Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP4-644F6.2	Gene	0	20.04	22.64	3.68	4.62	6.16	12.17	19.85	4.75	22.81	20.10	7.57	3.14	7.36	10.65	22.81	4.28	2.84	5.99	6.37	3.71	6.06	27.27	2.33	12.29	11.40	2.40	5.48	1.39	5.22
2	394662	Transcript	0	16.87	14.94	3.18	3.53	4.48	9.18	17.62	4.30	16.21	16.98	7.17	2.58	6.47	7.92	20.13	4.28	2.46	3.81	6.08	3.61	4.00	24.54	1.80	9.48	9.34	1.92	4.32	1.67	4.66
3	IG14_AR1	ActiveIntergenicRegion	0	12.95	11.73	4.06	31.31	27.26	12.62	33.20	4.88	18.34	24.47	17.04	3.75	3.93	7.20	37.44	5.25	1.81	8.89	9.31	2.30	3.44	30.17	3.48	13.06	12.44	4.58	8.45	3.96	7.47
4	ER1a	ExonRegion	0	41.05	31.34	6.18	4.62	1.60	22.33	62.11	9.91	43.17	38.02	22.16	7.48	13.45	20.13	69.42	10.18	4.91	13.13	14.94	8.25	11.15	55.13	6.10	15.68	25.20	3.22	7.99	4.68	12.30
5	E1_Da	NovelBoundary	0	3.01	3.49	0.97	0.00	0.00	3.91	2.46	2.39	6.88	0.00	0.00	0.00	0.00	3.50	16.74	0.00	1.40	0.00	8.09	0.00	0.00	15.02	0.00	9.15	0.00	0.00	0.00	4.04	0.00
6	E1a_E2a	KnownJunction	0	45.83	16.19	16.87	10.78	6.04	14.00	60.30	8.11	31.31	56.52	34.29	11.02	17.04	24.86	88.70	27.92	13.12	9.25	24.28	21.01	5.17	76.67	7.19	18.90	25.04	7.42	14.01	10.87	23.60
7	I1_AR1	ActiveIntronRegion	0	5.44	1.71	0.65	0.00	1.91	1.88	3.15	1.08	5.59	1.70	1.40	0.24	1.14	1.59	1.80	0.00	0.00	0.75	3.75	1.08	0.84	4.93	0.35	3.36	1.68	0.31	0.00	0.00	0.00
8	ER2a	ExonRegion	0	47.42	26.74	15.31	24.57	30.75	18.90	69.65	11.94	36.08	43.65	14.33	5.37	14.78	23.76	77.80	7.39	10.57	12.13	10.93	14.23	9.87	81.70	4.63	23.39	31.20	3.36	9.30	4.48	9.59
9	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
10	ER3a	ExonRegion	0	42.81	26.73	2.47	13.30	15.85	16.16	44.07	17.16	25.58	35.90	13.11	9.10	9.51	16.97	61.86	11.14	6.18	12.28	13.33	11.55	7.61	68.83	5.03	23.49	21.79	7.30	9.21	3.81	10.75
11	E3_Da	NovelBoundary	0	56.04	27.15	7.47	8.41	7.37	42.63	143.04	21.50	77.20	69.59	33.18	10.21	22.51	34.96	140.72	10.40	17.20	27.61	24.28	8.19	15.08	104.19	6.16	31.58	30.12	10.60	12.08	4.58	17.43
12	E3a_E4a	KnownJunction	0	7.79	0.00	0.00	0.00	0.00	8.75	9.84	4.63	16.26	2.00	7.31	0.00	7.32	5.94	0.00	0.00	0.00	0.00	0.00	0.00	0.00	27.76	1.87	13.64	5.57	0.00	2.34	2.20	0.00
13	I3	Intron	0	25.27	28.99	4.52	12.46	4.72	20.71	27.65	6.76	32.91	26.78	13.79	5.60	10.24	9.97	34.45	2.26	1.73	5.64	20.37	6.47	8.27	26.82	1.05	19.95	12.70	1.52	8.14	1.26	4.91
14	I3_AR1	ActiveIntronRegion	0	25.45	29.21	4.56	12.56	4.75	20.87	27.83	6.81	33.16	26.98	13.90	5.64	10.32	10.05	34.69	2.28	1.74	5.69	20.52	6.52	8.33	27.01	1.06	20.10	12.78	1.53	8.20	1.27	4.94
15	E4_Aa	NovelBoundary	0	38.28	45.95	2.42	28.69	19.16	55.10	50.29	6.32	86.70	32.96	32.93	13.16	17.39	18.17	69.16	9.72	3.62	15.28	8.09	13.56	20.18	42.83	4.58	44.44	23.94	4.38	23.01	0.00	12.31
16	ER4a	ExonRegion	0	18.03	26.93	0.74	3.02	2.06	17.70	17.18	5.10	15.91	20.28	8.36	1.85	9.20	10.19	14.72	2.09	0.03	3.29	12.12	3.48	6.61	22.75	0.76	15.41	8.22	0.66	8.61	0.24	6.20
17	E4_Da	NovelBoundary	0	26.84	31.80	13.13	0.00	17.54	54.06	24.20	0.00	53.02	42.58	15.18	1.87	12.83	9.19	58.60	10.10	5.83	13.87	8.09	0.00	26.31	37.39	0.00	30.86	13.41	5.92	16.50	1.80	7.10
18	E4a_E5a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	I4	Intron	0	1.61	7.25	0.00	10.75	7.33	12.37	16.63	5.52	11.80	6.50	4.46	0.00	0.97	0.68	22.73	0.00	0.00	4.33	9.58	0.00	7.49	4.06	0.00	16.13	9.65	0.00	19.23	3.67	0.00
20	I4_AR1	ActiveIntronRegion	0	1.63	7.35	0.00	10.91	7.44	12.54	16.88	5.61	11.94	6.57	4.53	0.00	0.99	0.69	22.99	0.00	0.00	4.40	9.73	0.00	7.60	4.12	0.00	16.37	9.73	0.00	19.52	3.72	0.00
21	E5_Aa	NovelBoundary	0	10.56	55.75	1.15	0.00	0.00	16.11	24.43	0.00	28.66	24.53	1.58	5.06	4.33	10.44	0.00	3.82	2.18	4.62	40.46	0.00	11.59	2.33	4.53	8.61	0.00	5.88	11.33	0.00	2.94
22	ER5a	ExonRegion	0	9.44	26.78	3.67	3.78	3.44	11.18	5.34	1.93	23.64	14.07	5.13	1.90	6.20	10.00	8.22	1.96	2.36	5.25	4.49	2.11	5.14	13.12	1.91	10.03	6.56	1.80	4.99	0.57	2.60
23	E5_Da	NovelBoundary	0	5.90	22.88	0.00	10.35	6.19	20.18	0.00	0.00	20.77	11.14	4.71	1.20	1.62	4.72	9.97	10.86	2.25	0.00	0.00	3.23	3.49	4.62	0.00	11.36	6.71	0.00	2.53	0.00	4.82
24	E5a_E6a	KnownJunction	0	0.00	13.77	0.00	0.00	0.00	7.29	0.00	0.00	5.45	7.31	0.00	0.00	4.65	4.43	0.00	0.00	0.00	0.00	0.00	0.00	1.72	11.13	0.00	0.00	7.46	0.00	2.14	0.00	1.68
25	I5	Intron	0	10.31	23.86	2.05	0.00	0.92	15.42	7.41	1.04	20.29	20.28	5.50	3.95	5.37	8.13	7.97	3.61	1.97	7.96	3.31	1.15	6.19	11.56	0.68	11.36	10.11	1.63	2.24	0.31	4.72
26	I5_AR1	ActiveIntronRegion	0	9.17	27.24	1.29	0.00	1.36	17.58	7.60	1.03	24.85	18.69	5.35	3.54	4.92	8.72	6.81	4.37	2.34	9.01	4.02	1.43	5.80	10.47	0.51	12.03	9.71	1.72	1.34	0.46	6.05
27	I5_SR1	SilentIntronRegion	0	12.80	17.05	3.66	0.00	0.00	11.06	7.09	1.08	10.95	23.85	5.87	4.86	6.37	7.00	10.49	2.07	1.23	5.85	1.87	0.58	7.06	13.97	1.06	10.05	11.05	1.46	4.17	0.00	1.99
28	ER6a	ExonRegion	0	9.24	8.68	1.21	0.00	5.85	3.50	1.45	0.91	6.74	10.18	1.71	1.47	2.81	3.84	4.02	2.38	1.09	1.38	3.06	0.00	4.10	10.91	0.43	3.61	4.72	1.88	1.32	0.00	3.67
29	E6_Da	NovelBoundary	0	19.94	0.00	4.21	0.00	0.00	1.65	8.58	0.00	16.60	5.87	0.00	3.52	2.90	9.24	24.72	0.00	0.00	9.25	0.00	0.00	7.54	4.42	0.00	22.19	7.69	2.06	7.01	0.00	3.04
30	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
31	I6	Intron	0	6.47	5.69	0.33	3.49	1.43	4.55	1.18	1.08	6.28	6.89	2.08	1.26	1.76	4.01	3.48	2.41	1.02	2.09	2.18	0.80	1.80	3.33	1.06	5.02	3.90	0.61	3.03	0.32	3.12
32	I6_SR1	SilentIntronRegion	0	6.49	5.70	0.33	3.50	1.43	4.57	1.18	1.08	6.30	6.91	2.09	1.27	1.77	4.03	3.49	2.42	1.02	2.10	2.18	0.81	1.81	3.35	1.06	5.04	3.91	0.61	3.04	0.32	3.14
33	E7_Aa	NovelBoundary	0	8.32	3.49	4.71	0.00	0.00	8.59	4.92	1.94	11.69	7.83	4.30	7.11	1.72	4.32	9.97	7.11	1.22	0.00	8.09	0.00	1.56	15.51	0.00	14.54	5.80	0.00	0.00	0.00	1.29
34	ER7a	ExonRegion	0	4.88	0.00	0.00	0.00	2.77	0.78	2.28	0.00	2.88	1.40	2.64	0.00	1.44	1.31	3.11	0.00	0.00	0.00	0.00	0.00	2.42	6.13	0.00	1.22	0.84	0.00	0.00	0.00	0.00
35	E7_Da	NovelBoundary	0	741.80	3664.24	739.47	374.87	213.98	939.24	277.84	254.15	1680.73	1503.23	652.62	291.35	655.58	598.78	217.66	238.98	280.47	375.66	193.77	33.25	426.93	1842.79	213.25	640.32	365.86	167.32	458.86	182.15	330.10
36	E7a_E8a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
37	E8_Aa	NovelBoundary	0	0.00	0.00	3.74	0.00	0.00	0.00	0.00	0.00	0.00	1.80	1.30	1.87	0.00	6.25	0.00	0.00	1.33	0.00	0.00	0.00	0.00	0.00	0.00	3.05	0.00	0.00	2.48	0.00	0.00
38	ER8a	ExonRegion	0	23.58	17.81	1.46	0.00	1.23	9.31	12.92	3.91	23.90	17.65	3.80	2.55	6.45	6.71	5.31	4.38	1.28	4.64	2.19	0.72	3.59	23.02	1.88	16.98	10.36	2.78	7.01	0.00	5.98
39	E8_Da	NovelBoundary	0	11.09	21.14	3.01	0.00	5.75	3.80	15.85	8.71	5.66	15.82	2.37	5.03	4.68	7.07	0.00	0.00	5.85	0.00	0.00	0.00	3.25	19.64	6.94	14.36	12.69	4.12	0.00	0.00	1.95
40	E8a_E9a	KnownJunction	0	22.24	32.87	4.14	0.00	0.00	13.16	7.44	7.02	26.37	23.29	5.88	1.14	11.62	1.88	0.00	0.00	1.13	0.00	15.96	0.00	3.89	9.14	0.00	10.23	5.23	1.93	4.57	0.00	1.68
41	I8	Intron	0	7.39	7.62	1.61	2.31	1.12	6.25	7.87	1.10	9.68	9.29	1.75	1.59	1.22	4.55	5.74	2.82	1.99	2.60	3.67	1.20	1.51	4.31	1.08	11.66	4.14	0.79	2.95	0.22	2.89
42	I8_AR1	ActiveIntronRegion	0	10.35	9.16	2.49	0.36	1.55	6.07	9.05	2.14	10.59	9.59	1.75	1.96	1.78	6.46	6.97	1.34	3.11	3.36	5.62	1.06	2.65	7.08	1.89	12.58	4.31	0.50	1.74	0.00	4.47
43	I8_SR1	SilentIntronRegion	0	5.13	6.45	0.94	3.81	0.80	6.41	6.99	0.30	9.02	9.08	1.75	1.31	0.79	3.09	4.81	3.97	1.13	2.01	2.18	1.30	0.63	2.18	0.46	11.00	4.02	1.02	3.88	0.40	1.68
44	E9_Aa	NovelBoundary	0	2.71	8.43	0.00	9.27	6.04	14.66	0.00	0.00	7.70	7.03	0.00	1.23	0.00	0.95	0.00	3.37	0.00	0.00	8.09	0.00	0.00	4.62	0.00	4.85	6.52	0.00	0.00	0.00	1.45
45	ER9a	ExonRegion	0	14.52	26.16	2.00	0.00	6.64	13.06	6.88	2.41	18.26	16.46	3.16	2.01	5.56	4.59	9.04	5.24	1.17	3.45	1.99	0.00	6.66	10.83	0.84	8.64	6.67	2.30	1.99	1.46	1.20
46	IG15_SR1	SilentIntergenicRegion	0	4.35	10.89	0.65	0.98	4.02	3.84	4.58	1.60	7.57	8.53	2.04	1.42	2.28	3.31	4.28	2.91	0.29	2.36	3.35	0.76	1.38	3.46	0.25	7.88	3.18	1.29	3.84	0.22	2.14
47	IG15_AR1	ActiveIntergenicRegion	0	6.69	43.65	0.42	3.19	3.09	12.69	9.33	0.41	36.69	13.69	4.99	4.61	4.40	6.83	12.63	5.87	1.66	9.32	8.93	3.46	4.74	7.15	1.14	18.75	6.58	1.24	2.73	0.90	4.21
48	IG15_AR2	ActiveIntergenicRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	1.17	0.40	4.26	0.42	0.00	0.38	0.28	0.00	0.00	1.44	1.33	0.28	0.46	0.08	1.18	0.00	0.00	0.57	0.41	0.38	0.00	0.00	1.45