0.00	3.30
5	E1a_E2a	KnownJunction	0	124.99	14.45	11.51	0.00	0.00	3.80	8.58	277.00	7.03	0.00	6.39	10.90	4.46	0.00	0.00	3.52	0.00	4.62	0.00	3.72	4.09	15.56	0.00	0.00	3.30	0.00	1.84	0.00	1.58
6	Ix_AR1	ActiveIntronRegion	0	14.92	0.00	0.00	0.00	0.00	0.96	2.82	7.72	4.71	3.03	6.65	0.86	0.00	1.27	0.00	2.98	0.00	4.04	0.00	0.00	0.00	6.30	0.00	0.00	1.00	4.39	0.00	0.00	1.88
7	E2_Aa	NovelBoundary	1	86.06	12.51	96.77	72.04	33.01	14.66	91.03	133.92	26.43	14.54	33.22	79.25	13.53	2.02	0.00	16.68	14.90	9.25	0.00	0.00	4.61	32.09	0.00	0.00	3.60	10.73	16.25	2.29	12.31
8	ER2a	ExonRegion	1	3865.70	133.79	2802.19	745.45	131.73	177.88	2039.94	4612.11	293.15	76.89	267.61	1278.48	179.47	22.46	85.44	272.16	203.06	136.40	57.47	6.64	95.21	245.29	5.55	7.76	189.71	72.38	187.41	7.72	101.38
9	E2_Da	NovelBoundary	0	24.42	0.00	14.05	0.00	0.00	0.00	0.00	6.72	2.47	0.00	0.00	1.51	0.00	1.82	9.97	0.00	2.41	4.62	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	E2a_E3a	KnownJunction	1	1582.87	62.63	1622.46	124.24	84.15	53.48	915.38	3971.22	283.60	29.44	166.97	791.94	113.91	13.89	35.08	55.00	166.86	33.13	24.28	3.89	22.26	136.08	0.00	3.05	59.86	46.18	56.80	2.29	75.57
11	Ix	Intron	0	44.92	5.04	3.50	1.67	0.00	0.00	3.29	6.43	3.66	1.68	0.00	2.43	1.36	1.16	1.28	2.73	1.39	1.79	0.00	0.00	1.00	1.68	0.00	0.00	0.67	1.10	0.85	0.00	0.31
12	Ix_AR1	ActiveIntronRegion	0	45.33	5.09	3.54	1.68	0.00	0.00	3.32	6.49	3.69	1.70	0.00	2.46	1.37	1.17	1.29	2.75	1.40	1.81	0.00	0.00	1.01	1.69	0.00	0.00	0.67	1.11	0.86	0.00	0.32
13	I2	Intron	0	137.08	22.28	16.36	7.59	2.53	17.53	9.28	13.60	30.99	6.49	9.98	24.33	3.69	3.62	1.21	9.44	12.84	8.50	8.61	0.20	22.02	1.73	0.09	1.67	3.34	1.26	4.13	0.32	3.11
14	I2_SR1	SilentIntronRegion	0	137.14	22.29	16.37	7.60	2.53	17.54	9.29	13.60	31.00	6.49	9.98	24.34	3.69	3.63	1.21	9.45	12.85	8.51	8.62	0.20	22.03	1.73	0.09	1.67	3.34	1.26	4.13	0.32	3.11
15	E3_Aa	NovelBoundary	0	103.64	11.54	17.81	8.84	0.00	12.58	5.32	11.74	14.34	7.75	5.31	26.17	0.00	1.00	0.00	2.75	16.59	0.00	0.00	0.00	9.59	4.57	0.00	3.05	6.48	0.00	0.00	0.00	0.00
16	ER3a	ExonRegion	0	6852.54	256.07	1102.72	203.21	47.53	278.74	1650.16	8850.66	521.34	108.71	449.72	1238.15	209.19	40.38	69.32	189.21	231.07	121.27	76.51	10.45	118.17	454.82	5.79	22.37	308.08	61.03	140.92	1.59	111.16
17	E3_Da	NovelBoundary	0	115.49	12.31	15.70	0.00	0.00	12.66	13.04	61.76	22.69	11.90	11.70	12.41	1.91	4.21	0.00	9.33	16.59	4.62	0.00	0.00	9.55	0.00	0.00	3.05	3.07	0.00	0.00	0.00	1.22
18	E3a_E4a	KnownJunction	0	12211.93	565.41	1168.16	260.12	47.01	875.86	3990.73	15168.64	1359.03	189.86	730.44	2340.14	433.12	68.31	190.15	605.41	426.51	336.87	202.09	7.19	350.93	662.31	15.81	23.87	710.54	120.85	167.23	4.58	209.93
19	I3	Intron	0	51.88	17.47	8.44	2.79	0.80	7.33	10.35	20.83	27.78	3.61	3.37	10.41	1.38	1.81	2.20	8.30	17.79	3.23	2.63	0.08	12.36	0.62	0.14	0.77	3.66	0.35	1.67	0.12	1.18
20	I3_SR1	SilentIntronRegion	0	49.29	17.23	7.85	2.88	0.56	7.84	10.27	19.89	26.12	3.76	3.83	10.54	1.40	1.68	2.13	8.50	17.31	3.45	2.88	0.11	13.72	0.62	0.05	0.95	3.13	0.39	1.70	0.16	1.03
21	I3_AR1	ActiveIntronRegion	0	57.44	17.15	5.50	1.89	1.29	3.85	9.80	23.55	30.12	2.47	1.10	8.58	0.77	2.30	2.19	9.67	20.40	3.60	2.95	0.00	10.16	0.71	0.85	0.00	5.98	0.41	1.85	0.00	2.64
22	I3_SR2	SilentIntronRegion	0	60.73	17.87	14.40	4.65	1.94	8.13	10.09	16.98	42.88	4.94	2.31	12.18	2.42	2.62	1.00	5.64	18.68	1.32	0.69	0.00	6.23	0.39	0.00	0.46	2.32	0.00	1.12	0.00	0.29
23	I3_AR2	ActiveIntronRegion	0	74.97	23.32	19.34	0.00	2.41	5.64	14.53	40.98	27.86	1.34	2.53	10.11	1.01	1.63	6.25	4.72	18.52	0.82	0.00	0.00	1.69	0.77	0.00	0.00	10.60	0.00	1.69	0.00	1.71
24	E4_Aa	NovelBoundary	0	74.20	11.63	24.64	0.00	0.00	3.49	11.04	44.69	39.59	9.71	2.88	9.73	0.00	0.00	0.00	0.00	32.12	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.86	0.00	4.97	0.00	1.68
25	ER4a	ExonRegion	0	5521.56	950.76	979.57	978.15	136.73	942.38	4549.23	5399.25	2434.87	260.76	941.39	2518.03	262.47	105.56	294.21	829.77	594.96	363.20	291.41	17.30	587.16	232.37	6.84	66.13	421.76	65.03	347.01	6.06	152.93
26	IG40	Intergenic	0	15.58	16.57	12.07	6.09	1.33	10.37	9.41	16.23	25.37	5.81	13.87	19.74	4.39	3.23	6.53	11.03	19.80	5.14	3.96	0.05	11.68	2.91	0.18	1.86	13.03	1.68	8.77	0.39	6.88
27	IG40_SR1	SilentIntergenicRegion	0	17.84	17.13	13.76	7.05	1.57	11.28	10.27	18.04	25.92	6.15	15.51	22.30	4.80	3.59	6.16	11.76	21.91	5.82	4.55	0.06	12.38	3.25	0.22	1.98	14.15	1.63	9.42	0.43	7.57
28	IG40_AR1	ActiveIntergenicRegion	0	3.79	16.13	3.41	0.99	0.00	5.82	5.27	7.18	26.69	4.49	5.41	6.24	2.22	1.47	6.60	8.34	10.12	1.22	0.88	0.00	9.42	1.24	0.00	1.54	8.10	1.12	5.64	0.21	3.59