Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	KLHDC9	Gene	0	14.43	3.14	4.66	23.03	23.67	3.29	14.20	14.63	2.73	3.70	2.45	3.99	4.62	2.11	0.83	1.37	2.27	2.84	10.35	1.90	0.92	1.22	4.03	2.42	1.37	0.40	6.50	7.63	1.89
2	474785	Transcript	0	0.35	0.00	0.00	0.00	1.87	0.75	1.11	0.51	0.29	0.00	0.00	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
3	469647	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	444550	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	392191	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	392192	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	452810	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	471613	Transcript	0	3.12	1.17	0.24	3.79	0.19	0.55	2.91	0.47	0.35	1.19	0.00	0.33	0.49	0.47	0.00	1.04	1.20	2.09	3.44	0.50	0.58	0.01	0.03	1.56	0.52	0.28	0.37	1.21	0.59
9	490724	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	368011	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
11	494418	Transcript	0	0.00	0.00	0.00	0.00	7.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62
12	475934	Transcript	0	2.32	0.05	0.70	0.00	0.07	3.34	3.95	1.61	0.03	0.38	1.70	0.00	0.02	0.00	0.00	1.27	1.47	1.33	4.59	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00
13	ER1a	ExonRegion	0	0.35	0.00	0.00	0.00	1.87	0.75	1.11	0.51	0.29	0.00	0.00	0.00	0.29	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	E1_Ab	KnownBoundary	0	0.00	0.00	0.00	0.00	6.78	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E1_Ac	KnownBoundary	0	2.71	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.67	0.00	0.00	0.00	1.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
16	ER1b	ExonRegion	0	2.14	0.00	0.00	0.00	4.98	0.00	0.00	1.84	1.12	0.00	0.00	0.00	1.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
17	ER1c	ExonRegion	0	4.53	0.00	1.31	12.59	6.09	0.00	2.80	2.05	1.69	0.00	1.06	0.00	1.30	0.15	0.00	0.00	0.06	0.00	2.77	3.12	0.00	0.00	0.00	0.00	0.00	0.00	0.10	0.09	1.27
18	E1_Da	KnownBoundary	0	0.00	0.00	1.54	9.27	7.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.19	0.00	0.00	0.00	0.00	0.00	2.07	0.00	0.00	0.00	1.99	0.00	0.00
19	E1a_E1h	KnownJunction	0	16.81	0.00	5.36	59.96	49.66	3.41	30.78	23.59	1.55	3.75	1.30	0.00	1.43	1.13	0.00	0.00	0.99	0.00	0.00	8.10	1.76	0.00	4.48	0.00	0.00	0.00	10.09	11.77	2.87
20	ER1d	ExonRegion	1	10.72	0.00	3.37	29.25	14.94	0.00	15.12	7.36	2.25	1.44	1.19	0.00	1.30	0.91	0.00	0.00	1.00	0.00	9.05	5.62	0.00	0.00	0.00	0.00	0.00	0.00	1.83	1.63	1.34
21	ER1e	ExonRegion	1	10.93	0.00	4.38	38.76	28.39	0.96	19.55	12.52	1.80	1.73	1.19	0.00	1.30	0.91	0.00	0.00	1.30	0.00	9.05	5.62	0.00	0.00	1.81	0.00	0.00	0.00	3.48	3.42	1.74
22	ER1f	ExonRegion	0	14.36	0.00	4.49	59.96	51.31	2.75	22.17	18.41	1.12	2.89	1.19	0.00	1.30	1.54	0.00	0.00	2.00	1.64	9.05	5.62	0.00	0.00	5.42	0.00	0.00	0.00	5.31	9.13	3.49
23	ER1g	ExonRegion	0	4.71	0.00	2.55	9.27	17.50	0.00	3.64	0.58	1.75	0.46	0.00	0.00	1.30	1.66	0.00	0.00	1.00	2.40	8.83	0.00	0.00	0.00	4.68	0.00	0.00	0.00	4.51	0.20	0.00
24	E1_Ag	KnownBoundary	0	11.50	0.00	1.54	9.49	26.38	1.57	5.26	2.14	2.83	1.72	0.00	0.00	1.72	1.37	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.92	0.00	0.00	0.00	4.72	0.00	0.00
25	ER1h	ExonRegion	0	3.75	0.00	2.34	7.31	28.78	1.76	6.05	1.84	1.19	1.44	0.00	1.24	1.15	0.98	0.00	0.00	0.42	4.09	0.63	0.00	0.00	0.00	1.81	0.00	0.00	0.00	2.19	4.89	0.00
26	E1_Db	KnownBoundary	0	5.54	0.00	1.40	0.00	19.01	3.91	10.76	0.00	0.00	0.00	0.00	1.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	10.56	0.00
27	E1b_E1h	KnownJunction	0	0.00	0.00	0.00	0.00	7.22	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62	0.00	0.00	0.00	1.40	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.62
28	ER1i	ExonRegion	0	4.37	0.00	0.19	0.32	2.96	0.97	4.42	0.70	0.63	0.80	0.28	0.13	0.55	0.67	0.00	0.68	0.64	2.01	2.67	0.03	0.39	0.84	0.48	0.30	0.15	0.00	1.14	1.62	0.02
29	E1_Ah	KnownBoundary	0	2.54	0.00	0.00	0.00	0.00	1.96	10.47	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	3.69	0.00	0.00	0.00	0.00	2.38	2.51	3.05	1.89	0.00	7.06	2.07	0.00
30	ER1j	ExonRegion	0	22.28	0.69	6.74	30.47	36.59	2.50	15.35	16.24	2.06	3.24	2.04	3.64	3.22	1.44	1.90	1.55	2.50	2.78	7.55	1.98	0.31	1.43	4.80	2.13	0.49	0.61	5.85	9.41	1.52
31	E1_Dc	KnownBoundary	0	0.00	0.00	1.54	9.06	0.00	0.00	2.69	0.00	1.55	5.79	0.00	0.00	0.00	0.00	0.00	2.98	2.32	0.00	0.00	0.00	1.85	0.00	0.00	0.00	0.00	0.00	0.00	1.93	0.00
32	E1c_E1i	KnownJunction	0	12.92	4.65	7.90	59.10	84.00	5.29	21.17	39.51	6.18	9.11	0.00	6.69	9.90	1.22	0.00	0.00	1.15	0.00	0.00	3.31	0.00	1.90	6.06	5.80	3.86	0.00	10.98	9.80	9.31
33	E1c_E2c	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.77	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.51	0.00	0.00	0.00	0.00	6.56	0.00
34	ER1k	ExonRegion	0	3.12	1.17	0.24	3.79	0.19	0.55	2.91	0.47	0.35	1.19	0.00	0.33	0.49	0.47	0.00	1.04	1.20	2.09	3.44	0.50	0.58	0.01	0.03	1.56	0.52	0.28	0.37	1.21	0.59
35	E1_Ai	KnownBoundary	0	2.95	0.00	1.07	0.00	0.00	1.50	0.00	0.00	0.00	0.00	0.00	1.45	0.00	1.04	0.00	2.98	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.05
36	ER1l	ExonRegion	0	22.80	3.33	12.81	56.67	35.77	5.42	21.42	35.13	5.91	3.43	3.67	5.21	7.78	1.78	0.00	3.97	3.81	4.93	20.37	3.79	2.28	0.48	6.93	4.45	4.05	0.00	13.23	15.69	7.81
37	E1_Dd	KnownBoundary	0	19.23	0.00	10.12	32.14	52.91	9.21	10.99	35.63	5.21	5.51	1.33	4.19	4.39	3.23	0.00	0.00	5.04	0.00	40.46	0.00	5.41	2.09	6.70	8.97	3.37	0.00	22.91	16.85	6.80
38	ER1m	ExonRegion	0	24.49	6.34	10.51	31.77	48.73	11.72	34.73	42.75	7.31	9.03	8.82	9.01	11.08	4.00	3.22	3.40	5.54	1.60	27.15	4.30	1.97	2.59	9.64	5.04	2.66	0.92	15.66	18.47	2.33
39	E1e_E2a	NovelJunction	0	2.77	0.00	0.00	0.00	7.07	0.00	0.00	0.00	0.00	0.00	0.00	1.48	0.00	0.00	0.00	0.00	2.30	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
40	E1e_E2b	KnownJunction	0	0.00	4.85	1.00	0.00	7.37	1.61	7.21	4.38	3.38	0.00	0.00	0.00	1.69	0.00	0.00	0.00	0.00	4.62	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	E1e_E2c	KnownJunction	0	30.20	12.51	8.32	20.49	39.05	13.58	53.21	32.99	12.24	17.26	15.37	17.05	14.84	3.70	0.00	2.75	6.89	0.00	40.46	0.00	2.05	2.29	8.96	8.37	6.67	0.00	8.95	12.63	4.95
42	E1e_E3a	NovelJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
43	ER2a	ExonRegion	0	2.32	0.05	0.70	0.00	0.07	3.34	3.95	1.61	0.03	0.38	1.70	0.00	0.02	0.00	0.00	1.27	1.47	1.33	4.59	0.00	1.05	0.00	0.00	0.00	0.00	0.00	0.00	1.04	0.00
44	E2_Ab	KnownBoundary	0	9.02	0.00	1.54	0.00	0.00	4.80	8.30	4.68	0.00	1.96	0.00	0.00	0.00	0.00	0.00	0.00	2.39	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.71	0.00
45	E2_Ac	KnownBoundary	0	0.00	0.00	0.95	0.00	7.22	0.00	7.67	6.87	1.07	0.00	1.61	0.00	0.00	0.97	0.00	0.00	0.00	0.00	8.09	0.00	2.05	0.00	2.17	0.00	0.00	0.00	0.00	0.00	0.00
46	ER2b	ExonRegion	0	10.15	3.80	2.48	0.77	11.80	2.75	13.26	11.63	2.96	2.20	1.75	0.78	1.98	0.95	0.00	0.13	2.37	3.02	6.19	0.30	1.50	0.09	0.48	0.34	0.30	0.00	0.87	2.32	0.57
47	ER2c	ExonRegion	0	32.06	10.66	11.19	53.14	43.26	8.34	33.56	38.03	6.14	9.98	10.12	12.92	15.31	6.55	0.00	1.18	4.67	4.90	18.60	4.64	1.98	3.95	10.63	4.77	5.05	0.55	15.33	16.18	7.39
48	E2_Da	KnownBoundary	0	35.39	4.85	4.39	31.49	27.85	3.61	25.63	29.46	3.41	19.01	14.14	14.31	12.93	4.52	0.00	0.00	3.51	4.62	24.28	0.00	0.00	0.00	4.63	11.31	3.33	1.97	20.03	19.90	4.52
49	E2_Db	KnownBoundary	0	17.93	9.11	12.13	83.90	42.30	7.33	32.38	38.52	8.59	17.14	4.46	7.26	7.01	10.48	0.00	3.37	0.86	0.00	40.46	0.00	0.00	0.00	10.88	8.55	4.74	0.00	12.67	20.31	3.37
50	ER2d	ExonRegion	0	39.50	11.03	12.34	62.68	40.56	8.74	42.47	51.16	6.90	22.38	12.33	15.11	16.79	11.92	0.00	2.89	3.79	7.99	44.94	0.60	0.00	0.13	11.11	14.14	5.62	0.00	23.02	27.71	5.27
51	ER2e	ExonRegion	0	37.51	18.24	12.73	71.97	70.66	9.37	35.70	46.46	7.72	16.98	5.32	11.49	15.21	13.15	0.00	4.66	3.95	4.17	41.21	0.00	0.34	2.18	16.51	9.57	8.31	0.00	23.71	27.37	4.31
52	E2_Dc	NovelBoundary	0	3.01	0.00	0.00	9.49	0.00	1.61	0.00	1.94	2.74	0.00	3.70	1.87	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
53	E2c_E3a	KnownJunction	0	40.58	21.04	6.30	41.63	67.64	8.59	23.29	32.90	6.58	10.67	6.11	9.61	14.04	11.59	0.00	0.00	5.31	0.00	16.18	0.00	1.60	4.96	13.35	2.63	7.12	0.00	20.28	15.73	2.58
54	I2	Intron	0	3.31	0.00	0.65	0.00	4.72	1.33	4.28	1.42	2.27	1.12	0.92	1.31	0.00	0.35	0.00	0.00	2.02	1.12	1.85	0.00	0.55	0.35	0.00	0.00	0.00	0.30	0.00	2.83	0.00
55	I2_AR1	ActiveIntronRegion	0	3.34	0.00	0.65	0.00	4.75	1.34	4.32	1.43	2.29	1.12	0.93	1.32	0.00	0.35	0.00	0.00	2.03	1.12	1.87	0.00	0.56	0.35	0.00	0.00	0.00	0.31	0.00	2.86	0.00
56	E3_Aa	NovelBoundary	0	3.01	0.00	0.00	0.00	0.00	0.00	7.44	7.17	0.00	2.04	3.23	0.00	0.00	1.13	0.00	0.00	6.55	0.00	8.09	0.00	2.01	0.00	0.00	0.00	0.00	0.00	0.00	3.68	0.00
57	ER3a	ExonRegion	0	15.64	6.07	4.00	24.98	29.33	3.55	19.69	18.71	5.26	5.22	1.79	7.39	7.50	2.93	1.90	1.52	3.06	4.20	15.48	3.60	1.92	2.25	4.87	3.45	1.80	0.96	9.85	9.04	1.81
58	E3_Da	KnownBoundary	0	13.51	9.60	7.70	148.18	63.81	7.48	12.76	4.28	0.00	1.48	1.49	4.73	10.35	1.13	0.00	0.00	1.80	4.62	24.28	4.05	3.77	0.00	4.04	8.25	0.00	0.00	26.39	11.10	1.55
59	ER3b	ExonRegion	0	6.25	8.63	4.17	60.80	28.47	5.22	5.01	0.74	0.00	0.00	1.19	2.54	5.72	0.78	0.00	0.07	0.52	3.66	17.59	2.57	2.69	0.05	1.81	4.73	0.00	0.04	15.49	6.52	0.61
60	ER3c	ExonRegion	0	0.00	0.00	0.00	7.31	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	1.81	0.00	0.00	0.00	0.00	0.00	0.00
61	ER3d	ExonRegion	0	0.00	0.00	0.00	3.66	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.73	0.00	0.00	0.00	0.00	1.81	0.00	0.00	0.00	0.00	0.00	0.00