Order	SeqName	SeqType	IsAE	ABC_RG012	ABC_RG016	ABC_RG015	ABC_RG046	ABC_RG047	ABC_RG048	ABC_RG049	ABC_RG058	ABC_RG059	ABC_RG061	ABC_RG073	ABC_RG074	ABC_RG086	GCB_RG003	GCB_RG005	GCB_RG006	GCB_RG007	GCB_RG010	GCB_RG014	GCB_RG045	GCB_RG050	GCB_RG055	GCB_RG062	GCB_RG063	GCB_RG064	GCB_RG071	GCB_RG072	GCB_RG069	GCB_RG085
1	RP11-288I21.1	Gene	0	7.29	4.58	5.55	7.37	1.54	6.41	1.91	1.31	5.19	7.42	3.67	3.61	2.82	7.80	15.40	9.99	11.45	17.67	4.04	2.71	2.48	2.00	2.86	5.78	5.54	5.34	0.58	5.67	2.59
2	453804	Transcript	0	3.12	2.44	2.19	4.25	0.41	2.24	0.76	0.50	2.01	2.80	1.27	1.19	1.08	2.87	6.78	4.44	3.68	7.71	1.59	1.27	0.86	0.68	1.17	2.42	2.24	2.05	0.15	2.48	0.90
3	ER1a	ExonRegion	0	0.18	0.00	0.25	0.00	0.00	0.42	0.00	0.31	0.66	0.40	0.00	0.10	0.47	0.18	0.62	0.14	0.00	0.23	0.50	0.23	0.28	0.05	0.00	0.66	0.40	0.00	0.00	0.54	0.00
4	E1a_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
5	I1	Intron	0	1.47	0.23	0.78	0.00	0.00	0.99	0.15	0.53	0.46	0.68	0.00	0.78	0.28	1.78	3.61	5.15	3.12	4.39	1.15	1.22	0.87	0.26	0.52	1.47	0.82	2.26	0.00	0.82	0.34
6	I1_AR1	ActiveIntronRegion	0	1.60	0.44	0.12	0.00	0.00	2.31	0.00	0.00	0.00	0.00	0.00	2.43	0.72	3.24	1.31	7.62	3.14	8.43	1.81	3.37	1.36	0.00	0.00	1.22	0.81	0.89	0.00	0.92	0.00
7	I1_SR1	SilentIntronRegion	0	2.29	0.27	1.45	0.00	0.00	1.67	0.22	1.62	0.68	0.48	0.00	0.41	0.14	2.11	8.04	6.17	3.83	4.73	2.11	1.13	0.99	0.79	0.40	0.95	0.31	4.50	0.00	1.26	0.66
8	I1_SR2	SilentIntronRegion	0	0.00	0.00	1.12	0.00	0.00	0.00	0.00	0.00	1.12	0.21	0.00	0.00	0.93	2.72	0.00	5.06	3.01	2.73	0.00	2.81	2.85	0.00	1.03	2.15	0.00	0.00	0.00	0.00	0.58
9	I1_AR3	ActiveIntronRegion	0	1.62	0.00	1.05	0.00	0.00	0.78	0.00	0.00	1.20	2.18	0.00	0.70	0.00	2.78	2.61	8.31	4.48	4.82	0.60	2.64	0.97	0.00	1.00	3.87	1.62	1.48	0.00	1.23	0.62
10	Ix	Intron	0	24.98	4.03	7.27	7.53	2.33	11.23	4.52	6.51	7.60	4.69	2.39	6.68	1.05	14.56	22.52	19.47	31.22	27.34	5.34	8.70	4.36	2.84	1.12	17.46	6.07	6.68	0.26	9.81	2.72
11	Ix_AR1	ActiveIntronRegion	0	32.41	3.46	6.04	8.88	3.85	7.57	6.14	3.81	8.16	3.45	1.77	6.60	1.16	12.60	15.62	20.83	27.55	21.37	3.59	6.71	2.79	3.12	1.27	12.05	4.81	7.30	0.00	9.78	3.02
12	Ix_SR1	SilentIntronRegion	0	21.91	4.28	7.82	6.99	1.69	12.83	3.86	7.68	7.40	5.24	2.66	6.75	1.01	15.46	25.54	18.97	32.91	29.99	6.11	9.57	5.04	2.73	1.07	19.83	6.64	6.44	0.38	9.86	2.60
13	Ix	Intron	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.70	0.00	0.00	19.65	6.52	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
14	Ix_SR1	SilentIntronRegion	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.90	0.00	0.00	20.36	6.79	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
15	E2_Aa	NovelBoundary	0	53.56	13.67	13.73	36.88	6.63	16.00	15.56	9.75	38.04	10.63	4.27	17.86	2.83	33.46	58.40	44.52	44.16	57.02	32.37	6.95	13.88	8.65	9.21	21.71	28.07	10.69	8.85	19.86	9.81
16	ER2a	ExonRegion	0	8.71	5.71	5.38	6.27	0.00	3.12	1.76	1.55	6.73	3.30	1.08	1.96	3.87	5.51	15.43	5.76	6.53	9.06	6.41	2.36	2.44	2.09	2.67	5.51	3.67	0.46	0.00	7.05	0.58
17	E2_Da	NovelBoundary	0	164.98	224.44	440.55	153.14	98.15	258.37	114.49	166.37	345.67	286.77	206.45	471.86	336.53	571.46	291.21	254.21	547.72	714.59	97.11	148.78	101.12	354.95	386.12	353.09	359.91	468.88	214.64	518.60	249.52
18	E2a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
19	Ix	Intron	0	8.48	4.68	4.09	0.00	2.76	5.43	1.14	2.43	4.03	3.80	1.34	4.18	1.59	12.01	9.18	8.50	17.15	12.08	3.61	4.00	0.27	2.72	1.70	2.43	4.30	7.39	1.03	3.07	1.76
20	Ix_SR2	SilentIntronRegion	0	9.65	5.17	4.28	0.00	3.25	5.65	0.89	2.72	4.22	4.27	1.40	4.26	1.87	12.57	9.67	9.15	18.59	11.50	3.23	3.04	0.32	3.06	1.58	2.74	4.72	7.73	1.05	3.58	1.44
21	Ix_AR1	ActiveIntronRegion	0	4.29	6.06	4.49	0.00	0.00	5.50	4.03	1.84	4.49	1.44	1.19	5.52	0.00	13.82	11.20	11.29	15.80	22.04	11.49	11.24	0.00	2.50	3.62	2.15	4.29	12.33	1.83	0.63	4.03
22	Ix_SR1	SilentIntronRegion	0	0.82	0.00	2.50	0.00	0.00	3.91	2.02	0.28	2.42	1.17	1.05	3.09	0.00	7.12	4.52	1.95	6.43	13.12	3.31	9.19	0.00	0.00	1.95	0.00	0.93	2.54	0.56	0.00	3.56
23	Ix	Intron	0	20.62	3.76	6.22	1.16	0.39	9.33	1.47	1.93	4.99	2.80	0.87	5.33	1.36	11.37	9.44	16.06	17.98	11.50	2.58	6.94	1.50	1.60	1.46	8.17	3.58	3.18	0.89	4.61	2.65
24	Ix_SR1	SilentIntronRegion	0	20.68	3.77	6.24	1.16	0.40	9.36	1.47	1.94	5.00	2.81	0.87	5.35	1.37	11.41	9.47	16.11	18.03	11.53	2.59	6.96	1.50	1.61	1.47	8.20	3.59	3.19	0.89	4.63	2.65
25	Ix	Intron	0	4.66	0.00	0.73	0.00	0.00	1.79	0.44	1.60	0.37	0.47	0.26	0.67	0.00	3.40	3.49	0.73	2.43	2.51	0.35	0.82	0.78	0.00	0.59	0.94	0.93	0.85	0.00	0.71	0.43
26	Ix_SR1	SilentIntronRegion	0	4.70	0.00	0.73	0.00	0.00	1.81	0.44	1.60	0.37	0.48	0.26	0.68	0.00	3.43	3.50	0.74	2.45	2.54	0.35	0.82	0.78	0.00	0.59	0.94	0.94	0.86	0.00	0.72	0.44
27	Ix	Intron	0	7.37	0.00	0.00	0.00	0.00	2.63	1.16	1.05	1.72	0.83	0.45	0.71	0.00	1.47	0.88	3.18	0.57	7.97	1.22	0.38	1.09	1.03	0.35	2.05	0.82	0.60	0.00	3.74	0.77
28	Ix_SR1	SilentIntronRegion	0	7.45	0.00	0.00	0.00	0.00	2.66	1.17	1.07	1.74	0.84	0.46	0.72	0.00	1.49	0.89	3.21	0.58	8.06	1.23	0.38	1.10	1.02	0.35	2.08	0.83	0.61	0.00	3.78	0.78
29	Ix	Intron	0	7.40	1.08	3.66	0.00	0.41	2.43	0.17	1.39	1.70	2.67	0.80	0.94	0.00	4.76	1.31	5.94	8.04	13.02	3.76	2.02	0.96	0.15	0.76	3.98	0.60	1.32	0.00	3.70	1.01
30	Ix_SR1	SilentIntronRegion	0	7.42	1.09	3.67	0.00	0.41	2.44	0.17	1.40	1.70	2.68	0.80	0.94	0.00	4.77	1.32	5.96	8.07	13.07	3.78	2.03	0.96	0.15	0.76	4.00	0.60	1.33	0.00	3.71	1.02
31	Ix	Intron	0	18.42	3.57	5.10	3.97	1.35	9.34	0.28	2.04	3.57	3.41	2.14	5.03	0.72	9.28	6.88	6.00	15.52	16.64	7.08	2.63	3.76	3.00	1.25	6.26	3.57	5.45	0.00	5.20	0.65
32	Ix_SR1	SilentIntronRegion	0	18.52	3.59	5.13	4.00	1.36	9.38	0.28	2.05	3.59	3.42	2.16	5.06	0.72	9.33	6.92	6.03	15.60	16.73	7.12	2.64	3.78	3.01	1.26	6.29	3.59	5.47	0.00	5.22	0.65
33	Ix	Intron	0	28.47	3.11	11.25	1.18	0.00	13.07	2.98	5.13	5.42	10.42	3.51	4.75	0.85	19.75	7.85	14.60	19.09	30.75	11.00	9.36	4.68	3.85	1.78	17.99	7.98	10.06	0.60	9.09	2.30
34	Ix_SR1	SilentIntronRegion	0	28.80	3.15	11.39	1.19	0.00	13.24	3.01	5.20	5.49	10.55	3.56	4.81	0.86	20.01	7.95	14.79	19.34	31.13	11.15	9.48	4.74	3.90	1.80	18.23	8.08	10.19	0.61	9.19	2.33
35	Ix	Intron	0	10.19	5.18	0.72	0.00	0.00	1.78	0.00	0.00	0.00	1.25	0.00	0.80	0.00	1.57	4.37	5.83	4.52	9.16	2.76	2.05	1.23	0.78	0.00	0.93	0.00	0.00	0.00	1.41	0.00
36	Ix_SR1	SilentIntronRegion	0	10.37	5.27	0.74	0.00	0.00	1.81	0.00	0.00	0.00	1.27	0.00	0.81	0.00	1.59	4.44	5.93	4.59	9.32	2.81	2.08	1.24	0.79	0.00	0.95	0.00	0.00	0.00	1.43	0.00
37	Ix	Intron	0	15.55	5.15	5.55	2.97	3.04	5.41	3.34	8.40	5.24	4.79	0.99	4.73	0.81	9.66	10.47	10.50	18.26	25.43	2.65	3.68	1.48	2.62	0.75	3.12	5.04	3.91	0.76	8.45	3.74
38	Ix_SR1	SilentIntronRegion	0	15.81	5.24	5.64	3.02	3.09	5.50	3.40	8.54	5.33	4.87	1.00	4.80	0.82	9.82	10.65	10.68	18.56	25.85	2.69	3.74	1.50	2.66	0.76	3.17	5.12	3.97	0.77	8.59	3.80
39	Ix	Intron	0	16.17	2.44	6.88	3.36	0.53	7.10	2.84	3.32	5.46	5.73	3.01	4.12	1.19	11.31	15.89	10.44	12.45	22.99	2.54	4.29	3.24	3.64	2.28	8.93	8.05	4.94	1.39	7.41	3.04
40	Ix_SR1	SilentIntronRegion	0	14.04	3.04	6.95	3.61	0.31	7.36	3.30	4.06	5.54	5.73	3.60	4.58	0.77	11.83	17.01	12.41	12.50	25.76	3.42	4.41	3.41	3.75	2.50	9.62	8.55	6.73	1.38	8.62	3.62
41	Ix_AR1	ActiveIntronRegion	0	19.10	1.64	6.81	3.04	0.83	6.77	2.22	2.34	5.38	5.76	2.22	3.51	1.76	10.64	14.44	7.82	12.41	19.34	1.36	4.14	3.03	3.52	1.99	8.03	7.40	2.53	1.40	5.81	2.27
42	E3_Aa	NovelBoundary	0	19.11	3.88	5.66	0.00	0.00	8.86	0.00	2.54	13.73	1.60	0.00	9.13	4.52	11.57	42.65	13.62	13.21	60.23	0.00	10.59	5.90	9.38	4.58	22.61	10.57	15.32	0.00	14.33	0.00
43	ER3a	ExonRegion	0	5.14	7.57	2.88	17.21	0.00	2.52	1.21	0.00	0.67	5.15	2.07	0.74	0.00	3.70	14.23	12.68	1.76	21.90	0.00	3.31	0.00	0.00	2.11	3.87	4.29	5.66	0.00	3.84	1.61
44	E3_Da	NovelBoundary	0	13.63	0.00	5.23	8.41	0.00	10.44	5.03	0.00	3.32	11.86	0.00	2.89	1.59	9.35	54.41	3.29	15.91	9.25	0.00	0.00	3.41	1.99	3.74	2.87	3.33	2.19	0.00	0.00	0.00
45	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
46	Ix	Intron	0	11.34	3.65	5.69	0.00	0.00	3.12	3.05	1.39	4.44	3.27	5.84	1.63	1.71	6.49	14.60	11.92	7.90	18.92	0.00	2.83	3.23	2.04	1.37	5.69	4.32	4.16	0.00	1.23	0.51
47	Ix_AR1	ActiveIntronRegion	0	11.49	3.70	5.77	0.00	0.00	3.16	3.09	1.41	4.51	3.32	5.93	1.66	1.74	6.59	14.82	12.06	8.01	19.21	0.00	2.87	3.28	2.07	1.39	5.77	4.38	4.22	0.00	1.25	0.51
48	E4_Aa	NovelBoundary	0	15.81	0.00	0.00	0.00	13.71	3.57	0.00	2.54	1.55	9.87	1.61	4.73	1.62	9.62	23.32	28.53	12.29	41.61	0.00	0.00	1.52	2.19	6.50	11.90	8.56	11.42	0.00	4.31	0.00
49	ER4a	ExonRegion	0	7.84	3.76	6.84	6.29	2.85	9.63	2.36	1.61	5.98	10.76	5.74	5.49	3.22	10.73	17.20	12.48	17.45	22.76	4.20	3.00	3.34	2.63	3.44	6.92	7.31	8.26	1.07	5.96	4.10