Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	PCNA	Gene	0	1878.32	1483.52	955.70	3656.65	3141.71	1570.36	2684.70	1605.78	1464.21	1291.18	1645.16	2993.47	2485.78	605.40	1209.49	858.02	684.10	1126.46	3617.24	691.40	1228.72	1434.81	2134.61	717.18	968.18	1053.72	2105.96	891.37	1316.76
2	379160	Transcript	0	14.92	3.65	57.79	190.27	174.08	17.92	17.40	11.77	6.05	29.59	8.03	66.21	27.67	11.56	14.11	25.55	22.56	4.79	11.60	4.32	19.30	20.18	22.81	2.56	19.64	27.03	6.40	28.31	24.99
3	379143	Transcript	0	389.71	161.92	742.05	4085.90	3799.55	394.59	936.97	464.46	164.72	307.36	416.69	1470.67	772.72	113.16	280.48	312.11	279.35	526.83	627.85	168.19	313.50	493.68	764.86	66.23	117.33	727.46	640.39	844.75	562.48
4	ER1a	ExonRegion	0	12.68	7.29	42.53	143.72	193.42	22.15	21.46	16.13	8.44	26.35	11.54	52.46	28.02	13.06	9.88	33.50	19.65	9.58	7.02	4.51	19.78	27.00	18.20	2.07	13.67	24.54	8.38	14.62	9.53
5	E1a_E2b	KnownJunction	1	17.16	0.00	73.05	236.83	154.74	13.70	13.33	7.42	3.65	32.84	4.52	79.97	27.32	10.06	18.34	17.59	25.48	0.00	16.18	4.13	18.81	13.37	27.43	3.05	25.61	29.52	4.42	42.01	40.44
6	E1a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.29	0.00
7	I1_AR2	ActiveIntronRegion	0	2.57	1.66	0.86	5.54	0.00	1.19	5.07	0.95	5.02	1.74	0.73	1.02	0.93	0.70	0.00	2.38	1.46	0.57	1.55	3.31	0.00	1.47	0.47	0.00	1.10	1.62	2.36	1.09	2.24
8	I1_AR3	ActiveIntronRegion	0	2.09	1.90	2.40	1.56	2.04	2.58	4.98	0.54	3.63	1.80	1.53	2.52	0.68	1.59	0.00	1.26	0.95	1.31	0.05	1.84	0.42	2.75	2.13	0.00	2.14	1.39	0.90	2.36	2.54
9	I1_AR4	ActiveIntronRegion	0	0.00	0.00	3.37	7.31	14.94	1.37	2.02	0.00	0.67	1.16	0.95	1.24	1.30	0.82	0.00	0.00	0.00	2.73	0.00	0.00	0.00	3.61	0.00	0.00	2.86	0.00	1.83	1.63	0.27
10	I1_SR2	SilentIntronRegion	0	1.55	0.00	1.68	11.55	3.02	0.80	0.82	0.00	0.67	0.82	0.00	1.74	0.15	0.80	0.00	0.00	0.00	0.47	0.00	0.00	0.00	0.55	0.00	0.00	1.45	0.00	0.14	1.35	0.00
11	I1_SR3	SilentIntronRegion	0	1.42	0.00	0.20	3.53	4.45	1.20	3.67	1.68	0.00	0.00	0.98	0.35	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.81	0.00	1.03	0.00	0.00	1.15	0.00	0.00	0.00	0.00
12	E2_Aa	NovelBoundary	0	0.00	0.00	2.79	0.00	0.00	0.00	5.26	0.00	0.00	0.00	0.00	1.63	3.34	0.00	0.00	0.00	1.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00
13	ER2a	ExonRegion	0	389.71	161.92	742.05	4085.90	3799.55	394.59	936.97	464.46	164.72	307.36	416.69	1470.67	772.72	113.16	280.48	312.11	279.35	526.83	627.85	168.19	313.50	493.68	764.86	66.23	117.33	727.46	640.39	844.75	562.48
14	E2_Ab	KnownBoundary	0	1917.20	882.35	3581.72	22140.58	23535.22	2255.75	4764.73	2238.47	893.75	1753.77	2688.05	7600.34	3880.97	616.73	1387.86	1674.94	1372.37	2437.61	3519.10	1001.49	1807.53	2346.51	4274.82	412.97	773.65	4746.69	4394.35	4010.54	3243.34
15	ER2b	ExonRegion	0	1855.55	648.46	1401.90	2910.13	3137.41	981.45	2074.54	1955.68	586.78	936.16	1095.15	3058.61	2253.09	472.33	637.47	647.22	733.96	971.74	1534.65	578.09	758.71	1601.95	2057.78	455.00	694.88	1820.05	1471.03	1391.78	1551.54
16	E2_Da	NovelBoundary	0	48.72	0.00	14.72	92.10	21.22	10.24	7.72	27.02	6.09	2.04	1.36	6.57	1.50	9.37	8.37	3.37	6.21	18.49	8.09	7.36	8.46	2.33	0.00	5.98	1.74	0.00	0.00	7.77	1.65
17	E2a_E3a	KnownJunction	0	2811.42	1112.31	3550.27	7411.18	6303.37	1142.74	2218.79	2658.59	893.05	1173.96	1218.88	2662.54	2299.48	617.70	842.32	713.20	609.71	1299.07	2911.49	900.26	957.35	2071.29	2262.68	739.86	1127.16	1028.22	1416.28	790.57	1174.03
18	E2a_E5a	NovelJunction	0	0.00	0.00	0.00	0.00	6.63	0.00	0.00	0.00	0.00	1.56	0.00	0.00	0.00	0.00	0.00	0.00	1.28	0.00	8.09	0.00	0.00	2.09	2.31	0.00	1.78	0.00	0.00	0.00	0.00
19	I2	Intron	0	50.92	10.76	10.17	42.42	41.18	23.85	30.07	32.84	7.41	16.27	5.50	16.10	4.30	10.49	14.78	15.35	12.22	38.30	53.88	14.57	19.55	4.24	2.35	6.28	6.03	7.26	5.49	8.46	3.85
20	I2_AR1	ActiveIntronRegion	0	51.07	10.79	10.20	42.56	41.31	23.93	30.17	32.95	7.44	16.33	5.52	16.15	4.32	10.52	14.83	15.40	12.26	38.42	54.05	14.61	19.61	4.25	2.35	6.30	6.05	7.28	5.51	8.49	3.86
21	E3_Aa	NovelBoundary	0	52.56	4.85	5.48	44.86	39.50	30.35	56.59	35.73	14.19	20.45	3.86	24.82	0.00	20.32	9.57	24.71	26.31	20.04	145.66	15.05	33.37	15.51	7.54	5.32	7.01	2.10	4.72	10.02	7.49
22	ER3a	ExonRegion	0	3689.44	1740.67	2110.07	9619.80	8769.05	1586.54	3260.74	3324.62	1502.02	1817.94	1898.47	4019.50	3259.68	926.50	1217.56	1120.44	845.30	1729.57	4103.73	1081.94	1290.03	2769.32	3391.30	1067.93	1740.20	1406.62	2140.30	1048.23	1715.27
23	E3_Da	NovelBoundary	0	83.82	16.77	14.72	28.47	90.49	29.27	58.87	33.39	22.41	28.40	19.39	41.02	12.26	12.94	43.45	48.58	25.82	60.88	89.02	33.25	20.38	14.39	6.06	20.52	3.56	5.19	6.11	7.95	3.90
24	E3a_E4a	KnownJunction	0	3056.21	1679.86	971.46	7834.59	5667.46	1254.04	3036.05	2198.21	1721.94	1571.70	1786.88	3981.34	3111.16	855.49	1586.78	1313.71	856.66	1739.33	4367.46	860.07	982.62	2151.71	3232.06	867.50	1494.12	1183.19	1993.32	945.94	1666.65
25	E3a_E5a	NovelJunction	0	8.38	9.60	2.47	0.00	0.00	0.00	7.27	2.24	0.00	1.92	0.00	1.42	3.34	6.98	0.00	3.82	0.00	10.02	32.37	0.00	1.76	0.00	4.33	0.00	1.89	0.00	0.00	4.49	0.00
26	I3	Intron	0	36.04	17.07	0.00	44.20	19.16	16.95	18.05	15.48	13.84	11.34	4.00	13.16	2.91	5.84	15.51	22.47	7.53	26.09	102.05	7.29	12.79	6.06	3.04	9.64	5.61	2.64	7.19	8.22	1.50
27	I3_AR1	ActiveIntronRegion	0	36.85	17.46	0.00	45.19	19.59	17.33	18.46	15.83	14.15	11.58	4.09	13.45	2.98	5.97	15.86	22.98	7.65	26.68	104.30	7.45	13.06	6.20	3.11	9.84	5.73	2.70	7.35	8.41	1.54
28	E4_Aa	NovelBoundary	0	60.17	39.07	6.28	60.61	52.91	24.02	58.30	69.27	52.44	19.33	8.79	36.63	12.32	14.69	27.11	32.05	36.17	51.63	218.50	17.20	26.35	11.13	4.83	19.44	12.12	1.89	9.74	12.58	3.60
29	ER4a	ExonRegion	0	3338.87	2105.53	1109.65	5681.72	3488.11	1696.41	3178.63	2632.96	1848.77	1988.27	2348.10	4301.05	3642.32	962.62	1439.11	1268.38	962.79	1688.87	5251.16	1073.92	1381.77	2389.45	3567.67	1032.49	1764.30	1359.02	2897.38	1133.88	1788.40
30	E4_Da	NovelBoundary	1	24.30	4.85	9.39	0.00	6.34	25.36	75.92	20.55	34.50	36.19	5.22	39.25	2.90	16.00	24.91	51.25	19.70	18.49	64.74	33.74	21.34	4.96	2.51	8.43	1.93	1.67	0.00	6.29	3.50
31	E4a_E5a	KnownJunction	0	3479.61	2413.68	1409.81	5186.53	3306.87	1914.81	3259.70	2806.20	2244.26	1910.20	2180.67	4555.58	4123.97	1002.72	1398.63	1183.51	1097.82	1923.88	5872.21	1260.34	1636.74	2625.87	3501.65	1225.50	1745.18	1405.87	3121.40	1100.87	2016.50
32	I4	Intron	1	30.76	28.41	3.90	52.23	23.49	30.95	40.24	18.11	29.72	11.99	7.11	19.94	3.11	8.51	24.93	24.83	15.01	36.82	87.75	16.82	17.87	2.36	1.84	18.02	5.00	1.49	2.40	3.80	3.16
33	I4_AR1	ActiveIntronRegion	1	29.79	28.05	3.68	49.30	21.54	32.61	35.72	17.89	27.74	11.45	6.78	18.62	2.78	8.04	22.92	22.71	14.99	37.49	83.97	17.17	17.80	2.25	2.36	15.77	4.47	1.60	1.49	3.62	2.03
34	I4_AR2	ActiveIntronRegion	1	43.48	25.34	10.10	85.66	46.97	35.74	71.13	22.88	46.06	10.73	9.18	22.44	7.79	9.07	33.60	34.35	23.18	38.60	77.59	19.67	12.02	0.77	1.81	31.04	8.58	1.57	7.33	10.71	8.05
35	I4_AR3	ActiveIntronRegion	1	32.34	29.60	3.96	57.18	26.69	26.76	49.21	18.34	33.45	13.53	7.85	23.09	3.57	9.64	29.49	29.47	14.54	35.42	98.14	15.88	18.69	2.77	0.61	22.58	5.97	1.22	4.23	3.73	5.55
36	E5_Aa	NovelBoundary	0	33.03	25.98	8.60	57.59	19.60	14.85	46.74	13.79	32.71	15.18	5.95	21.29	5.83	8.64	58.20	46.13	17.60	70.12	89.02	30.35	13.60	3.94	2.02	22.91	5.08	0.00	8.25	3.82	5.58
37	ER5a	ExonRegion	0	3427.66	2530.46	1449.99	4469.91	3703.08	2311.03	4152.59	2719.67	2572.51	2317.81	2890.36	5048.60	4327.64	1083.14	1731.42	1417.58	1102.42	1859.63	5904.93	1119.04	1938.34	2585.54	4020.24	1325.24	2029.69	1465.89	3923.55	1309.80	2169.73
38	E5_Da	NovelBoundary	0	5.07	4.85	2.69	10.78	0.00	15.23	0.00	5.03	0.00	6.11	1.17	1.42	0.00	4.34	9.97	6.88	6.48	50.99	40.46	0.00	1.64	2.04	0.00	7.96	1.78	2.19	0.00	0.00	2.05
39	E5a_E6a	KnownJunction	0	3102.81	2734.58	1061.30	4704.46	3618.56	2049.33	4347.81	2216.22	2615.54	2306.54	3299.74	5450.59	4298.22	1106.66	1835.14	1495.32	1199.83	2071.45	7417.64	888.93	1948.16	2365.52	3779.42	1405.01	1607.43	1233.95	4529.48	1140.32	2102.53
40	I5	Intron	0	8.27	8.78	1.31	3.58	5.23	7.56	4.03	2.90	3.56	2.99	2.89	4.31	1.02	2.71	4.53	8.10	3.31	11.17	12.55	2.31	5.60	0.52	0.52	2.46	1.12	1.57	0.13	1.16	0.29
41	I5_AR1	ActiveIntronRegion	0	1.37	7.10	0.00	0.00	1.00	0.16	0.00	0.00	0.94	0.00	0.00	1.53	0.62	0.87	3.58	2.23	0.48	10.37	12.31	0.00	0.00	0.00	0.00	0.95	0.00	1.51	0.00	0.00	0.05
42	I5_SR1	SilentIntronRegion	0	8.91	9.24	1.42	3.88	5.63	8.19	4.37	3.14	3.82	3.24	3.13	4.62	1.08	2.91	4.78	8.69	3.56	11.71	13.13	2.50	6.07	0.56	0.56	2.63	1.22	1.65	0.14	1.26	0.31
43	E6_Aa	NovelBoundary	0	5.13	18.23	0.00	0.00	26.82	8.98	10.36	0.00	9.29	1.80	6.14	12.92	4.52	3.41	9.37	9.33	2.16	46.23	48.55	6.86	6.14	0.00	0.00	5.92	3.75	0.00	0.00	1.98	0.00
44	ER6a	ExonRegion	0	2934.07	2744.86	1188.04	4151.29	3119.61	2572.80	4508.48	2352.08	2888.61	2482.03	3019.45	4901.09	4251.23	1080.12	1950.86	1473.84	1121.44	1644.52	6106.66	999.24	2132.61	2221.41	3572.61	1360.10	1813.49	1260.23	4002.83	1148.73	2020.25
45	E6_Da	NovelBoundary	0	5.19	4.75	0.00	0.00	0.00	10.24	4.63	2.39	9.56	6.55	0.00	7.26	0.00	0.86	27.90	9.26	4.59	5.39	8.09	0.00	3.29	0.00	0.00	0.00	3.03	0.00	8.95	0.00	1.25
46	E6a_E7a	KnownJunction	0	2614.47	3082.64	1257.38	5706.14	4023.39	2463.62	4275.09	1797.54	2937.78	2168.05	2649.02	4087.18	4340.03	1053.97	2291.58	1417.06	1001.23	1860.44	7450.69	1143.65	2091.15	2104.84	2754.54	1458.78	1697.18	958.23	3280.78	934.66	2077.57
47	I6	Intron	0	1.27	5.73	0.00	4.25	0.00	3.26	2.39	1.09	4.98	1.71	0.00	4.01	3.44	1.34	3.26	2.94	0.89	4.57	13.26	0.00	5.08	0.00	1.07	1.28	0.85	0.00	0.00	2.90	0.00
48	I6_SR1	SilentIntronRegion	0	0.00	4.69	0.00	5.22	0.00	1.57	1.34	1.84	4.17	1.03	0.00	3.53	3.46	1.43	0.00	2.77	0.81	2.08	14.44	0.00	2.85	0.00	1.29	0.31	0.95	0.00	0.00	1.47	0.00
49	I6_AR1	ActiveIntronRegion	0	1.79	6.35	0.00	4.20	0.00	4.01	2.91	0.88	5.47	2.06	0.00	4.40	3.51	1.40	4.59	3.15	0.97	5.73	13.58	0.00	6.17	0.00	1.07	1.69	0.87	0.00	0.00	3.58	0.00
50	E7_Aa	NovelBoundary	0	0.00	8.63	0.00	8.63	18.13	7.29	6.75	1.99	9.14	3.36	3.23	2.50	1.85	2.33	0.00	20.35	1.40	4.62	48.33	0.00	3.97	0.00	2.51	5.56	1.93	0.00	2.53	0.00	0.00
51	ER7a	ExonRegion	1	1153.84	1945.35	324.98	2940.67	2214.33	2176.40	3022.06	789.28	1961.62	1155.10	1755.50	2254.30	2123.18	526.80	1793.44	853.47	544.64	1021.65	5037.93	687.95	1589.69	730.79	1360.85	713.17	645.24	440.95	2102.33	411.15	945.26
52	IG47_SR2	SilentIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	1.00	0.00	0.00	0.29	0.00	0.00	0.97	0.00	0.66	0.00	0.00	0.00	0.00	0.00	1.08	0.00	0.00	0.36	1.57	0.00	1.01	0.00	2.12	0.00
53	IG47_AR1	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.12	0.00	0.00	2.47	0.00	0.15	0.00	0.00	0.33	0.00	0.00	2.81	0.00	0.00	1.81	0.00	0.00	1.57	0.00	1.63	0.00