Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP5-1103G7.1	Gene	0	44.73	21.92	39.06	53.07	73.45	31.25	90.12	41.74	30.38	24.41	44.33	50.73	43.79	39.58	84.42	29.39	25.74	11.00	21.41	21.93	22.20	16.81	29.62	24.32	40.57	33.25	25.94	77.91	28.67
2	442637	Transcript	1	6.89	1.26	13.72	28.95	35.58	3.36	21.25	21.08	9.02	9.61	3.43	22.69	1.34	16.18	8.48	3.66	20.46	2.88	1.96	2.68	2.62	1.80	7.83	3.63	9.17	11.40	12.53	81.39	15.11
3	414676	Transcript	0	4.13	3.57	10.09	15.06	9.80	10.09	14.52	0.88	4.04	2.00	8.31	2.04	8.14	5.65	9.78	4.24	3.25	0.41	2.26	3.20	5.50	2.11	5.86	1.90	5.91	3.55	3.48	5.95	3.73
4	ER1a	ExonRegion	1	11.35	2.52	12.94	37.85	45.51	6.72	30.14	21.95	10.17	12.23	2.49	19.94	2.67	9.67	8.78	3.73	15.61	5.76	3.91	2.05	5.24	3.59	11.38	1.76	8.40	15.68	13.58	113.35	15.63
5	E1_Da	NovelBoundary	0	2.65	0.00	1.40	0.00	0.00	3.38	0.00	4.28	0.00	7.15	0.00	7.77	0.00	0.00	0.00	10.10	23.16	0.00	0.00	0.00	0.00	0.00	0.00	4.90	0.00	1.93	1.99	5.62	0.00
6	E1a_E3a	KnownJunction	1	2.42	0.00	14.50	20.06	25.64	0.00	12.36	20.20	7.86	6.99	4.37	25.45	0.00	22.69	8.17	3.60	25.30	0.00	0.00	3.31	0.00	0.00	4.28	5.50	9.93	7.12	11.48	49.42	14.59
7	E1a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	2.63	1.84	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.19	0.00	2.02	3.53
8	Ix	Intron	0	4.20	0.63	0.65	0.00	3.35	3.09	0.59	1.26	0.66	2.12	0.47	2.11	0.50	0.98	3.78	0.97	4.53	0.94	0.63	0.00	0.98	0.71	1.95	4.00	1.40	0.00	1.08	3.19	1.18
9	Ix_AR1	ActiveIntronRegion	0	4.21	0.63	0.66	0.00	3.36	3.11	0.59	1.27	0.66	2.13	0.47	2.12	0.51	0.98	3.80	0.98	4.55	0.95	0.63	0.00	0.98	0.71	1.95	4.02	1.40	0.00	1.08	3.20	1.18
10	Ix	Intron	0	3.38	0.56	0.88	0.00	0.86	1.93	2.12	2.58	0.49	1.52	0.21	1.95	0.00	1.82	4.20	1.30	4.45	2.08	0.00	0.00	1.75	0.32	0.00	1.89	0.50	0.00	0.64	1.14	0.71
11	Ix_AR2	ActiveIntronRegion	0	1.68	1.26	0.00	0.00	0.00	1.63	1.88	1.41	0.02	2.09	0.00	1.09	0.00	2.15	3.92	0.80	5.76	1.64	0.00	0.00	1.57	0.51	0.00	0.50	0.31	0.00	0.18	1.25	0.00
12	Ix_AR1	ActiveIntronRegion	0	2.41	3.28	0.00	0.00	4.36	5.50	8.06	2.30	1.12	4.24	0.00	4.64	0.00	3.34	3.50	2.53	11.33	3.58	0.00	0.00	2.85	1.80	0.00	6.45	1.43	0.00	2.86	0.92	1.09
13	Ix_SR1	SilentIntronRegion	0	3.97	0.15	1.21	0.00	0.85	1.75	1.73	2.96	0.58	1.15	0.29	2.00	0.00	1.63	4.39	1.36	3.57	2.12	0.00	0.00	1.73	0.14	0.00	1.93	0.49	0.00	0.60	1.14	0.89
14	I1	Intron	0	1.85	1.87	0.85	1.26	1.36	2.45	0.97	2.04	3.77	3.37	1.16	3.24	1.48	1.84	4.48	1.15	7.33	0.84	1.12	0.23	1.29	0.58	0.55	2.95	1.13	0.62	0.86	4.45	1.55
15	I1_AR1	ActiveIntronRegion	0	3.77	0.00	0.68	0.97	1.32	3.53	1.36	5.48	2.35	4.69	1.77	6.84	3.15	2.51	7.34	0.34	13.13	0.78	0.86	0.00	0.96	1.22	0.24	1.75	0.97	1.06	0.74	6.62	0.72
16	I1_SR1	SilentIntronRegion	0	1.61	2.10	0.88	1.29	1.36	2.32	0.92	1.63	3.95	3.22	1.09	2.81	1.27	1.76	4.14	1.24	6.63	0.85	1.15	0.26	1.33	0.50	0.59	3.10	1.15	0.57	0.87	4.19	1.65
17	E2_Aa	NovelBoundary	1	84.41	8.73	132.65	398.60	427.67	40.86	112.66	42.05	16.38	12.86	99.68	40.66	54.42	28.91	248.35	82.31	14.86	23.12	16.18	22.49	16.08	26.89	32.11	24.11	70.16	76.34	25.74	13.43	32.09
18	ER2a	ExonRegion	0	1.61	1.98	14.09	17.53	16.44	1.76	15.48	0.06	3.85	1.52	3.92	1.36	5.78	3.47	8.07	7.92	6.61	1.23	3.60	4.11	0.89	2.42	7.74	0.00	4.30	5.68	2.03	10.10	6.96
19	E2a_E3a	KnownJunction	0	2.95	8.73	5.36	25.45	0.00	1.57	10.24	0.00	4.84	1.52	0.00	0.00	9.62	5.18	0.00	0.00	0.92	0.00	0.00	0.00	0.00	2.48	9.11	0.00	1.93	1.97	0.00	0.00	0.00
20	E2a_E4a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.78
21	I2_AR1	ActiveIntronRegion	0	0.71	0.00	0.00	0.00	0.00	0.00	0.27	0.49	0.15	1.92	0.32	0.74	0.26	0.42	0.00	1.23	2.69	0.00	1.28	0.52	0.95	0.00	0.24	0.00	0.00	0.42	0.24	0.87	0.21
22	I2_AR2	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.63	2.50	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34
23	I2_AR3	ActiveIntronRegion	0	2.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.53	2.00	0.00	0.00	2.81	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.34
24	I2_AR4	ActiveIntronRegion	0	1.07	1.21	1.05	0.00	1.22	0.34	0.02	0.00	2.46	1.48	0.45	0.85	0.24	0.79	0.00	0.62	1.12	0.00	0.40	0.00	0.89	0.00	0.00	0.27	0.72	0.00	0.00	1.07	0.00
25	I2_SR2	SilentIntronRegion	0	0.00	0.00	0.87	0.00	1.27	2.15	1.57	0.00	1.46	1.88	0.93	2.08	1.35	0.82	1.20	0.00	2.33	0.50	0.00	0.00	0.37	0.47	0.00	0.56	0.37	0.41	0.00	2.12	1.22
26	E3_Aa	NovelBoundary	0	5.01	0.00	4.24	8.41	5.60	1.88	5.61	4.58	0.00	5.47	0.00	1.54	6.18	0.95	17.74	0.00	4.43	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.83	3.27
27	ER3a	ExonRegion	0	63.37	19.20	20.27	24.93	46.37	37.52	110.78	61.06	35.03	29.03	53.35	57.98	57.61	50.53	118.95	41.77	30.38	10.80	18.78	27.13	24.02	23.36	38.07	23.66	54.87	46.76	22.70	79.25	37.79
28	E3_Da	NovelBoundary	0	0.00	3.68	0.00	0.00	0.00	0.00	0.00	0.00	7.28	8.87	0.00	0.00	1.34	2.15	19.13	3.14	8.73	0.00	0.00	3.80	3.41	0.00	0.00	7.90	0.00	0.00	0.00	2.07	2.05
29	E3a_E4a	KnownJunction	1	34.80	24.43	48.56	28.26	53.94	31.92	79.41	47.92	42.54	20.77	44.57	88.19	55.73	60.60	105.64	32.82	34.53	14.26	16.18	18.69	15.72	21.98	44.13	10.77	32.16	63.47	46.02	147.51	33.24
30	E4_Aa	NovelBoundary	0	8.85	8.24	3.46	0.00	0.00	9.02	6.81	0.00	5.94	5.35	2.78	6.11	6.75	1.99	25.31	6.73	11.43	4.62	0.00	3.89	9.99	0.00	4.78	3.05	8.33	7.04	0.00	13.84	9.77
31	ER4a	ExonRegion	0	56.79	33.56	60.63	78.71	107.06	41.75	116.85	49.54	40.75	31.56	61.60	68.54	58.88	52.18	109.64	36.88	31.64	15.06	31.89	29.70	30.86	21.42	36.98	36.74	52.35	39.54	36.47	84.66	34.06
32	ER4b	ExonRegion	0	7.82	0.00	10.83	2.19	12.95	26.94	17.84	2.58	3.43	2.96	21.01	4.76	9.03	8.30	21.28	4.81	2.20	0.00	3.17	5.48	15.62	1.44	0.72	5.70	11.51	2.99	8.43	7.74	4.23
33	IG10_AR6	ActiveIntergenicRegion	0	3.27	24.31	5.69	11.07	11.34	22.47	21.47	7.42	15.42	9.81	9.95	9.47	15.21	7.78	27.36	8.63	7.14	3.04	13.87	1.90	17.01	1.96	7.83	4.67	9.26	5.33	5.68	17.42	5.81
34	IG10_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	1.82	0.00	0.00	0.00	0.59	0.00	0.00	0.46	0.00	1.08	0.00	0.00	1.12	0.00	0.00	0.00	0.51	0.00	0.00	0.00	0.00	0.30	0.00	3.13	0.00