Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	C1orf52	Gene	0	27.23	15.52	17.22	61.85	31.71	16.38	54.21	38.72	13.13	18.79	17.78	14.90	21.94	12.44	30.23	25.28	19.23	17.88	34.86	39.51	11.88	19.16	16.44	17.34	13.29	13.35	35.54	14.11	11.12
2	294661	Transcript	0	19.26	3.66	9.36	113.11	35.51	7.53	45.32	9.32	5.26	5.59	3.03	10.13	13.09	5.79	13.25	26.90	8.21	23.36	17.78	20.94	4.05	8.23	12.28	6.10	1.43	10.98	4.55	12.01	8.05
3	431175	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	471115	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	344356	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	493514	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	38.51	7.31	18.71	226.22	71.03	15.03	90.64	18.65	10.51	11.18	6.07	20.27	26.19	11.59	26.38	53.80	16.42	46.57	35.48	41.89	8.10	16.46	24.56	12.14	2.86	21.95	9.10	24.03	16.11
8	E1_Ac	KnownBoundary	0	160.74	42.27	73.80	891.46	277.94	77.85	381.68	104.31	52.04	62.20	27.81	75.57	80.25	36.43	84.51	215.50	61.68	156.94	105.20	177.06	59.68	87.80	109.48	48.57	17.81	91.66	65.50	91.62	65.00
9	ER1b	ExonRegion	0	115.51	29.20	68.32	639.45	174.91	56.67	301.91	78.96	39.45	44.44	22.61	64.73	70.29	32.25	60.98	158.03	57.32	138.28	90.52	131.79	48.81	67.90	84.18	32.27	13.18	65.14	36.02	67.01	48.17
10	ER1c	ExonRegion	0	110.09	35.35	65.05	212.92	101.28	58.22	217.81	160.25	37.49	62.85	45.28	53.66	79.01	46.15	113.21	98.62	70.57	87.66	91.70	166.80	42.44	93.38	68.83	49.66	36.92	76.30	76.07	64.75	51.00
11	E1_Da	NovelBoundary	0	2.65	0.00	1.25	0.00	0.00	0.00	0.00	0.00	1.55	0.00	1.46	0.00	0.00	1.06	8.17	7.65	6.44	0.00	8.09	6.78	0.00	0.00	0.00	0.00	0.00	2.19	2.24	1.93	0.00
12	E1a_E2a	KnownJunction	0	49.37	8.63	21.33	20.06	19.90	36.49	35.64	128.60	27.92	24.05	27.21	44.37	51.17	23.15	8.37	27.46	57.04	9.25	64.74	58.88	18.77	39.38	23.49	23.87	26.18	26.05	59.54	46.91	24.93
13	E1a_E3a	KnownJunction	0	35.33	45.28	24.17	48.53	100.80	19.57	144.18	59.42	23.66	43.18	38.02	55.87	40.22	25.08	122.18	42.76	49.66	55.48	226.59	131.74	24.55	50.12	76.14	26.14	36.03	71.97	169.37	110.80	30.27
14	I1	Intron	0	6.59	1.16	2.12	1.30	0.00	1.49	0.36	2.33	0.71	0.78	0.22	0.33	0.00	1.72	2.66	2.69	3.78	5.98	2.31	3.07	0.00	0.00	0.00	1.17	0.00	0.00	0.00	0.59	0.00
15	I1_SR1	SilentIntronRegion	0	6.64	1.17	2.13	1.31	0.00	1.50	0.37	2.35	0.71	0.79	0.22	0.34	0.00	1.73	2.68	2.71	3.80	6.02	2.33	3.09	0.00	0.00	0.00	1.18	0.00	0.00	0.00	0.59	0.00
16	E2_Aa	NovelBoundary	0	2.83	0.00	0.00	0.00	0.00	0.00	2.98	0.00	0.00	0.00	0.00	0.00	0.00	4.05	8.37	0.00	4.48	0.00	0.00	0.00	0.00	0.00	0.00	4.96	1.93	0.00	5.81	0.00	0.00
17	ER2a	ExonRegion	0	89.20	21.16	64.10	102.78	49.31	21.01	44.70	124.95	18.85	28.92	31.46	23.00	38.80	31.90	25.05	42.19	41.99	22.09	37.77	66.81	11.59	36.38	17.78	41.84	29.77	14.40	43.02	18.41	14.08
18	E2_Da	NovelBoundary	0	8.14	0.00	3.31	0.00	0.00	0.00	4.69	5.08	0.00	8.99	0.00	0.00	3.12	9.13	8.97	13.23	21.02	14.51	0.00	11.83	0.00	0.00	0.00	3.05	5.23	0.00	1.94	4.58	0.00
19	E2a_E3a	KnownJunction	0	65.71	78.24	51.90	135.89	52.46	30.66	83.19	147.85	29.11	48.37	58.94	24.19	50.35	33.66	57.80	67.09	35.09	37.76	64.51	94.19	14.20	38.85	20.93	69.45	63.95	19.65	54.97	19.46	25.75
20	I2	Intron	0	8.62	4.85	0.42	0.00	0.00	5.18	4.05	7.40	0.70	7.25	2.09	2.63	0.00	5.91	3.70	1.25	7.13	9.28	4.82	9.50	7.88	1.36	0.45	1.62	2.51	4.34	2.30	1.23	0.67
21	I2_SR1	SilentIntronRegion	0	8.69	4.90	0.42	0.00	0.00	5.23	4.09	7.47	0.71	7.33	2.11	2.66	0.00	5.97	3.73	1.26	7.20	9.37	4.86	9.56	7.96	1.37	0.46	1.64	2.54	4.39	2.32	1.24	0.68
22	E3_Aa	NovelBoundary	0	14.10	3.68	6.33	0.00	6.63	5.37	12.02	6.82	4.26	17.66	1.61	1.17	2.87	9.64	16.34	0.00	24.38	9.25	16.18	8.27	7.66	6.42	0.00	10.83	1.74	0.00	0.00	4.04	9.28
23	ER3a	ExonRegion	0	182.82	136.28	99.53	404.84	246.72	109.41	309.37	273.05	88.54	129.95	109.60	87.80	134.50	89.10	204.15	163.06	114.82	112.02	271.09	272.10	77.82	127.65	99.55	143.15	105.12	74.45	225.14	85.09	61.81
24	E3_Da	NovelBoundary	0	12.98	9.60	5.31	0.00	0.00	18.61	4.63	17.17	4.17	19.73	6.07	6.11	1.97	17.24	15.75	43.22	50.29	47.78	32.37	18.19	5.33	5.79	2.46	17.83	0.00	0.00	4.27	1.80	0.00
25	E3a_E5a	KnownJunction	0	129.65	151.82	70.36	299.16	131.16	105.20	532.21	197.22	123.09	147.16	222.71	133.46	194.63	85.86	280.04	183.83	141.94	97.22	445.09	283.66	110.34	109.83	87.27	110.54	96.80	79.09	398.97	76.20	85.37
26	I3	Intron	0	13.23	13.67	3.59	10.90	2.18	27.18	8.12	5.44	10.69	16.02	4.26	3.70	2.37	14.48	11.34	31.79	37.53	22.72	19.15	21.57	11.23	1.13	0.97	8.28	5.89	2.95	1.80	2.48	3.28
27	I3_SR1	SilentIntronRegion	0	14.70	16.56	5.49	15.36	2.79	32.99	9.79	6.31	12.82	19.39	4.08	5.02	2.40	18.14	9.19	39.70	47.56	25.22	18.71	25.10	14.26	1.55	1.29	10.14	5.72	2.69	2.62	1.86	3.05
28	I3_AR1	ActiveIntronRegion	0	10.88	8.91	0.40	3.47	1.18	17.61	5.36	4.00	7.18	10.47	4.60	1.49	2.34	8.42	15.08	18.65	20.93	18.70	20.08	15.80	6.21	0.44	0.44	5.20	6.23	3.42	0.44	3.55	3.71
29	ER4a	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.09	0.00	0.00	0.00	0.00	0.03	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
30	I4	Intron	0	8.25	13.30	1.31	2.08	2.29	15.16	4.60	3.01	8.58	10.82	3.03	3.57	1.39	7.59	13.06	17.74	33.33	17.25	24.08	11.87	6.79	0.60	0.40	8.03	6.49	3.23	2.38	1.79	2.46
31	I4_AR1	ActiveIntronRegion	0	5.03	5.71	0.44	2.54	0.00	12.31	2.19	0.00	1.47	3.33	1.14	2.42	0.00	2.68	7.06	4.18	4.09	1.31	8.85	7.09	2.23	0.00	0.00	5.61	0.50	0.68	1.43	1.28	0.00
32	I4_SR1	SilentIntronRegion	0	11.12	12.55	1.20	1.66	5.56	21.10	6.38	3.45	7.50	16.68	4.13	4.68	1.05	11.95	9.62	27.01	42.02	23.98	30.69	17.72	6.61	1.03	0.59	9.96	9.79	3.33	2.18	2.45	2.40
33	I4_AR2	ActiveIntronRegion	0	11.73	13.54	2.58	3.01	2.05	24.25	9.18	5.92	6.92	14.31	4.64	2.84	1.72	11.96	17.26	20.16	38.73	19.44	29.30	17.34	6.23	0.76	0.76	5.08	5.71	7.42	3.84	2.32	5.76
34	I4_SR2	SilentIntronRegion	0	2.83	10.68	0.88	0.63	0.43	4.96	1.42	1.13	5.17	2.67	0.84	1.79	1.31	1.83	8.81	5.21	13.65	9.51	19.10	7.38	4.26	0.32	0.00	1.51	2.14	0.83	0.32	0.43	1.76
35	I4_AR5	ActiveIntronRegion	0	8.48	16.36	1.12	3.21	1.09	13.65	3.31	2.75	13.60	10.78	3.11	4.51	1.64	6.35	17.79	19.06	40.24	17.04	20.04	7.60	9.59	0.40	0.41	13.49	7.79	3.05	3.56	2.07	1.45
36	E5_Aa	NovelBoundary	0	22.71	7.66	6.95	8.41	0.00	57.01	6.81	0.00	36.15	9.39	7.34	19.85	3.50	25.99	33.69	104.19	77.48	23.76	48.55	15.30	23.34	0.00	0.00	45.94	8.41	0.00	7.60	3.77	9.94
37	ER5a	ExonRegion	0	17.55	17.83	16.18	63.55	29.26	19.80	72.03	22.92	18.98	22.80	30.28	19.92	27.52	10.11	36.66	25.14	23.41	12.20	45.29	32.89	15.44	11.83	18.70	15.08	14.18	9.20	67.99	13.42	12.28
38	E5_Da	KnownBoundary	0	0.00	3.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.61	0.00	1.27	0.00	59.20	0.00	0.90	0.00	0.00	3.31	0.00	0.00	0.00	0.00	3.45	0.00	2.39	0.00	1.32
39	E5_Db	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	8.17	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.58
40	ER5b	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
41	ER5c	ExonRegion	0	0.00	0.00	0.00	0.00	0.00	0.04	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.12	0.00	0.00	0.15	0.08	0.00	0.00	0.00	0.00	0.05	0.00	0.00	0.00	0.00	0.00