Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	GABPA	Gene	0	64.26	206.56	70.30	231.17	136.87	151.06	120.25	76.49	114.93	126.36	169.72	161.50	91.61	123.57	151.16	179.68	119.39	120.56	315.45	146.10	209.38	49.31	86.05	101.53	96.63	69.26	192.65	102.42	124.80
2	354828	Transcript	0	9.44	10.95	11.12	17.48	31.28	11.43	18.13	27.28	7.45	6.55	4.41	7.64	8.58	6.50	3.93	4.80	5.34	16.60	14.52	11.23	13.38	13.31	6.74	3.07	9.51	12.66	7.38	24.77	21.43
3	400075	Transcript	1	44.73	37.42	27.23	5.39	0.83	31.47	7.33	40.68	1.69	33.46	23.82	26.09	18.23	33.49	0.00	51.66	14.03	48.14	44.51	38.92	48.75	33.08	19.96	11.93	27.79	36.41	20.13	49.11	17.20
4	487266	Transcript	0	1.10	0.00	0.73	0.00	0.00	0.00	0.42	0.00	0.00	0.00	0.00	0.00	1.64	1.04	0.00	0.00	0.44	0.00	0.71	0.00	0.64	0.00	0.40	0.00	0.00	0.00	0.00	0.00	0.45
5	ER1a	ExonRegion	0	10.20	5.02	11.18	34.96	35.44	14.46	33.35	52.02	14.90	7.18	4.42	11.27	6.08	5.99	7.87	9.61	7.95	10.08	12.85	19.49	18.65	26.63	7.08	6.14	15.24	21.21	8.60	38.62	21.67
6	E1_Da	NovelBoundary	0	16.87	18.13	44.52	84.34	20.48	36.49	43.03	137.50	16.08	27.80	13.51	66.69	38.56	30.53	44.05	32.82	28.92	19.26	89.02	29.44	25.39	42.93	25.46	19.26	29.55	15.53	11.98	35.27	37.27
7	E1a_E3a	KnownJunction	0	8.67	16.87	11.06	0.00	27.12	8.40	2.92	2.54	0.00	5.91	4.40	4.01	11.08	7.00	0.00	0.00	2.72	23.12	16.18	2.98	8.10	0.00	6.40	0.00	3.79	4.12	6.16	10.92	21.19
8	E2_Aa	NovelBoundary	0	36.16	17.84	38.09	82.39	101.10	22.75	48.40	48.42	12.64	24.65	17.84	50.81	48.31	25.70	15.75	9.79	22.40	0.00	24.28	11.33	50.62	27.08	36.49	13.34	27.69	22.40	25.30	19.68	56.12
9	E2_Ab	NovelBoundary	0	55.80	23.27	32.56	152.28	66.91	31.92	49.89	71.02	13.43	47.26	28.44	53.40	28.98	26.34	25.91	81.70	25.35	36.86	32.15	13.40	47.89	52.56	55.85	13.28	51.45	65.96	21.02	50.64	28.69
10	ER2a	ExonRegion	0	4.29	0.00	1.50	0.00	1.66	3.44	2.02	1.53	0.00	4.09	0.00	1.03	0.00	0.60	0.00	4.64	0.67	2.27	0.00	3.75	7.61	0.00	1.21	0.00	0.95	2.10	0.00	4.62	2.01
11	ER2b	ExonRegion	1	44.81	35.33	78.80	200.58	39.54	29.94	26.41	42.91	2.96	46.78	48.50	48.61	21.06	35.75	10.43	68.34	40.88	47.97	44.23	31.69	45.65	27.91	69.46	6.82	29.99	60.71	39.20	86.42	47.84
12	E2_Da	NovelBoundary	0	66.83	8.34	187.21	362.79	447.42	24.86	93.89	69.08	16.11	25.33	4.49	87.38	49.87	18.90	101.45	39.70	21.79	46.23	89.02	15.05	18.09	78.23	43.78	5.32	26.18	18.88	8.40	32.58	53.38
13	E2a_E3a	KnownJunction	1	85.17	74.85	52.97	10.78	0.00	59.51	12.64	79.82	3.38	62.83	47.64	51.14	36.46	66.38	0.00	98.68	27.39	94.01	89.02	74.10	89.89	66.17	38.71	23.87	54.63	70.72	40.25	93.59	32.39
14	E2a_E4a	KnownJunction	0	0.00	0.00	1.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.28	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2a_E8a	NovelJunction	0	2.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00	0.00	0.00	0.00
16	I2	Intron	0	4.74	8.26	2.14	3.38	4.25	6.32	2.38	2.33	2.47	5.22	2.70	2.57	1.33	6.05	2.80	13.20	7.90	10.44	10.22	1.91	7.91	0.72	0.77	1.01	2.02	1.48	1.35	4.49	0.85
17	I2_SR1	SilentIntronRegion	0	6.97	7.69	3.34	2.86	6.41	6.35	1.72	4.10	2.11	5.19	4.48	3.31	1.92	7.66	1.15	9.57	7.92	11.85	14.58	2.20	10.42	0.62	0.83	1.23	1.79	2.87	0.31	4.74	0.73
18	I2_AR1	ActiveIntronRegion	0	3.15	8.96	1.05	5.61	4.58	7.97	3.78	2.96	3.66	6.01	0.56	1.45	0.60	5.15	0.00	22.72	10.65	10.29	11.94	0.00	10.28	0.85	1.98	0.34	1.14	0.69	3.72	3.54	0.77
19	I2_SR2	SilentIntronRegion	0	4.17	10.12	2.28	1.81	3.94	6.02	2.13	1.92	2.01	5.92	1.44	1.83	1.60	5.52	2.59	12.65	4.85	9.71	9.03	2.22	6.39	0.82	1.09	0.87	1.72	0.81	1.94	4.69	0.90
20	I2_AR2	ActiveIntronRegion	0	7.15	8.13	2.68	5.36	3.62	4.85	3.49	2.01	2.40	6.11	4.32	2.82	0.39	7.58	2.74	7.59	11.11	9.99	7.54	1.02	6.29	1.51	0.22	2.13	2.56	0.78	1.12	8.06	1.03
21	I2_SR3	SilentIntronRegion	0	2.45	6.40	0.85	3.99	2.49	6.86	2.31	0.84	3.04	3.64	2.39	3.06	1.11	4.56	6.14	17.06	9.06	10.19	7.69	2.46	7.02	0.23	0.12	0.68	2.78	1.50	0.94	2.58	0.87
22	E3_Aa	NovelBoundary	0	3.01	16.77	4.21	9.27	7.37	12.62	2.63	0.00	4.14	13.82	4.33	8.76	4.30	8.95	0.00	14.38	15.98	18.75	0.00	3.97	10.83	6.08	0.00	0.00	0.00	3.95	5.07	4.58	2.01
23	I2_AR3	ActiveIntronRegion	0	0.00	2.99	0.00	6.65	0.00	0.50	0.00	0.00	0.00	0.79	0.00	0.00	0.59	1.32	0.00	7.36	2.46	5.46	1.23	0.00	0.00	1.64	0.00	0.00	0.13	0.00	0.00	1.04	0.00
24	ER3a	ExonRegion	1	102.22	124.03	53.14	100.89	47.30	108.84	66.19	106.51	16.87	136.81	132.92	127.26	57.83	118.78	42.41	210.57	90.51	145.47	127.43	116.60	136.01	72.74	122.14	48.54	109.77	114.32	83.81	148.90	110.28
25	E3_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.86	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
26	E3a_E4a	KnownJunction	1	116.26	39.46	18.01	7.98	5.45	51.03	48.17	112.47	22.29	95.31	149.09	148.52	55.31	129.48	17.74	180.46	109.76	80.40	129.48	124.79	76.65	96.41	159.91	53.53	101.87	120.42	116.74	203.36	139.15
27	E3a_E5a	NovelJunction	0	2.36	0.00	0.00	0.00	0.00	6.64	0.00	0.00	0.00	2.04	2.91	4.94	0.00	5.67	0.00	3.52	5.83	9.25	0.00	15.05	3.81	4.67	2.12	0.00	7.73	4.38	0.00	8.04	0.00
28	E4_Aa	NovelBoundary	0	0.00	9.50	0.00	0.00	7.22	1.96	0.00	0.00	1.55	0.00	0.00	1.87	3.38	0.00	0.00	0.00	0.00	0.00	0.00	7.11	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
29	ER4a	ExonRegion	1	111.34	110.94	118.13	141.11	65.86	115.53	50.34	100.92	20.79	134.44	157.21	142.54	79.76	157.79	36.85	147.34	105.98	119.74	113.61	109.67	122.30	83.92	119.68	50.95	137.77	87.29	127.01	139.44	144.63
30	E4_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.96	0.00	0.00	1.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	E4a_E5a	KnownJunction	1	200.02	141.94	236.72	584.74	256.87	144.11	95.66	151.74	43.00	229.13	299.07	228.58	136.33	265.95	42.46	256.58	137.19	228.35	388.44	177.56	178.45	149.26	168.83	89.24	253.19	120.93	199.09	181.48	202.34
32	E4a_E6a	NovelJunction	0	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.19	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.70	0.00	0.00	4.40	3.30
33	E5_Aa	NovelBoundary	0	3.01	16.00	0.00	0.00	0.00	1.57	0.00	0.00	1.31	1.84	0.00	0.00	0.00	0.00	0.00	3.82	2.30	0.00	16.18	0.00	3.45	0.00	0.00	0.00	0.00	0.00	0.00	5.80	1.75
34	ER5a	ExonRegion	1	134.03	103.53	182.32	439.02	142.82	125.22	51.60	93.33	25.87	145.46	204.12	202.33	102.18	246.49	23.72	181.23	161.81	113.31	121.13	106.38	132.40	95.50	126.88	63.34	180.35	76.03	131.94	145.71	129.72
35	E5_Da	NovelBoundary	0	0.00	9.40	0.00	0.00	0.00	1.88	0.00	0.00	1.89	0.00	4.18	0.00	0.00	1.20	0.00	3.75	2.41	4.62	16.18	0.00	5.41	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
36	E5a_E6a	KnownJunction	1	195.30	188.67	174.65	378.54	226.80	225.45	84.79	142.58	28.75	206.32	276.04	228.28	136.71	326.01	68.17	356.18	180.91	246.71	258.96	215.93	252.78	139.05	198.77	120.41	276.83	121.70	185.17	229.96	172.33
37	I5_SR1	SilentIntronRegion	0	1.88	1.20	0.34	1.47	0.72	2.13	0.30	0.54	1.45	1.10	0.91	1.25	0.00	1.18	0.86	4.52	1.27	3.02	4.77	2.25	2.76	0.05	0.11	0.19	0.63	0.28	0.27	0.91	0.55
38	I5_AR1	ActiveIntronRegion	0	1.13	3.39	0.00	0.00	0.00	1.45	0.00	0.97	0.00	0.76	0.00	0.00	0.00	0.95	4.85	2.61	2.35	4.05	1.68	4.35	0.75	0.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	E6_Aa	NovelBoundary	0	10.50	8.73	1.05	0.00	0.00	3.26	2.57	0.00	0.00	5.59	0.00	1.14	0.00	0.89	0.00	11.47	1.15	0.00	0.00	7.77	5.50	0.00	0.00	0.00	0.00	1.85	0.00	0.00	0.00
40	ER6a	ExonRegion	1	67.98	72.15	104.19	167.54	82.28	69.44	34.33	62.09	10.69	90.77	115.25	109.17	65.51	108.55	10.43	107.64	92.59	58.32	77.84	57.47	84.88	49.97	81.00	30.02	106.31	60.81	71.84	84.46	85.33
41	E6_Da	KnownBoundary	0	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.91	0.00	0.00	1.24	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
42	E6a_E7a	KnownJunction	1	92.25	85.51	166.41	308.87	121.43	73.24	9.15	127.55	10.41	37.19	58.49	54.52	46.87	67.62	19.93	51.71	59.60	27.74	40.46	69.38	83.31	73.90	50.48	24.40	82.25	43.39	74.60	41.52	51.14
43	ER6b	ExonRegion	0	2.20	0.00	0.00	0.00	0.00	0.00	0.85	0.00	0.00	0.00	0.00	0.00	0.00	0.71	0.00	0.00	0.88	0.00	1.43	0.00	1.28	0.00	0.81	0.00	0.00	0.00	0.00	0.00	0.89
44	ER7a	ExonRegion	1	77.45	67.08	213.84	306.04	126.25	61.97	33.86	63.53	14.04	79.22	104.84	77.21	46.62	94.16	15.62	87.67	59.08	57.09	98.08	65.67	87.64	51.57	88.17	40.68	80.73	51.52	118.98	82.11	68.12
45	E7a_E8a	KnownJunction	1	56.04	136.99	201.46	374.23	103.60	90.36	52.24	36.63	18.97	113.53	187.43	137.05	69.04	106.04	8.37	124.31	112.55	75.65	97.11	44.00	150.25	28.54	105.59	32.90	100.36	61.54	117.24	110.35	117.59
46	E8_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	0.00	0.00	1.24	0.00	0.00	4.05	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00
47	ER8a	ExonRegion	0	53.51	92.04	142.94	265.15	100.55	95.39	72.57	82.71	15.85	148.66	230.81	156.15	56.87	103.76	14.42	108.54	96.22	87.28	107.78	84.58	152.68	42.56	109.70	34.30	95.50	78.70	163.79	104.78	114.90
48	E8_Da	NovelBoundary	0	0.00	0.00	1.54	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.26	0.00	0.00	0.00	2.05	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
49	E8a_E9a	KnownJunction	1	76.86	83.18	104.69	168.46	107.29	96.76	88.85	121.03	22.69	161.54	291.99	172.98	63.63	119.03	34.08	138.69	84.27	157.97	129.48	86.67	174.72	58.10	103.23	42.47	107.48	85.48	128.87	145.35	139.48
50	E9_Aa	NovelBoundary	0	3.01	4.85	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00
51	ER9a	ExonRegion	1	152.16	221.51	236.34	388.45	182.41	241.82	128.51	179.04	47.17	274.56	362.21	238.22	123.50	221.73	66.73	268.11	153.26	168.47	310.10	162.94	318.44	114.76	204.44	84.03	204.48	191.69	331.46	243.87	203.85
52	E9_Da	NovelBoundary	0	4.84	4.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.92	4.84	0.00	0.00	0.00	0.00	7.65	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E9a_E10a	KnownJunction	1	137.44	224.34	329.65	361.28	149.29	275.98	148.82	281.38	60.78	304.39	520.80	303.76	103.33	283.16	61.99	244.26	228.24	91.19	145.66	163.08	402.79	136.08	232.02	85.00	205.45	145.99	348.08	279.56	223.37
54	E10_Aa	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.60	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
55	ER10a	ExonRegion	1	174.73	290.54	303.10	465.96	199.13	279.31	157.96	222.17	62.98	315.64	472.18	303.08	169.03	309.89	93.24	316.35	248.19	218.53	363.12	177.10	346.16	148.37	256.21	107.38	241.45	244.69	366.62	337.22	289.32
56	E10_Da	NovelBoundary	0	0.00	0.00	0.00	0.00	0.00	1.65	0.00	0.00	0.00	4.07	0.00	1.54	0.00	2.97	0.00	11.47	2.36	0.00	0.00	0.00	6.38	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.35
57	E10a_E11a	KnownJunction	1	139.09	354.84	197.38	489.62	231.08	234.04	164.15	270.28	70.77	450.91	563.25	286.32	181.29	290.94	65.97	334.53	248.89	324.54	477.01	190.37	297.02	186.59	289.98	91.94	272.24	291.04	455.73	444.19	294.22
58	I10	Intron	0	1.37	4.88	0.18	1.53	1.04	3.01	0.70	0.49	1.30	2.04	0.70	1.48	0.05	2.45	2.23	7.07	3.42	1.98	3.66	0.96	2.85	0.00	0.24	0.63	1.14	0.04	1.32	0.74	0.62
59	I10_SR1	SilentIntronRegion	0	1.27	2.64	0.12	0.00	1.03	4.25	0.43	0.26	0.59	2.18	0.90	0.71	0.13	1.52	1.61	5.34	2.26	2.38	1.86	1.02	3.24	0.00	0.37	0.30	1.10	0.11	0.26	0.75	0.66
60	I10_AR1	ActiveIntronRegion	0	1.53	5.93	0.00	3.85	0.75	1.05	0.93	0.71	2.10	2.26	0.93	2.15	0.00	2.02	2.29	8.54	4.47	2.19	5.08	0.79	1.63	0.00	0.01	0.83	1.44	0.00	2.95	0.52	0.52
61	I10_SR2	SilentIntronRegion	0	1.94	8.04	0.11	0.00	1.22	3.44	0.81	0.31	0.42	2.47	0.20	1.30	0.00	3.00	2.09	9.32	2.53	1.38	2.21	1.10	4.42	0.00	0.31	1.11	0.73	0.00	1.26	0.66	0.61
62	I10_AR2	ActiveIntronRegion	0	0.49	4.85	1.00	1.63	1.71	4.21	0.76	0.84	2.43	0.39	0.00	2.25	0.00	6.01	4.25	5.37	5.29	0.88	7.27	1.05	3.20	0.00	0.41	0.49	0.96	0.00	0.00	1.48	0.83
63	E11_Aa	NovelBoundary	0	0.00	4.46	0.00	0.00	0.00	5.22	2.57	5.08	5.06	0.00	0.00	1.42	0.00	3.57	0.00	6.58	10.08	4.62	16.18	0.00	7.54	2.48	0.00	2.63	3.60	0.00	0.00	4.40	2.71
64	ER11a	ExonRegion	0	59.89	275.22	45.17	252.10	166.85	186.94	157.64	71.54	168.91	139.47	188.82	193.39	111.61	133.99	222.51	217.23	141.43	145.30	433.84	188.53	265.44	43.93	83.40	138.66	98.98	63.50	239.71	95.59	141.49
65	IG43_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.26	0.00	0.00	0.00	0.00	0.00	4.53	0.00	0.00	0.00	0.00	0.00	0.00	1.57	0.00	0.00	1.34